BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	668580 =	197 (1.030)	15 (0.080)	9/152	NT	7.7%	coding (565/1011 nt)	adh	Alcohol dehydrogenase
*	?	USA300TCH1516_ALE	668601 =	172 (0.950)	15 (0.080)	9/152	NT	7.7%	coding (586/1011 nt)	adh	Alcohol dehydrogenase

Only 100 of 246 total aligned reads displayed.

GGTGTTTTTGGTATAGGTGGTTTAGGTAACCTAGCTTTACAATATGCTAAAAACGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATTATTAATTCTAAAGATGTTGATCCAGTTGCAGAAGTTATGAAATTA  >  USA300TCH1516_ALE/668511‑668690

 gtgtTTTTGGTATAGGTGGTTTAGGTAACCTAGCTTTACAATATGCTAAAAACGTTATGGGGGCTAAAAATGTTGCCTTCGACATCAatga                                                                                          >  1:934556/1‑91 (MQ=255)

  tgtTTTTGGTATAGGTGGTTTAGGTAACCTAGCTTTACAATATGCTAAAAACGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAatgat                                                                                         <  2:2047690/91‑1 (MQ=255)

    tttttGGTATAGGTGGTTTAGGTAACCTAGCTTTACAATATGCTAAAAACGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAAtgatga                                                                                       <  1:1364122/91‑1 (MQ=255)

    tcaacatctttagaattaataatagcatcagcacctaattctttcgcgaatgctaatttatcatcATTGTTGCCTTCGACATCAAtgatga                                                                                       >  1:2004682‑M1/66‑91 (MQ=255)

     ttttGGTATAGGTGGATTAGGTAACCTAGCTTTACAATATGCTAAAAACGTTATGGGGACTAAAATTGTTGCCTTCGACATCAATgatgat                                                                                      >  1:3312508/1‑91 (MQ=255)

       ttGGTATAGGTGGTTTAGGTAACCTAGCTTTACAATATGCTAAAAACGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATaa                                                                                    >  2:1484998/1‑91 (MQ=255)

       ttGGTATAGGTGGTTTAGGTAACCTAGCTTTACAATATGCTAAAAACGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATaa                                                                                    <  2:3025899/91‑1 (MQ=255)

          gTATAGGTGGTTTAGGTAACCTAGCTTTACAATATGCTAAAAACGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAAtt                                                                                 <  2:891251/91‑1 (MQ=255)

           tataGGTGGTTTAGGTAACCTAGCTTTACAATATGCTAAAAACGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTa                                                                                <  2:183864/91‑1 (MQ=255)

             taGGTGGTTTAGGTAACCTAGCTTTACAATATGCTAAAAACGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGc                                                                              >  2:592723/1‑91 (MQ=255)

              aGGTGGTTTAGGTAACCTAGCTTTACAATATGCTAAAAACGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCa                                                                             <  1:2609365/91‑1 (MQ=255)

              aGGTGGTTTAGGTAACCTAGCTTTACAATATGCTAAAAACGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCa                                                                             <  2:2355861/91‑1 (MQ=255)

              aGGTGGTTTAGGTAACCTAGCTTTACAATATGCTAAAAACGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCa                                                                             <  1:3495070/91‑1 (MQ=255)

                gtggtTTAGGTAACCTAGCTTTACAATATGCTAAAAACGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCAtt                                                                           >  2:2147093/1‑91 (MQ=255)

                gtggtTTAGGTAACCTAGCTTTACAATATGCTAAAAACGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCAtt                                                                           >  2:2680751/1‑91 (MQ=255)

                  ggtTTAGGTAACCTAGCTTTACAATATGCTAAAAACGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTcg                                                                         <  2:3269118/91‑1 (MQ=255)

                   gtTTAGGTAACCTAGCTTTACAATATGCTAAAAACGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTcgc                                                                        >  2:2934306/1‑91 (MQ=255)

                   gtTTAGGTAACCTAGCTTTACAATATGCTAAAAACGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTcgc                                                                        >  1:626329/1‑91 (MQ=255)

                    tttAGGTAACCTAGCTTTACAATATGCTAAAAACGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTcgcg                                                                       <  2:618915/91‑1 (MQ=255)

                     ttAGGTAACCTAGCTTTACAATACGCTAATGACGTTATGGGGGCTAAAATTGTTGCCTTCGCCACCCATGCTGGTAAATTAGCATTcgcgc                                                                      >  2:2519539/1‑90 (MQ=255)

                      ataatagcatcagcacctaattctttcgcgaatgctaatttatcatcattgatgtcgaaggcaacaatGATGATAAATTAGCATTCGCGaa                                                                     >  1:29926‑M2/69‑91 (MQ=255)

                      ataatagcatcagcacctaattctttcgcgaatgctaatttatcatcattgatgtcgaaggcaacaatGATGATAAATTAGCATTCGCGaa                                                                     >  1:29942‑M2/69‑91 (MQ=255)

                      ataatagcatcagcacctaattctttcgcgaatgctaatttatcatcattgatgtcgaaggcaacaatGATGATAAATTAGCATTCGCGaa                                                                     >  1:1623831‑M2/69‑91 (MQ=255)

                       aGGTAACCTAGCTTTACAATATGCTAAAAACGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGaaa                                                                    <  1:1433952/91‑1 (MQ=255)

                         gTAACCTAGCTTTACAATATGCTAAAAACGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGATAGa                                                                  >  1:3009093/1‑91 (MQ=255)

                         gTAACCTAGCTTTACAATATGCTAAAAACGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGa                                                                  >  1:2495489/1‑91 (MQ=255)

                          tAACCTAGCTTTACAATATGCTAAAAACGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGGGAAAGaa                                                                 >  2:3444701/1‑91 (MQ=255)

                          tAACCTAGCTTTACAATATGCTAAAAACGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGaa                                                                 <  2:3851158/91‑1 (MQ=255)

                          tAACCTAGCTTTACAATATGCTAAAAACGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGaa                                                                 <  2:2848668/91‑1 (MQ=255)

                          tAACCTAGCTTTACAATATGCTAAAAACGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGaa                                                                 <  2:1974288/91‑1 (MQ=255)

                           aaCCTAGCTTTACAATATGCTAAAAACGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAAt                                                                >  1:1608654/1‑91 (MQ=255)

                           aaCCTAGCTTTACAATATGCTAAAAACGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAAt                                                                <  1:3673308/91‑1 (MQ=255)

                            aCCTAGCTTTACAATATGCTAAAAACGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAAtt                                                               >  1:575280/1‑91 (MQ=255)

                             ccTAGCTTTACAATATGCTAAAAACGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTa                                                              <  1:1680550/91‑1 (MQ=255)

                              cTNGCTTTACAATATGCTAAAAACGTTANGGGGGCTAANATTGTTGNCTTCGACATCAATGATGATANATTAGCATTCGCGAAAGAATTAg                                                             <  2:347027/91‑1 (MQ=255)

                              cTAGCTTTACAATATGCTAAAAACGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAg                                                             <  1:2730/91‑1 (MQ=255)

                                aGCTTTACAATATGCTAAAAACGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGt                                                           >  2:65416/1‑91 (MQ=255)

                                 gCTTTACAATATGCTAAAAACGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTg                                                          <  2:734133/91‑1 (MQ=255)

                                  cTTTACAATATGCTAAAAACGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCATGCGCGAAAGAATTAGGTGc                                                         >  1:1019463/1‑91 (MQ=255)

                                    ttACAATATGCTAAAAACGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTg                                                       >  2:2853758/1‑91 (MQ=255)

                                    ttACAATATGCTAAAAACGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTg                                                       >  1:3293068/1‑91 (MQ=255)

                                      aCAATATGCTAAAAACGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGAt                                                     >  2:1425777/1‑91 (MQ=255)

                                      aCAATATGCTAAAAACGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGAt                                                     >  2:1269430/1‑91 (MQ=255)

                                      aCAATATGCTAAAAACGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGAt                                                     <  1:2010209/91‑1 (MQ=255)

                                        aaTATGCTAAAAACGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGc                                                   <  1:1879359/91‑1 (MQ=255)

                                         atatGCTAAAAACGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCt                                                  <  1:1804752/91‑1 (MQ=255)

                                          tatGCTAAAAACGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCta                                                 >  2:3081329/1‑91 (MQ=255)

                                             gCTAAAAACGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCtatta                                              <  1:1296733/91‑1 (MQ=255)

                                               tAAAAACGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTattatt                                            <  2:1377033/91‑1 (MQ=255)

                                                 gcgaatgctaatttatcatcattgatgtcgaaggcaacaatGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATTATTaa                                          >  1:2840279‑M2/42‑91 (MQ=255)

                                                 aaaaCGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATTATTaa                                          >  2:475113/1‑91 (MQ=255)

                                                  aaaCGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATTATTAAt                                         <  2:3637792/91‑1 (MQ=255)

                                                    aCGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTattatt                                            >  1:3152174/1‑86 (MQ=255)

                                                    aCGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTattatt                                            <  2:3152174/86‑1 (MQ=255)

                                                     cGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATTATTAATTCt                                      >  1:3102312/1‑91 (MQ=255)

                                                     cGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATTATTAATTCt                                      >  2:1652494/1‑91 (MQ=255)

                                                       ttATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATTATTAATTCTaa                                    >  1:961519/1‑91 (MQ=255)

                                                        tATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATTATTAATTCTaaa                                   >  2:508592/1‑91 (MQ=255)

                                                         aTGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATTATTAATTCTAAAg                                  >  2:1479235/1‑91 (MQ=255)

                                                         aTGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATTATTAATTCTAAAg                                  <  1:3081329/91‑1 (MQ=255)

                                                            ggggCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATTATTAATTCTAAAGATg                               >  1:2205413/1‑91 (MQ=255)

                                                            ggggCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATTATTAATTCTAAAGATg                               <  1:2471139/91‑1 (MQ=255)

                                                               gCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATTATTAATTCTAAAGATGTTg                            <  1:2178411/91‑1 (MQ=255)

                                                               atcatcattgatgtcgaaggcaacaatGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATTATTAATTCTAAAGATGTTg                            >  1:3217981‑M2/28‑91 (MQ=255)

                                                                cTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATTATTAATTCTAAAGATGTTGa                           >  1:1140133/1‑91 (MQ=255)

                                                                 tAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATTATTAATTCTAAAGATGTTGAt                          <  2:3642035/91‑1 (MQ=255)

                                                                 tAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATTATTAATTCTAAAGATGTTGAt                          >  1:3248378/1‑91 (MQ=255)

                                                                 catcattgatgtcgaaggcaacaatGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATTATTAATTCTAAAGATGTTGAt                          >  2:265285‑M2/26‑91 (MQ=255)

                                                                  atcattgatgtcgaaggcaacaatGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATTATTAATTCTAAAGATGTTGATc                         >  1:885267‑M2/25‑91 (MQ=255)

                                                                  aaaaTTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATTATTAATTCTAAAGATGTTGATc                         >  1:2299608/1‑91 (MQ=255)

                                                                  aaaaTTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATTATTAATTCTAAAGATGTTGATc                         <  2:1962814/91‑1 (MQ=255)

                                                                  aaaaTTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATTATTAATTCTAAAGATGTTGATc                         <  1:2145644/91‑1 (MQ=255)

                                                                     attgatgtcgaaggcaacaatGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATTATTAATTCTAAAGATGTTGATCCAg                      >  1:3031147‑M2/22‑91 (MQ=255)

                                                                     ATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATTATTAATTCTAAAGATGTTGATCCAg                      >  1:1258517‑M1/1‑91 (MQ=255)

                                                                     ATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATTATTAATTCTAAAGATGTTGATCCAg                      <  1:3218733‑M1/91‑1 (MQ=255)

                                                                     ATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATTATTAATTCTAAAGATGTTGATCCAg                      <  2:2023434‑M1/91‑1 (MQ=255)

                                                                     ATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATCATTAATTCTAAAGATGTTGATCCAg                      <  1:2303801‑M1/91‑1 (MQ=255)

                                                                        GTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATTATTAATTCTAAAGATGTTGATCCAGTTg                   >  2:1918449‑M1/1‑91 (MQ=255)

                                                                        GTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATTATTAATTCTAAAGATGTTGATCCAGTTg                   >  1:3803530‑M1/1‑91 (MQ=255)

                                                                        GTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATTATTAATTCTAAAGATGTTGATCCAGTTg                   <  2:2252538‑M1/91‑1 (MQ=255)

                                                                        GTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATTATTAATTCTAAAGATGTTGATCCAGTTg                   >  1:3802357‑M1/1‑91 (MQ=255)

                                                                         ttgCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATTATTAATTCTAAAGATGTTGATCCAGTTGc                  <  2:600082/91‑1 (MQ=255)

                                                                         ttgCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATTATTAATTCTAAAGATGTTGATCCAGTTGc                  <  2:2495203/91‑1 (MQ=255)

                                                                          tgCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATTATTAATTCTAAAGATGTTGATCCAGTTGCa                 >  1:2835212/1‑91 (MQ=255)

                                                                           gCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTGGGTGCTGATGCTATTATTAATTCTAAAGATGTTGATCCAGTTGCAg                <  1:3080052/91‑1 (MQ=255)

                                                                           gCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATTATTAATTCTAAAGATGTTGATCCAGTTGCAg                >  2:1000553/1‑91 (MQ=255)

                                                                           gCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATTATTAATTCTAAAGATGTTGATCCAGTTGCAg                >  2:1336387/1‑91 (MQ=255)

                                                                                 gACATCAATGATGATAAATTAGCATTCGCGAAAGCATTAGGTGCTGATGCTATTATTAATTCTAAAGATGTTGATCCAGTTGCAGAAGTTa          >  2:3751056/1‑91 (MQ=255)

                                                                                 gACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATTATTAATTCTAAAGATGTTGATCCAGTTGCAGAAGTTa          <  1:370558/91‑1 (MQ=255)

                                                                                  aCATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATTATTAATTCTAAAGATGTTGATCCAGTTGCAGAAGTTAt         >  2:3872155/1‑91 (MQ=255)

                                                                                  aCATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATTATTAATTCTAAAGATGTTGATCCAGTTGCAGAAGTTAt         <  1:2540681/91‑1 (MQ=255)

                                                                                  aCATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATTATTAATTCTAAAGATGTTGATCCAGTTGCAGAAGTTAt         <  2:3495281/91‑1 (MQ=255)

                                                                                   cATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATTATTAATTCTAAAGATGTTGATCCAGTTGCAGAAGTTATg        <  1:3433016/91‑1 (MQ=255)

                                                                                    aTCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATTATTAATTCTAAAGATGTTGATCCAGTTGCAGAAGTTATGa       <  2:2441955/91‑1 (MQ=255)

                                                                                      caatGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATTATTAATTCTAAAGATGTTGATCCAGTTGCAGAAGTTATGaaa     <  2:1221069‑M2/87‑1 (MQ=255)

                                                                                      caatGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATTATTAATTCTAAAGATGTTGATCCAGTTGCAGAAGTTATGaaa     >  1:2085806‑M2/5‑91 (MQ=255)

                                                                                        atGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATTATTAATTCTAAAGATGTTGATCCAGTTGCAGAAGTTATGAAAtt   <  2:3470963‑M2/89‑1 (MQ=255)

                                                                                        atGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATTATTAATTCTAAAGATGTTGATCCAGTTGCAGAAGTTATGAAAtt   <  2:2551366‑M2/89‑1 (MQ=255)

                                                                                        atGATGATAAAGTAGCATGCGCGAAAGAATTAGGTGCTGATGCTATTATTAATTCTAAAGATGTTGATCCAGTTGCAGAAGTTATGAAAtt   <  1:1192371‑M2/89‑1 (MQ=255)

                                                                                         tGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATTATTAATTCTAAAGATGTTGATCCAGTTGCGGAAGTTATGAAATTa  <  2:212567‑M2/90‑1 (MQ=255)

GGTGTTTTTGGTATAGGTGGTTTAGGTAACCTAGCTTTACAATATGCTAAAAACGTTATGGGGGCTAAAATTGTTGCCTTCGACATCAATGATGATAAATTAGCATTCGCGAAAGAATTAGGTGCTGATGCTATTATTAATTCTAAAGATGTTGATCCAGTTGCAGAAGTTATGAAATTA  >  USA300TCH1516_ALE/668511‑668690

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.