BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	671388 =	211 (1.110)	11 (0.070)	8/140	NT	6.1%	intergenic (+13/‑375)	argS/nth_1	Arginine‑‑tRNA ligase/Endonuclease III
*	?	USA300TCH1516_ALE	671434 =	152 (0.910)	11 (0.070)	8/140	NT	6.1%	intergenic (+59/‑329)	argS/nth_1	Arginine‑‑tRNA ligase/Endonuclease III

Only 100 of 228 total aligned reads displayed.

TGGTCGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGCACAACTGCATAAGAG  >  USA300TCH1516_ALE/671344‑671524

tGGTCGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGtt                                                                                            <  2:2240713/91‑1 (MQ=255)

 ggTCGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGttt                                                                                           <  1:612935/91‑1 (MQ=255)

 ggTCGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGttt                                                                                           >  1:3837895/1‑91 (MQ=255)

     ggTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGttttttt                                                                                       >  2:1812507/1‑91 (MQ=255)

      gtgtAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTa                                                                                      <  2:1045821/91‑1 (MQ=255)

       tgtAAGCGCACCTGAATCAATGTAAGAACATTTATATCCACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAg                                                                                     >  1:740833/1‑91 (MQ=255)

       tgtAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAg                                                                                     <  1:2603069/91‑1 (MQ=255)

          aaGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTa                                                                                  >  2:2879754/1‑91 (MQ=255)

           aGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTAt                                                                                 <  2:3695809/91‑1 (MQ=255)

           aGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTAt                                                                                 >  2:3192352/1‑91 (MQ=255)

            gcgcACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTAtg                                                                                >  2:3795233/1‑91 (MQ=255)

            gcgcACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTAtg                                                                                <  1:2703891/91‑1 (MQ=255)

             cgcACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTAtgt                                                                               <  2:88298/91‑1 (MQ=255)

             cgcACCTGAAGCAATGTAAGAACATTTATATACGCTCCAACGTAGAGTTTCTCGAAAGATACTTGGTGTTGGAGTGTTTTTTTAGGTAtgt                                                                               <  2:2215784/91‑1 (MQ=255)

                aCCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGAc                                                                            >  1:2863494/1‑91 (MQ=255)

                 ccTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACa                                                                           >  2:3056833/1‑91 (MQ=255)

                 ccTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACa                                                                           <  2:2948226/91‑1 (MQ=255)

                  cTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACat                                                                          >  2:2686942/1‑91 (MQ=255)

                    gAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACatat                                                                        >  1:625515/1‑91 (MQ=255)

                    gAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACatat                                                                        <  2:1254340/91‑1 (MQ=255)

                    gAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACatat                                                                        <  2:2137948/91‑1 (MQ=255)

                    gAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTGTTAGGTATGTGACatat                                                                        >  1:3327439/1‑91 (MQ=255)

                     aaTCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATAtt                                                                       >  1:3612186/1‑91 (MQ=255)

                     aaTCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATAtt                                                                       >  1:1259240/1‑91 (MQ=255)

                       tCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTgg                                                                     <  2:406776/91‑1 (MQ=255)

                          aTGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGa                                                                  <  1:2767394/91‑1 (MQ=255)

                           tGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGaa                                                                 >  1:1883279/1‑91 (MQ=255)

                           tGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGaa                                                                 >  2:1264455/1‑91 (MQ=255)

                             tAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATg                                                               >  1:622089/1‑91 (MQ=255)

                             tAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATg                                                               >  2:563082/1‑91 (MQ=255)

                             tAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATg                                                               >  2:562822/1‑91 (MQ=255)

                             tAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATg                                                               >  2:1512431/1‑91 (MQ=255)

                              aaGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGc                                                              >  2:397332/1‑91 (MQ=255)

                              aaGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGc                                                              <  2:2750236/91‑1 (MQ=255)

                              aaGAACATTTATATACACTCCAACATAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGc                                                              >  2:3145295/1‑91 (MQ=255)

                               aGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCt                                                             <  1:3292679/91‑1 (MQ=255)

                               aGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCt                                                             <  1:3732314/91‑1 (MQ=255)

                                  gcATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAg                                                          <  2:3847949/90‑1 (MQ=255)

                                   cATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGc                                                              >  1:2885211/1‑86 (MQ=255)

                                   cATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGt                                                         <  2:2832508/91‑1 (MQ=255)

                                   cATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGt                                                         >  1:1838682/1‑91 (MQ=255)

                                   cATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGt                                                         >  2:825933/1‑91 (MQ=255)

                                    aTTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTa                                                        >  1:2124548/1‑91 (MQ=255)

                                    aTTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTa                                                        >  2:1089572/1‑91 (MQ=255)

                                      ttATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTAtg                                                      <  2:1013027/91‑1 (MQ=255)

                                      ttATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTAtg                                                      <  2:3857821/91‑1 (MQ=255)

                                      aaaaaaacactccaacacaaagtatctttcgagaaactctacgttggagtgtTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTAtg                                                      >  1:2638439‑M2/53‑91 (MQ=255)

                                       tatataCACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTAtgt                                                     >  2:842761/1‑91 (MQ=255)

                                         tataCACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGa                                                   >  1:3023779/1‑91 (MQ=255)

                                         tataCACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGa                                                   <  1:3053375/91‑1 (MQ=255)

                                         tataCACTCCAACGCAGAGATTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTAtgtgt                                                   >  2:3667557/1‑90 (MQ=255)

                                          aaacactccaacacaaagtatctttcgagaaactctacgttggagtgtTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGaa                                                  >  1:194383‑M2/49‑91 (MQ=255)

                                           taCACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAAt                                                 <  2:3523699/91‑1 (MQ=255)

                                             cactccaacacaaagtatctttcgagaaactctacgttggagtgtTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATaa                                               >  2:91461‑M2/46‑91 (MQ=255)

                                             cactccaacacaaagtatctttcgagaaactctacgttggagtgtTTTTTTAGGTATGTGACATACTGGGGAATGCTTAGTATGTGAATaa                                               >  1:3601347‑M2/46‑91 (MQ=255)

                                             CACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATaa                                               <  1:2979594‑M1/91‑1 (MQ=255)

                                              ACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGTAATGCTTAGTATGTGAATAAg                                              >  2:1579687‑M1/1‑91 (MQ=255)

                                               CTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGCAATGCTTAGTATGTGAATAAgg                                             <  2:3123083‑M1/91‑1 (MQ=255)

                                                 ccaacacaaagtatctttcgagaaactctacgttggagtgtTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGtt                                           >  2:167115‑M2/42‑91 (MQ=255)

                                                 CCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGtt                                           <  2:2544528‑M1/91‑1 (MQ=255)

                                                    ACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAag                                        <  2:2492665‑M1/91‑1 (MQ=255)

                                                     CGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAaga                                       <  2:2414176‑M1/91‑1 (MQ=255)

                                                       tAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAgg                                     >  1:1465815/1‑91 (MQ=255)

                                                       tAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGAATGTGACAGATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAgg                                     <  1:3101940/91‑1 (MQ=255)

                                                         gagTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGaa                                   >  2:3401012/1‑91 (MQ=255)

                                                         gagTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGaa                                   <  1:1550643/91‑1 (MQ=255)

                                                         gagTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGaa                                   <  2:2267174/91‑1 (MQ=255)

                                                         gagTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGaa                                   >  2:2174076/1‑91 (MQ=255)

                                                         gagTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGaa                                   <  2:3454857/91‑1 (MQ=255)

                                                         gagTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGaa                                   <  2:202080/91‑1 (MQ=255)

                                                          agTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAac                                  <  1:1959708/91‑1 (MQ=255)

                                                           gTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAag                                        >  2:1056459/1‑84 (MQ=255)

                                                           gTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAag                                        <  1:1056357/84‑1 (MQ=255)

                                                              tctcGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAg                              >  1:2483092/1‑91 (MQ=255)

                                                                tcGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGtt                            <  2:1876730/91‑1 (MQ=255)

                                                                 cGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTg                           >  1:1753117/1‑91 (MQ=255)

                                                                     aGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATg                       <  1:956362/91‑1 (MQ=255)

                                                                      gATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGc                      <  1:1083642/91‑1 (MQ=255)

                                                                       aTACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGct                     <  2:769688/91‑1 (MQ=255)

                                                                        tgcTTTGTGTTGGAGTGTTTTTTTAGGTATGTGGCATAGTGGGGAATGCTTAGTAGGTGAATAAGGTTAAGAGGAACACAGTTGGATGctc                    <  1:241198/89‑1 (MQ=255)

                                                                          cTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTg                  <  2:1316852/91‑1 (MQ=255)

                                                                           tttGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGc                 >  2:1342915/1‑91 (MQ=255)

                                                                            ttGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGca                <  1:617338/91‑1 (MQ=255)

                                                                            ttGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGca                <  1:1512431/91‑1 (MQ=255)

                                                                              gtgtTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGcaca              >  2:1230972/1‑91 (MQ=255)

                                                                              gtgtTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGcaca              <  1:2315091/91‑1 (MQ=255)

                                                                                gttggagtgtTTTTTTAGGTATGTGACATATGGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGCACAAc            <  2:2611615‑M2/81‑1 (MQ=255)

                                                                                 ttggagtgtTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGCACAACt           <  1:1302275‑M2/82‑1 (MQ=255)

                                                                                  tggagtgtTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGCACAACTg          <  2:621912‑M2/83‑1 (MQ=255)

                                                                                   ggagtgtTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGCACAACTGc         <  1:1830634‑M2/84‑1 (MQ=255)

                                                                                    gagtgtTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGCACAACTGCa        <  1:1171204‑M2/85‑1 (MQ=255)

                                                                                     agtgtTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGCACAACTGCAt       <  1:2946183‑M2/86‑1 (MQ=255)

                                                                                      gtgtTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGCACAACTGCATa      <  1:111673‑M2/87‑1 (MQ=255)

                                                                                        gtTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGCACAACTGCATAag    <  2:486831‑M2/89‑1 (MQ=255)

                                                                                        gtTCTTTTAGGTATGTGACATATTGGGGACTGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGCACAACTGCATAag    <  1:3123083‑M2/89‑1 (MQ=255)

                                                                                         tTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGCACAACTGCATAaga   >  1:1870907‑M2/2‑91 (MQ=255)

                                                                                         tTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGCACAACTGCATAaga   >  2:624663‑M2/2‑91 (MQ=255)

                                                                                         tTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGCACAACTGCATAaga   >  1:3438681‑M2/2‑91 (MQ=255)

                                                                                         tTTTTTTAGGTATGTGACATATTGGGGAACGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGCTGGATGCTCTGCACAACTGCATAaga   >  2:14587‑M2/2‑91 (MQ=255)

                                                                                          ttttttAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGCACAACTGCATAagag  <  1:1402421/91‑1 (MQ=255)

TGGTCGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGCACAACTGCATAAGAG  >  USA300TCH1516_ALE/671344‑671524

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.