| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 705329 | 171 (0.900) | 19 (0.110) | 10/142 | NT | 10.3% | intergenic (+1079/+81) | nhaK_1/mntA | Sodium, potassium, lithium and rubidium/H(+) antiporter/Manganese‑binding lipoprotein MntA |
| ? | USA300TCH1516_ALE | = 705368 | 180 (1.070) | intergenic (+1118/+42) | nhaK_1/mntA | Sodium, potassium, lithium and rubidium/H(+) antiporter/Manganese‑binding lipoprotein MntA | |||||
Only 100 of 241 total aligned reads displayed.
ATATTTAACGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTT > USA300TCH1516_ALE/705278‑705457 | atatTTAACGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTg < 1:3230244/91‑1 (MQ=255) tatTTAACGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGc < 2:1833730‑M2/91‑2 (MQ=255) tttAACGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGcat > 1:3456223‑M2/1‑88 (MQ=255) tttAACGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGcat > 1:2919505‑M2/1‑88 (MQ=255) tAACGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGcatca > 2:611034‑M2/1‑86 (MQ=255) aaCGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGcatcaa > 2:83702‑M2/1‑85 (MQ=255) cGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGcatcaaca > 1:3414807‑M2/1‑83 (MQ=255) cACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGcatcaacatc < 2:1552602/91‑1 (MQ=255) cACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGcatcaacatc < 1:844657/91‑1 (MQ=255) cACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGAGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGcatcaacatc < 1:3088412/91‑1 (MQ=255) aCGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGcatcaacatca < 1:2680058/91‑1 (MQ=255) cGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGcatcaacatcaa > 2:865615/1‑91 (MQ=255) gATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAAt > 1:975218/1‑91 (MQ=255) tGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCAt > 1:1260095/1‑91 (MQ=255) gggACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCACTTCATc > 2:2319746/1‑91 (MQ=255) aCTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTa > 2:1353609/1‑91 (MQ=255) tATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACt < 1:2890294/91‑1 (MQ=255) ttAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGTTACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTc > 1:1588908/1‑91 (MQ=255) ttAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTc > 2:1414252/1‑91 (MQ=255) tAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCa > 2:2022154/1‑91 (MQ=255) ccTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTa > 1:1416308/1‑91 (MQ=255) cTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTaa > 1:1513294/1‑91 (MQ=255) gACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAaca > 1:2597583/1‑91 (MQ=255) tttGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAg > 2:2862690/1‑91 (MQ=255) tttGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAg < 1:1318072/91‑1 (MQ=255) ttGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGc > 1:1069011/1‑91 (MQ=255) ttGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGc < 2:1183668/91‑1 (MQ=255) gTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCgt < 1:2286891/91‑1 (MQ=255) ttATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCgtg < 1:591701/91‑1 (MQ=255) ttATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCgtg > 1:2238419/1‑91 (MQ=255) aTGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGtt < 2:3021933/91‑1 (MQ=255) aTGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGtt < 2:2285167/91‑1 (MQ=255) tGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGcatcaacataacaaagtcgaaggctaatagtcccatatcgtgcg < 1:3185795‑M2/91‑45 (MQ=255) tGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGcatcaacataacaaagtcgaaggctaatagtcccatatcgtgcg < 1:3382065‑M2/91‑45 (MQ=255) tGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTa > 2:1773634/1‑91 (MQ=255) gTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGcatcaacataacaaagtcgaaggctaatagtcccatatcgtgcgt < 1:3025693‑M2/91‑46 (MQ=255) gTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGcatcaacataacaaagtcgaaggctaatagtcccatatcgtgcgt < 1:57635‑M2/91‑46 (MQ=255) ttGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGcatcaacataacaaagtcgaaggctaatagtcccatatcgtgcgtt < 1:417932‑M2/91‑47 (MQ=255) gATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGcatcaacataacaaagtcgaaggctaatagtcccatatcgtgcgttaa < 1:2503134‑M2/91‑49 (MQ=255) gATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGcatcaacataacaaagtcgaaggctaatagtcccatatcgtgcgttaa < 2:2401902‑M2/91‑49 (MQ=255) gATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGcatcaacataacaaagtcgaagactaatagtcccatatcgtgcgttaa < 1:3619841‑M2/91‑49 (MQ=255) aTGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCa < 2:2735905/91‑1 (MQ=255) aTGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCa < 1:3459885/91‑1 (MQ=255) aTGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCa < 2:2298743/91‑1 (MQ=255) tgtgtgGCCTAAAATATTGGAGATACCAATATTTTAGGTTGcatcaacataacaaagtcgaaggctaatagtcccatatcgtgcgttaaat < 1:2191013‑M2/91‑51 (MQ=255) tgtgGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGc < 2:3884801/91‑1 (MQ=255) gtgGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCt > 1:3788927/1‑91 (MQ=255) tgGCCTAAAATATTGGAGATACCAATATTTTAGGTTGcatcaacataacaaagtcgaaggctaatagtcccatatcgtgcgttaaatatat < 1:66249‑M2/91‑55 (MQ=255) ggCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTc > 2:3205989/1‑91 (MQ=255) ggCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTc > 2:3742639/1‑91 (MQ=255) cTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAAGACAGCGTGTTATTTCATGCTTCCgt > 1:3622087/1‑91 (MQ=255) cTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCgt < 1:2426442/91‑1 (MQ=255) aaaaTATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCgtgt < 2:1293360/91‑1 (MQ=255) aaaTATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTa > 2:244693/1‑91 (MQ=255) aaaTATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTa > 2:245502/1‑91 (MQ=255) aaTATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTAc < 1:506944/91‑1 (MQ=255) tatTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAg > 2:3116830/1‑91 (MQ=255) tatTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAg < 1:1273218/91‑1 (MQ=255) atTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGt < 1:1970381/91‑1 (MQ=255) atTGGAGAGACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGt > 1:1786287/1‑91 (MQ=255) ttGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGtt < 2:2397636/91‑1 (MQ=255) ttGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGtt < 2:3315939/91‑1 (MQ=255) ttGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGtt < 2:1097664/91‑1 (MQ=255) ttGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGtt < 2:3789458/91‑1 (MQ=255) ttGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGtt < 2:3166186/91‑1 (MQ=255) ttGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGtt > 1:1863297/1‑91 (MQ=255) ggAGATACCAATATTTTAGGTTGcatcaacataacaaagtcgaaggctaatagtcccatatcgtgcgttaaatatatattaccctcctatt < 2:1709342‑M2/91‑69 (MQ=255) ggAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTc > 2:3537105/1‑91 (MQ=255) ggAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTc < 1:587501/91‑1 (MQ=255) ggAGATACAAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTc > 2:1080374/1‑91 (MQ=255) gagaTACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCa > 1:2143293/1‑91 (MQ=255) agaTACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCaa < 2:1024118/91‑1 (MQ=255) gaTACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATGAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAat < 2:2123886/91‑1 (MQ=255) aTACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAata < 1:2022154/91‑1 (MQ=255) aTACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTCCAata > 2:3139190/1‑91 (MQ=255) tACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAatat < 1:865697/91‑1 (MQ=255) tACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAatat > 1:2748840/1‑91 (MQ=255) aCCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATAtt < 2:261571/91‑1 (MQ=255) aaTATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGa > 2:1085455/1‑91 (MQ=255) aaTATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGa > 1:765418/1‑91 (MQ=255) atatTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGAt > 2:3468921/1‑91 (MQ=255) tatTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGAtt < 2:2168429/91‑1 (MQ=255) tatTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGAtt > 1:1736824/1‑91 (MQ=255) atTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGAttt < 2:528590/91‑1 (MQ=255) ttttAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGAtatc < 2:1604714/91‑4 (MQ=255) ttttAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTtc < 1:280634/91‑1 (MQ=255) ttttAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTtc < 1:3341453/91‑1 (MQ=255) tttCGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTtca < 1:3053334/91‑1 (MQ=255) ttAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTtcat > 1:3555579/1‑91 (MQ=255) ttAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTtcat < 2:327426/91‑1 (MQ=255) tAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTtcatc < 1:85178/91‑1 (MQ=255) aGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATCTTTGATTtcatca > 2:3512383/1‑91 (MQ=255) aGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTtcatca > 2:1202013/1‑91 (MQ=255) aGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTtcatca > 1:3790003/1‑91 (MQ=255) aGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTtcatca > 1:2381027/1‑91 (MQ=255) aGGTTGCATCAACATCAATTCATCCTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTtaatca > 2:1028651/1‑91 (MQ=255) ggTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTcatcat > 2:3262907/1‑91 (MQ=255) ggTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTcatcat > 1:2438367/1‑91 (MQ=255) ggTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTcatcat > 1:1136420/1‑91 (MQ=255) gTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAAAATTTGATTTCATCAtt > 2:3002143/1‑91 (MQ=255) | ATATTTAACGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTT > USA300TCH1516_ALE/705278‑705457 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |