| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 802141 | 128 (0.670) | 14 (0.090) | 8/138 | NT | 10.1% | intergenic (+382/+242) | USA300HOU_RS03915/USA300HOU_RS03920 | Putative 5'(3')‑deoxyribonucleotidase/Putative lipid kinase |
| ? | USA300TCH1516_ALE | = 802168 | 139 (0.850) | intergenic (+409/+215) | USA300HOU_RS03915/USA300HOU_RS03920 | Putative 5'(3')‑deoxyribonucleotidase/Putative lipid kinase | |||||
Only 100 of 250 total aligned reads displayed.
TCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAA > USA300TCH1516_ALE/802078‑802257 | tCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACg > 2:2833479/1‑91 (MQ=255) tATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGtcat < 1:3451142‑M2/91‑5 (MQ=255) tATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGtcat < 1:807541‑M2/91‑5 (MQ=255) tATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGtcat > 2:2353325‑M2/1‑87 (MQ=255) tATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGtcat > 2:2610279‑M2/1‑87 (MQ=255) aTCATTTCCGTCCCGCTCTCAATAAATGATAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGtcatc < 1:1341290‑M2/91‑6 (MQ=255) tattttaaatcatagtggtttatgcgtctttttcaaattctataaaAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCg > 1:3829655‑M1/47‑91 (MQ=255) cATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGtcatccg < 2:768266‑M2/91‑8 (MQ=255) ttttcCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGtcatccga > 2:3770065‑M2/2‑83 (MQ=255) aTTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGtcatccga > 1:3765713‑M2/1‑83 (MQ=255) aTTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGtcatccga > 2:1306682‑M2/1‑83 (MQ=255) aTTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGtcatccga < 1:2565862‑M2/91‑9 (MQ=255) aTTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGtcatccga > 2:2702840‑M2/1‑83 (MQ=255) ttttaaatcatagtggtttatgcgtctttttcaaattctataaaAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGAt > 2:2976946‑M1/45‑91 (MQ=255) ttCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGtcatccgatt > 1:123080‑M2/1‑81 (MQ=255) cGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGAttttt > 2:251540/1‑91 (MQ=255) aaatcatagtggtttatgcgtctttttcaaattctataaaAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGAttttt > 1:1749669‑M1/41‑91 (MQ=255) gTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGAtttttt < 1:2665324/91‑1 (MQ=255) aatcatagtggtttatgcgtctttttcaaattctataaaAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGAtttttt > 1:2339235‑M1/40‑91 (MQ=255) cccGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTtat > 1:1156048/1‑91 (MQ=255) cGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAg > 1:2788115/1‑91 (MQ=255) tctcAATAAATGTTAGTTTATCTTATTATTACAAATCGGATGAATGTGTTAATCTATGGCAGATTACTCGTCATCCGATCTTTTATAGAAt > 2:2965264/1‑91 (MQ=255) ctcAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAAtt > 2:1381304/1‑91 (MQ=255) tcAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAAttt > 2:171321/1‑91 (MQ=255) tcAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAAttt < 2:2017289/91‑1 (MQ=255) aTAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGaa < 2:512902/91‑1 (MQ=255) aTAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATGACACGTCATCCGATTTTTTATAGAATTTGaa < 2:2900467/91‑1 (MQ=255) tAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGaaa < 1:2437381/91‑1 (MQ=255) tAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGaaa > 1:2267092/1‑91 (MQ=255) aaTGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGaaaaa < 1:3535214/91‑1 (MQ=255) tGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGa < 1:212904/91‑1 (MQ=255) cgtctttttcaaattctataaaAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGa > 1:1874453‑M1/23‑91 (MQ=255) ttAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACg < 2:459663/91‑1 (MQ=255) tAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGc > 2:2809160/1‑91 (MQ=255) aGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCa > 2:3509515/1‑91 (MQ=255) aGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCa > 1:2535426/1‑91 (MQ=255) tttATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATa > 2:1203270/1‑91 (MQ=255) tttATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATa > 1:1094686/1‑91 (MQ=255) tttATCTTATTATTAT‑AATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATaa > 2:2115298/1‑91 (MQ=255) ttATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGtcatccgatttataataataagataaactaacatttat < 1:2947719‑M2/91‑39 (MQ=255) ttATCATATTATTATAAATCGGATGTATGTGTTAATCTAGGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATaa < 1:3608632/91‑1 (MQ=255) aTCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGtcatccgatttataataataagataaactaacatttattg < 2:3687283‑M2/91‑41 (MQ=255) aTCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAAc < 1:481447/91‑1 (MQ=255) tCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAAcc > 2:2324026/1‑91 (MQ=255) tCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAAcc < 1:707350/91‑1 (MQ=255) tattattatAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACt < 1:1625322/91‑1 (MQ=255) attattatAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTa > 1:596761/1‑91 (MQ=255) attattatAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTa < 1:888852/91‑1 (MQ=255) ttattatAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTAt > 2:3312559/1‑91 (MQ=255) tattatAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATg > 1:1539483/1‑91 (MQ=255) tataAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGAtt > 1:994113/1‑91 (MQ=255) ataAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTGATAGAATTTGAAAAAGACGCATAAACCACTATGAttt < 1:3283456/91‑1 (MQ=255) taAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTa > 1:2433493/1‑91 (MQ=255) AAATCGGATGACTGTGTTCATCTATGGCAGATTACACGCCATCCGATTTTTTATAGCATCTGAAAAAGACGCATAAACCACTATGATTTaa < 2:344209‑M1/91‑1 (MQ=255) AATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTaaa < 2:595497‑M1/91‑1 (MQ=255) AATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTaaa > 2:737051‑M1/1‑91 (MQ=255) AATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTaaa < 1:1807185‑M1/91‑1 (MQ=255) ATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACt < 2:1066210‑M1/80‑1 (MQ=255) ATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACt > 1:1066210‑M1/1‑80 (MQ=255) CGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATa > 1:3578341‑M1/1‑91 (MQ=255) GGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATac < 1:850258‑M1/91‑1 (MQ=255) GGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATac < 1:2476990‑M1/91‑1 (MQ=255) GGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATac > 1:2845948‑M1/1‑91 (MQ=255) GATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATaca > 2:2788115‑M1/1‑91 (MQ=255) ATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATacaa < 1:723655‑M1/91‑1 (MQ=255) tGAATGTGTTAATCTATGGCAGATTACACGtcatccgatttataataataagataaactaacatttattgagagcgggacggaaatgataa < 2:2428692‑M2/91‑62 (MQ=255) TGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATacaac > 1:1381304‑M1/1‑91 (MQ=255) TGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATacaac < 2:1440871‑M1/91‑1 (MQ=255) GAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATacaaca < 1:1969420‑M1/91‑1 (MQ=255) aaTGTGTTAATCTATGGCAGATTACACGtcatccgatttataataataagataaactaacatttattgagagcgggacggaaatgataaag < 2:2215543‑M2/91‑64 (MQ=255) aaTGTGTTAATCTATGGCAGATTACACGtcatccgatttataataataagataaactaacatttattgagagcgggacggaaatgataaag < 1:3658656‑M2/91‑64 (MQ=255) aaTGTGTTAATCTATGGCAGATTACACGtcatccgatttataataataagataaactaacatttattgagagcgggacggaaatgataaag < 2:286774‑M2/91‑64 (MQ=255) AATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATAcatcat < 1:3006325‑M1/91‑1 (MQ=255) AATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACAt > 2:3682629‑M1/1‑91 (MQ=255) tgtTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACatcaat > 2:2590849/1‑91 (MQ=255) gtTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACatcaatc > 2:544964/1‑91 (MQ=255) gtTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACatcaatc > 1:1410387/1‑91 (MQ=255) aaTCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCAtt > 1:3399215/1‑91 (MQ=255) aTCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCAttt < 2:161547/91‑1 (MQ=255) aTCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCAttt > 2:1013072/1‑91 (MQ=255) tATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAg < 1:2950507/91‑1 (MQ=255) tATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAg > 2:683471/1‑91 (MQ=255) tGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGaa < 1:2853913/40‑1 (MQ=255) tGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTg > 1:2152806/1‑91 (MQ=255) tGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTg > 2:3286503/1‑91 (MQ=255) tGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTg > 1:1467040/1‑91 (MQ=255) ggCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTgg > 2:2470818/1‑91 (MQ=255) ggCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTgg > 2:1100489/1‑91 (MQ=255) aGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCAt > 2:527788/1‑91 (MQ=255) gATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGc < 2:3877019/88‑1 (MQ=255) gATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATg < 2:2315581/91‑1 (MQ=255) aTTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATgc < 2:1115197/91‑1 (MQ=255) ttACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATgcg < 2:310173/91‑1 (MQ=255) tACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATgcgc < 2:1247861/91‑1 (MQ=255) acacGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGcc > 2:1893240/1‑91 (MQ=255) acacGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGcc > 1:526402/1‑91 (MQ=255) acGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCaa > 1:1108104/1‑91 (MQ=255) acGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCaa > 2:3240050/1‑91 (MQ=255) cGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCaaa > 1:2024377/1‑91 (MQ=255) cGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCaaa < 1:2423976/91‑1 (MQ=255) | TCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAA > USA300TCH1516_ALE/802078‑802257 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |