BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	893176 =	213 (1.120)	13 (0.080)	9/136	NT	7.2%	intergenic (+177/‑73)	trxA_1/metN2	Thioredoxin/Methionine import ATP‑binding protein MetN 2
*	?	USA300TCH1516_ALE	893212 =	153 (0.950)	13 (0.080)	9/136	NT	7.2%	intergenic (+213/‑37)	trxA_1/metN2	Thioredoxin/Methionine import ATP‑binding protein MetN 2

Only 100 of 275 total aligned reads displayed.

TGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCGGACTAAAAATAAAGAAGTC  >  USA300TCH1516_ALE/893122‑893302

 gCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCAtt                                                                                           <  1:2693821/91‑1 (MQ=255)

 gCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCAtt                                                                                           >  1:2410211/1‑91 (MQ=255)

 gCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAACAtt                                                                                           <  1:3068343/91‑1 (MQ=255)

  ccAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTCCTATTGCTTTCTCAATTTTTCTATCGATACTGAGAAAGCAttt                                                                                          >  1:3881653/1‑91 (MQ=255)

   cAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCACAATTTTTCTATCGATATTGAGAAAGCAtttt                                                                                         <  2:3804364/91‑1 (MQ=255)

    aaTTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCAttttt                                                                                        <  2:1850642/91‑1 (MQ=255)

      ttCACATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTtttta                                                                                      <  1:1701319/91‑1 (MQ=255)

       tCACATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTttttat                                                                                     <  2:1355335/91‑1 (MQ=255)

        cacaTAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTttttatt                                                                                    <  2:1280052/91‑1 (MQ=255)

        cacaTAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTttttatt                                                                                    >  2:3424776/1‑91 (MQ=255)

              aaGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTttatta                                                                              <  1:2554300/91‑1 (MQ=255)

                gTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAg                                                                            <  1:2722580/91‑1 (MQ=255)

                gTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAg                                                                            <  2:853049/91‑1 (MQ=255)

                 ttttAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGc                                                                           >  1:1461001/1‑91 (MQ=255)

                 ttttAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGc                                                                           <  1:888733/91‑1 (MQ=255)

                 ttttAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGc                                                                           <  1:2563791/91‑1 (MQ=255)

                  tttAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCa                                                                          <  1:1779637/91‑1 (MQ=255)

                  tttAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCa                                                                          >  1:3130087/1‑91 (MQ=255)

                    tAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAac                                                                        >  1:1404811/1‑91 (MQ=255)

                     aaCTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAaca                                                                       >  2:2596440/1‑91 (MQ=255)

                      aCTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAacac                                                                      >  1:1306550/1‑91 (MQ=255)

                       cTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAAcaca                                                                     >  1:980994/1‑91 (MQ=255)

                          ttGAAGATGAGAGAAACAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAggg                                                                  >  1:110399/1‑91 (MQ=255)

                          ttGAAGATGAGAGAAACAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAggg                                                                  >  1:3371572/1‑91 (MQ=255)

                           tGAAGATGAGAGAAACAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGgga                                                                 <  2:180789/91‑1 (MQ=255)

                            gAAGATGAGAGAAACAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGggag                                                                >  2:2074290/1‑91 (MQ=255)

                             aaGATGAGAGAAACAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGggagg                                                               >  2:686956/1‑91 (MQ=255)

                               gATGAGAGAAACAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGaa                                                             <  2:1982401/91‑1 (MQ=255)

                                aTGAGAGAAACAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAAt                                                            >  2:2022749/1‑91 (MQ=255)

                                 tGAGAGAAACAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTTTTTTTTTTATCAACACAGGGAGGAATc                                                           >  2:3035913/1‑91 (MQ=255)

                                 tGAGAGAAACAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATc                                                           >  1:2825058/1‑91 (MQ=255)

                                 tGAGAGAAACAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATc                                                           >  2:2907741/1‑91 (MQ=255)

                                 tGAGAGAAACAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATc                                                           >  2:3035751/1‑91 (MQ=255)

                                  gagagaAACAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCa                                                          <  2:2325227/91‑1 (MQ=255)

                                     agaAACAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACg                                                       >  1:3465037/1‑91 (MQ=255)

                                     agaAACAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACg                                                       >  1:2069649/1‑91 (MQ=255)

                                     agaAACAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACg                                                       >  2:3455576/1‑91 (MQ=255)

                                       aaaCAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTg                                                     <  1:1443331/91‑1 (MQ=255)

                                        aaCAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGa                                                    <  2:2272925/91‑1 (MQ=255)

                                         aCAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGAt                                                   <  1:804810/91‑1 (MQ=255)

                                           aaTACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTg                                                 <  2:2799921/91‑1 (MQ=255)

                                           aaTACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTCATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTg                                                 >  2:1721383/1‑91 (MQ=255)

                                            aTACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGa                                                >  2:1268108/1‑91 (MQ=255)

                                            aTACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGa                                                >  2:3689099/1‑91 (MQ=255)

                                            aTACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGa                                                >  2:1667929/1‑91 (MQ=255)

                                            aTACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGa                                                >  2:79655/1‑91 (MQ=255)

                                               taaaaaatgctttctcaatatcgatagaaaaattgagaaagcaTTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAAtt                                             >  2:106553‑M2/44‑91 (MQ=255)

                                                tactaTTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACTCAGGGAGGAATCAACGTGATTGAATTa                                            <  1:3424776/91‑1 (MQ=255)

                                                tactaTTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTa                                            >  1:3748887/1‑91 (MQ=255)

                                                  ctaTTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAAGGTGATTGAATTaaa                                          <  2:3295582/91‑1 (MQ=255)

                                                  ctaTTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTaaa                                          >  2:2748250/1‑91 (MQ=255)

                                                   taTTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTaaaa                                         <  1:161186/91‑1 (MQ=255)

                                                   taTTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTaaaa                                         >  2:566015/1‑91 (MQ=255)

                                                   taTTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTaaaa                                         >  2:1509330/1‑91 (MQ=255)

                                                     ttGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAaaga                                       <  2:2664770/91‑1 (MQ=255)

                                                     ttGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAaaga                                       >  1:2979546/1‑91 (MQ=255)

                                                       gctttctcaatatcgatagaaaaattgagaaagcaTTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAaagaag                                     >  2:1882681‑M2/36‑91 (MQ=255)

                                                         tttctcaatatcgatagaaaaattgagaaagcaTTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAgtt                                   >  1:1083442‑M2/34‑91 (MQ=255)

                                                          ttctcaatatcgatagaaaaattgagaaagcaTTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAgttg                                  >  2:50542‑M2/33‑91 (MQ=255)

                                                          ttctcaatatcgatagaaaaattgagaaagcaTTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAgttg                                  >  1:508652‑M2/33‑91 (MQ=255)

                                                           TCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAgttgt                                 <  2:2175738‑M1/91‑1 (MQ=255)

                                                            CTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAgttgtt                                <  1:2457489‑M1/91‑1 (MQ=255)

                                                              CAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTaa                              <  1:2667506‑M1/91‑1 (MQ=255)

                                                              CAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTaa                              >  1:2523004‑M1/1‑91 (MQ=255)

                                                              CAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTaa                              >  1:2135357‑M1/1‑91 (MQ=255)

                                                              CAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTaa                              >  1:686956‑M1/1‑91 (MQ=255)

                                                               AATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTaaa                             >  2:1484252‑M1/1‑91 (MQ=255)

                                                                 TTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTACGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGACGTTGTTAAAGa                           <  2:3187201‑M1/91‑1 (MQ=255)

                                                                    ttCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAata                        <  1:2429522/91‑1 (MQ=255)

                                                                     tCTATCGAATTTGAGAAAGAATTTTTTATTTTATTAAAAAACACAGGGGGGAATCAACGGGATTGAATTAAAAGAAGTTGTTAAAGAatat                       <  2:766596/91‑1 (MQ=255)

                                                                        aTCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCgg                    >  2:3004242/1‑91 (MQ=255)

                                                                        aTCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCgg                    >  1:2784711/1‑91 (MQ=255)

                                                                        aTCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCgg                    <  1:3188747/91‑1 (MQ=255)

                                                                        aTCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCgg                    <  2:1145936/91‑1 (MQ=255)

                                                                          cGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCGGAc                  >  1:3648438/1‑91 (MQ=255)

                                                                          cGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCGGAc                  <  2:2362650/91‑1 (MQ=255)

                                                                          cGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCGGAc                  <  2:1068250/91‑1 (MQ=255)

                                                                          cGATATTGAGAAAGCATTTTTTATTTAATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCGGAc                  >  1:1718875/1‑91 (MQ=255)

                                                                           gATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCGGACt                 <  2:2540246/91‑1 (MQ=255)

                                                                           gATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTAATTGAATTAAAAGAAGTTGTTAAAGAATATCGGACt                 >  2:3834362/1‑91 (MQ=255)

                                                                             tatTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCGGACTaa               >  1:2888084/1‑91 (MQ=255)

                                                                              attgagaaagcaTTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCGGACTaaa              <  2:527827‑M2/79‑1 (MQ=255)

                                                                               ttgagaaagcaTTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCGGACTaaaa             <  1:2907176‑M2/80‑1 (MQ=255)

                                                                                tgagaaagcaTTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCGGACTaaaaa            >  2:2557162‑M2/11‑91 (MQ=255)

                                                                                 gagaaagcaTTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAgttgtt                                >  1:1903506‑M2/10‑70 (MQ=255)

                                                                                 gagaaagcaTTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCGGACt                 <  2:1204043‑M2/76‑1 (MQ=255)

                                                                                  agaaagcaTTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCGGACTAAAAATa          <  1:2596440‑M2/83‑1 (MQ=255)

                                                                                  agaaagcaTTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCGGACTAAAAATa          >  1:588023‑M2/9‑91 (MQ=255)

                                                                                    aaagcaTTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAACGAAGTTGTTAAAGAATATCGGACTAAAAATaaa        >  1:1286490‑M2/7‑91 (MQ=255)

                                                                                     aagcaTTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCGGACTAAAAATAaag       <  2:3884201‑M2/86‑1 (MQ=255)

                                                                                     aagcaTTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCGGACTAAAAATAaag       <  1:3200395‑M2/86‑1 (MQ=255)

                                                                                     aagcaTTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCGGACTAAAAATAaag       <  1:235856‑M2/86‑1 (MQ=255)

                                                                                      agcaTTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCGGACTAAAAATAaaga      <  2:201727‑M2/87‑1 (MQ=255)

                                                                                       gcaTTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCGGACTAAAAATAaagaa     >  1:2295885‑M2/4‑91 (MQ=255)

                                                                                       gcaTTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCGGACTAAAAATAaagaa     <  2:3736162‑M2/88‑1 (MQ=255)

                                                                                        caTTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCGGACTAAAAATAaagaag    <  2:1051953‑M2/89‑1 (MQ=255)

                                                                                        caTTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCGGACTAAAAATAaagaag    <  2:2495711‑M2/89‑1 (MQ=255)

                                                                                        caTTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCGGACTAAAAATAaag       <  1:521086‑M2/86‑1 (MQ=255)

                                                                                        caTTTTTTATTTTATCAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCGGACTAAAAATAaagaag    >  2:3147805‑M2/3‑91 (MQ=255)

                                                                                         aTTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTCATTGAATTAAAAGAAGTTGTTAAAGCATATCGGACTAAAAATAAAGAAGt   >  2:3600848‑M2/2‑91 (MQ=255)

TGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAACAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCGGACTAAAAATAAAGAAGTC  >  USA300TCH1516_ALE/893122‑893302

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.