BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	909572 =	175 (0.920)	11 (0.060)	9/144	NT	6.6%	intergenic (‑495/‑539)	USA300HOU_RS04500/csbD_1	hypothetical protein/Stress response protein CsbD
*	?	USA300TCH1516_ALE	909605 =	155 (0.910)	11 (0.060)	9/144	NT	6.6%	intergenic (‑528/‑506)	USA300HOU_RS04500/csbD_1	hypothetical protein/Stress response protein CsbD

Only 100 of 222 total aligned reads displayed.

TACGCCACTCATACTAGTTACTGGGTGGTTGTTTTTATGTTATATTATAAATGATCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCTTGAAAATTTTATAAATGCATATAT  >  USA300TCH1516_ALE/909515‑909695

ttattcatacccttgccctttgtttcaaaattatgccctttttttgcccttgaaaacAACCACACCACCTATTAATTTAGGAGTGTGgttg                                                                                             >  1:512730‑M1/58‑91 (MQ=255)

tACGCCACTCATACTAGTTACTGGGTGGTTGTTTTTATGTTATATTATAAATGATCAAACCACACCACCTATTAATTTAGGAGTGTGgttg                                                                                             <  1:1476615/91‑1 (MQ=255)

 aCGCCACTCATACTAGTTACTGGGTGGTTGTTTTTATGTTATATTATAAATGATCAAACCACACCACCTATTAATTTAGGAGTGTGgttgt                                                                                            >  1:2091183/1‑91 (MQ=255)

    ccACTCATACTAGTTACTGGGTGGTTGTTTTTATGTTATATTATAAATGATCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGtttt                                                                                         >  1:2321361/1‑91 (MQ=255)

    ccACTCATACTAGTTACTGGGTGGTTGTTTTTATGTTATATTATAAATGATCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGtttt                                                                                         >  1:1986561/1‑91 (MQ=255)

     cACTCATACTAGTTACTGGGTGGTTGTTTTTATGTTATATTATAAATGATCAAACCACACCACCTATTACTTTAGGAGTGTGGTTGTTTTc                                                                                        >  1:2930523/1‑91 (MQ=255)

     cACTCATACTAGTTACTGGGTGGTTGTTTTTATGTTATATTATAAATGATCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTc                                                                                        >  1:3829620/1‑91 (MQ=255)

     cACTCATACTAGTTACTGGGTGGTTGTTTTTATGTTATATTATAAATGATCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTc                                                                                        >  2:1184716/1‑91 (MQ=255)

       cTCATACTAGTTACTGGGTGGTTGTTTTTATGTTATATTATAAATGATCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCaa                                                                                      <  2:2484011/91‑1 (MQ=255)

          aTACTAGTTACTGGGTGGTTGTTTTTATGTTATATTATAAATGATCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAggg                                                                                   >  2:68460/1‑91 (MQ=255)

            aCTAGTTACTGGGTGGTTGTTTTTATGTTATATTATAAATGATCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAgggat                                                                                 >  2:2494552/1‑89 (MQ=255)

            aCTAGTTACTGGGTGGTTGTTTTTATGTTATATTATAAATGATCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑a                                                                                <  2:1448896/91‑1 (MQ=255)

             cTAGTTACTGGGTGGTTGTTTTTATGTTATATTATAAATGATCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑aa                                                                               <  1:1104339/91‑1 (MQ=255)

              tAGTTACTGGGTGGTTGTTTTTATGTTATATTATATATGATCATACTATACTACCTATTATTTTAGGATTGTGGTTGTTTTCAAGGGC‑ata                                                                              >  2:3404456/1‑89 (MQ=255)

              tAGTTACTGGGTGGTTGTTTTTATGTTATATTATAAATGATCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑aaa                                                                              <  2:761419/91‑1 (MQ=255)

              tAGTTACTGGGTGGTTGTTTTTATGTTATATTATAAATGATCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑aaa                                                                              >  1:2964406/1‑91 (MQ=255)

              tAGTTACTGGGTGGTTGTTTTTATGTTATATTATAAATGATCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑aaa                                                                              <  1:2862362/91‑1 (MQ=255)

                    cTGGGTGGTTGTTTTTATGTTATATTATAAATGATCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAgg                                                                        <  2:2321361/91‑1 (MQ=255)

                     tGGGTGGTTGTTTTTATGTTATATTATAAATGATCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAggg                                                                       >  2:2364535/1‑91 (MQ=255)

                     tGGGTGGTTGTTTTTATGTTATATTATAAATGATCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAggg                                                                       <  1:2510792/91‑1 (MQ=255)

                      gggTGGTTGTTTTTATGTTATATTATAAATGATCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGc                                                                      <  1:3202907/91‑1 (MQ=255)

                      gggTGGTTGTTTTTATGTTATATTATAAATGATCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGc                                                                      <  2:1433148/91‑1 (MQ=255)

                      gggTGGTTGTTTTTATGTTATATTATAAATGATCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGc                                                                      >  1:137107/1‑91 (MQ=255)

                         tggtTGTTTTTATGTTATATTATAAATGATCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATa                                                                   <  1:3804436/91‑1 (MQ=255)

                         tggtTGTTTTTATGTTATATTATAAATGATCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATa                                                                   <  1:1295692/91‑1 (MQ=255)

                              gttTTTATGTTATATTATAAATGATCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAAtttt                                                              >  2:240329/1‑91 (MQ=255)

                              gttTTTATGTTATATTATAAATGATCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑‑AAAAAAGGGCATAATTTTg                                                             >  2:1634923/1‑91 (MQ=255)

                               tttttATGTTATATTATAAATGATCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGA‑AAAAAAAGGGCATAATTTTg                                                             <  2:2188585/91‑1 (MQ=255)

                                    aTGTTATATTATAAATGATCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACa                                                        <  1:417976/91‑1 (MQ=255)

                                    aTGTTATATTATAAATGATCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACa                                                        >  1:2458370/1‑91 (MQ=255)

                                    aTGTTATATTATAAATGATCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACa                                                        >  2:2736168/1‑91 (MQ=255)

                                     tGTTATATTATAAATGATCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACaa                                                       <  1:2408889/91‑1 (MQ=255)

                                     tGTTATATTATAAATGATCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACaa                                                       <  1:3268943/91‑1 (MQ=255)

                                        tatattataAATGATCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAgg                                                    >  2:3825560/1‑91 (MQ=255)

                                           attataAATGATCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCa                                                 >  1:2466756/1‑91 (MQ=255)

                                           attataAATGATCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCa                                                 >  1:2250144/1‑91 (MQ=255)

                                             tataAATGATCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAg                                               >  1:1517901/1‑91 (MQ=255)

                                                aaaTGATCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGt                                            >  2:1360347/1‑91 (MQ=255)

                                                aaaTGATCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGt                                            >  1:161855/1‑91 (MQ=255)

                                                 aaTGATCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTa                                           >  1:3465798/1‑91 (MQ=255)

                                                  aTGATCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTAt                                          >  1:2373821/1‑91 (MQ=255)

                                                  aTGATCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTAt                                          <  2:3643587/91‑1 (MQ=255)

                                                  aTGATCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTAt                                          >  1:2853455/1‑91 (MQ=255)

                                                   tGATCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATg                                         <  2:110397/91‑1 (MQ=255)

                                                   tGATCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATg                                         >  2:3176854/1‑91 (MQ=255)

                                                    gATCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCTAGGGTATGa                                        >  1:3711685/1‑91 (MQ=255)

                                                    gATCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGa                                        >  2:1093852/1‑91 (MQ=255)

                                                     aTCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGaa                                       >  1:1399598/1‑91 (MQ=255)

                                                     aTCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGaa                                       <  1:1360347/91‑1 (MQ=255)

                                                      tCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGaat                                      <  1:2542812/91‑1 (MQ=255)

                                                      tCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGaat                                      >  1:1256717/1‑91 (MQ=255)

                                                      tCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGaat                                      >  1:2752781/1‑91 (MQ=255)

                                                       cAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGaata                                     >  1:2679978/1‑91 (MQ=255)

                                                        aaaCCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGaataa                                    <  1:3229190/91‑1 (MQ=255)

                                                         aaccacactcctaaattaataggtggtgtggttGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGaataat                                   >  2:502689‑M2/34‑91 (MQ=255)

                                                         AACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGaataat                                   >  1:655322‑M1/1‑91 (MQ=255)

                                                          ACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATCAataata                                  <  2:3452276‑M1/91‑1 (MQ=255)

                                                           ccacactcctaaattaataggtggtgtggttGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAAtaataa                                 >  1:1352666‑M2/32‑91 (MQ=255)

                                                           CCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAAtaataa                                 <  1:2180592‑M1/91‑1 (MQ=255)

                                                           CCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAAtaataa                                 <  2:2778868‑M1/91‑1 (MQ=255)

                                                            CACACCACCTATTAATTTAGGAGTGTGGTTGTTTAAAAGGGA‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATaaa                                >  2:3210957‑M1/1‑91 (MQ=255)

                                                               actcctaaattaataggtggtgtggttGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTa                             >  1:1175849‑M2/28‑91 (MQ=255)

                                                               actcctaaattaataggtggtgtggttGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTa                             >  1:3332445‑M2/28‑91 (MQ=255)

                                                               actcctaaattaataggtggtgtcgttGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTa                             >  1:3070598‑M2/28‑91 (MQ=255)

                                                               ACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTa                             >  2:129155‑M1/1‑91 (MQ=255)

                                                                ctcctaaattaataggtggtgtggttGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTAt                            >  2:2642989‑M2/27‑91 (MQ=255)

                                                                 caccTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATc                           <  2:2930523/91‑1 (MQ=255)

                                                                 caccTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATc                           >  2:449243/1‑91 (MQ=255)

                                                                  cctaaataaataggtggtgtggttGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTAACt                          >  2:1906227‑M2/25‑91 (MQ=255)

                                                                  accTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCt                          <  1:3632781/91‑1 (MQ=255)

                                                                  accTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCt                          <  1:1872120/91‑1 (MQ=255)

                                                                  accTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCt                          <  1:2866725/91‑1 (MQ=255)

                                                                  accTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCt                          <  2:1047337/91‑1 (MQ=255)

                                                                   ctaaattaataggtggtgtggttGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCtt                         >  2:1127407‑M2/24‑91 (MQ=255)

                                                                   ccTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGa                                                            >  2:1774158/1‑56 (MQ=255)

                                                                    cTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAATGGCAAGGGTATGAATAATAAATTATCTTg                        <  2:3372716/91‑1 (MQ=255)

                                                                    cTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCTTg                        <  2:327814/91‑1 (MQ=255)

                                                                    cTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCTTg                        <  2:3093054/91‑1 (MQ=255)

                                                                    cTATTAATTTAGGAGTGTGGTTGTTTTAAAGAGA‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCTTg                        <  2:3092385/91‑1 (MQ=255)

                                                                       ttattttAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCTTGaaa                     >  2:2879800/5‑91 (MQ=255)

                                                                       ttAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCTTGaaa                     >  2:3765333/1‑91 (MQ=255)

                                                                         aaTTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCTTGAAAAt                   <  1:1221098/91‑1 (MQ=255)

                                                                          aataggtggtgtggttGTTTTCAAGGGCAAAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCTTGAAAAt                   >  1:876753‑M2/17‑91 (MQ=255)

                                                                          aTTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCTTGAAAAtt                  <  2:918472/91‑1 (MQ=255)

                                                                          aTTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCTTGAAAAtt                  <  2:3882451/91‑1 (MQ=255)

                                                                          aTTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCTTGAAAAtt                  >  2:804493/1‑91 (MQ=255)

                                                                          aTTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCTTGAAAAtt                  <  2:917737/91‑1 (MQ=255)

                                                                          aTTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCTTGAAAAtt                  >  1:1401252/1‑91 (MQ=255)

                                                                          aTTTAGAAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCTTGAAGAtt                  >  1:3011576/1‑91 (MQ=255)

                                                                           tttAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCTTGAAAAttt                 <  1:1969548/91‑1 (MQ=255)

                                                                            ttAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCTTGAAAAtttt                <  2:187684/91‑1 (MQ=255)

                                                                             tAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCTTGAAAATTTta               <  1:3157638/91‑1 (MQ=255)

                                                                              aGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCTTGAAAATTTtat              >  1:845060/1‑91 (MQ=255)

                                                                                 aGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCTTGAAAATTTTATaaa           <  2:1726187/91‑1 (MQ=255)

                                                                                   tgtggttGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCTTGAAAATTTTATAAATg         >  2:2727850‑M2/8‑91 (MQ=255)

                                                                                   tgtggttGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCTTGAAAATTTTATAAATg         >  1:2343289‑M2/8‑91 (MQ=255)

                                                                                    gtggttGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCTTGAAAATTTTATAAATGc        >  1:575861‑M2/7‑91 (MQ=255)

                                                                                    gtggttGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCTTGAAAATTTTATAAATGc        >  2:559889‑M2/7‑91 (MQ=255)

                                                                                          gttTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCTTGAAAATTTTATAAATGCatatat  <  2:2660052/91‑1 (MQ=255)

                                                                                          gttTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCTTGAAAATTTTATAAATGCatatat  <  2:1949737/91‑1 (MQ=255)

TACGCCACTCATACTAGTTACTGGGTGGTTGTTTTTATGTTATATTATAAATGATCAAACCACACCACCTATTAATTTAGGAGTGTGGTTGTTTTCAAGGGC‑AAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCTTGAAAATTTTATAAATGCATATAT  >  USA300TCH1516_ALE/909515‑909695

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.