BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	932460 =	154 (0.810)	17 (0.110)	13/136	NT	10.6%	intergenic (+6/+257)	USA300HOU_RS04635/nfuA	hypothetical protein/Fe/S biogenesis protein NfuA
*	?	USA300TCH1516_ALE	932506 =	155 (0.960)	17 (0.110)	13/136	NT	10.6%	intergenic (+52/+211)	USA300HOU_RS04635/nfuA	hypothetical protein/Fe/S biogenesis protein NfuA

Only 100 of 264 total aligned reads displayed.

GTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGTATAAAAT  >  USA300TCH1516_ALE/932417‑932595

gTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTCTGATTGAGCGTATGTGCTAttttt                                                                                          <  1:495108/91‑1 (MQ=255)

 tGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTta                                                                                         <  2:2111787/91‑1 (MQ=255)

 aagcacatattactattctattctatgaaatttaaaatataaAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTta                                                                                         >  2:1768345‑M1/43‑91 (MQ=255)

   gcacatattactattctattctatgaaatttaaaatataaAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTtata                                                                                       >  1:1017868‑M1/41‑91 (MQ=255)

   aaCCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTtata                                                                                       <  2:648970/91‑1 (MQ=255)

    aCCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTatat                                                                                      <  2:3297530/91‑1 (MQ=255)

    aCCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTatat                                                                                      >  2:2013546/1‑91 (MQ=255)

     ccACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATAtt                                                                                     >  2:2429935/1‑91 (MQ=255)

     ccACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATAtt                                                                                     <  2:1644722/91‑1 (MQ=255)

      catattactattctattctatgaaatttaaaatataaAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATAttt                                                                                    >  1:1454197‑M1/38‑91 (MQ=255)

      catagtactattctattctatgaaatttaaaatataaAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATAttt                                                                                    >  2:3527431‑M1/38‑91 (MQ=255)

      cacaACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATAttt                                                                                    <  1:1829311/91‑1 (MQ=255)

        caACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTa                                                                                  <  1:705091/91‑1 (MQ=255)

        caACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTa                                                                                  <  1:1128544/91‑1 (MQ=255)

            cTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAAtt                                                                              >  1:2499355/1‑91 (MQ=255)

              gAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTc                                                                            <  2:494208/91‑1 (MQ=255)

               aaGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCa                                                                           >  2:1467852/1‑91 (MQ=255)

                   aGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCataga                                                                       <  2:314069/91‑1 (MQ=255)

                    gATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCatagaa                                                                      >  2:2006115/1‑91 (MQ=255)

                    gATAAACCTAAAAATTAAAATACAAACAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCatagaa                                                                      >  2:2210651/1‑91 (MQ=255)

                     aTAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCatagaat                                                                     <  1:1758443/91‑1 (MQ=255)

                     aTAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCatagaat                                                                     >  1:1702934/1‑91 (MQ=255)

                     aTAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCatagaat                                                                     >  2:1103693/1‑91 (MQ=255)

                     aTAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCatagaat                                                                     <  1:2093731/91‑1 (MQ=255)

                     aTAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCatagaat                                                                     >  2:690596/1‑91 (MQ=255)

                       ctatgaaatttaaaatataaaaatagcacatacgctcaatcaaaatcgttgagttatgtgctatttGTATATTTTAAATTTCatagaatag                                                                   >  1:3727314‑M2/67‑91 (MQ=255)

                       aaaCCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCatagaatag                                                                   <  2:2074153/91‑1 (MQ=255)

                        aaCCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCatagaataga                                                                  >  1:2818465/1‑91 (MQ=255)

                         aCCTAGAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCAtagaatagaa                                                                 <  2:3582670/91‑1 (MQ=255)

                         aCCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCAtagaatagaa                                                                 >  1:3847575/1‑91 (MQ=255)

                           cTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAgaatagaata                                                               >  2:1960841/1‑91 (MQ=255)

                             aaaaaTTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGt                                                             >  1:2339496/1‑91 (MQ=255)

                             aaaaaTTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGt                                                             <  2:1295483/91‑1 (MQ=255)

                                aaTTAAAATACAAATAGCACATAACTCAACGCTTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAACAGAATAGTAat                                                          >  2:2961918/1‑91 (MQ=255)

                                aaTTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAat                                                          >  1:950885/1‑91 (MQ=255)

                                aaTTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAat                                                          <  1:1574724/91‑1 (MQ=255)

                                 aTTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAata                                                         <  1:1207651/91‑1 (MQ=255)

                                    aaaaTACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATAtgt                                                      >  2:1017592/1‑91 (MQ=255)

                                     aaaTACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATAtgtg                                                     >  1:1487002/1‑91 (MQ=255)

                                      tataaaaatagcacatacgctcaatcaaaatcgttgagttatgtgctatttGTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGc                                                    >  1:1464693‑M2/52‑91 (MQ=255)

                                      aaTACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGc                                                    >  1:551762/1‑91 (MQ=255)

                                       ataaaaatagcacatacgctcaatcaaaatcgttgagctatgtgctatttTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCt                                                   >  2:1450440‑M2/51‑91 (MQ=255)

                                       aTACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCt                                                   >  1:1805198/1‑91 (MQ=255)

                                       aTACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCt                                                   <  1:79039/91‑1 (MQ=255)

                                        taaaaatagcacatacgctcaatcaaaatcgttgagttatgtgctatttTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCtt                                                  >  2:1770641‑M2/50‑91 (MQ=255)

                                         aCAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTg                                                 <  1:1778463/91‑1 (MQ=255)

                                         aCAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTg                                                 >  2:3103692/1‑91 (MQ=255)

                                         aCAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTg                                                 <  1:3188284/91‑1 (MQ=255)

                                           AAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGa                                               >  2:1543448‑M1/1‑91 (MQ=255)

                                            AATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGat                                              >  2:2569071‑M1/1‑91 (MQ=255)

                                            AATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGat                                              >  2:546448‑M1/1‑91 (MQ=255)

                                                GCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATAtgt                                          <  1:125685‑M1/91‑1 (MQ=255)

                                                GCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATAtgt                                          >  2:2334980‑M1/1‑91 (MQ=255)

                                                  acatacgctcaatcaaaatcgttgagttatgtgctatttTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTgg                                        >  2:1681970‑M2/40‑91 (MQ=255)

                                                  ACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTgg                                        >  2:263684‑M1/1‑91 (MQ=255)

                                                   catacgctcaatcaaaatcgttgagttatgtgctatttTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGc                                       >  1:3794709‑M2/39‑91 (MQ=255)

                                                   CATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGc                                       >  1:2840720‑M1/1‑91 (MQ=255)

                                                   CATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGc                                       >  1:2013049‑M1/1‑91 (MQ=255)

                                                   CATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGc                                       >  1:597333‑M1/1‑91 (MQ=255)

                                                    ATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCa                                      >  1:221237‑M1/1‑91 (MQ=255)

                                                    ATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCa                                      <  1:3431876‑M1/91‑1 (MQ=255)

                                                    ATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAACTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCa                                      <  2:3413573‑M1/91‑1 (MQ=255)

                                                      AACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAAt                                    <  2:3376916‑M1/91‑1 (MQ=255)

                                                      AACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAAt                                    <  1:2734271‑M1/91‑1 (MQ=255)

                                                      AACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAAt                                    <  2:1823385‑M1/91‑1 (MQ=255)

                                                      AACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAAt                                    <  1:955724‑M1/91‑1 (MQ=255)

                                                          cAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAataata                                <  1:854463/91‑1 (MQ=255)

                                                           aaCGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAAtaataa                               <  2:302032/91‑1 (MQ=255)

                                                            aCGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATaataaa                              >  2:2330388/1‑91 (MQ=255)

                                                             cGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATaataaaa                             >  1:3696193/1‑91 (MQ=255)

                                                             cGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATaataaaa                             >  1:1906318/1‑91 (MQ=255)

                                                              gATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATaataaaat                            <  2:1377515/91‑1 (MQ=255)

                                                              gATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATaataaaat                            <  1:3406437/91‑1 (MQ=255)

                                                               aTTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATaataaaata                           >  1:3209283/1‑91 (MQ=255)

                                                               aTTTTGATTGAGCGTATGTGCTATTATTATATTTTAAATATCATAGAATAGAAGAGTAATATGTGCTTGGATATGTGGCAATaataaaata                           <  1:3610864/91‑1 (MQ=255)

                                                                 tttGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATATAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAaataat                         <  1:3868069/91‑1 (MQ=255)

                                                                 tttGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAaataat                         <  2:621779/91‑1 (MQ=255)

                                                                 aaatcgttgagttatgtgctatttTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAaataat                         >  2:60381‑M2/25‑91 (MQ=255)

                                                                  ttgattgaGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAAtaatt                        <  1:2915371/91‑1 (MQ=255)

                                                                   tgattgaGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAAtaatta                       >  2:2807341/1‑91 (MQ=255)

                                                                   tgattgaGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAAtaatta                       >  1:3370422/1‑91 (MQ=255)

                                                                    gattgaGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAAtaattaa                      >  2:753525/1‑91 (MQ=255)

                                                                       tgaGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCa                   <  1:1617699/91‑1 (MQ=255)

                                                                       tgaGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCa                   >  1:2247625/1‑91 (MQ=255)

                                                                        gaGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAg                  <  2:519744/91‑1 (MQ=255)

                                                                          gCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGAt                >  1:3657667/1‑91 (MQ=255)

                                                                            gTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATaa              <  2:3043121/91‑1 (MQ=255)

                                                                            gTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATaa              <  1:3114421/91‑1 (MQ=255)

                                                                              atgtgctatttTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAAt            <  2:2167836‑M2/80‑1 (MQ=255)

                                                                              atgtgctatttTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAAt            >  2:3814938‑M2/12‑91 (MQ=255)

                                                                                gtgctatttTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGAGGCAATAATAAAATAATTAATCAGATAAATAg          >  1:3297495‑M2/10‑91 (MQ=255)

                                                                                 tgctatttTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGt         <  2:926172‑M2/83‑1 (MQ=255)

                                                                                  gctatttTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGta        >  2:2508743‑M2/8‑91 (MQ=255)

                                                                                  gctatttTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGta        >  1:1517160‑M2/8‑91 (MQ=255)

                                                                                   ctatttTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGtat       >  1:2949807‑M2/7‑91 (MQ=255)

                                                                                      tttTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGTATaaa    <  2:316091‑M2/88‑1 (MQ=255)

                                                                                      tttTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGTATaaa    <  2:1070191‑M2/88‑1 (MQ=255)

                                                                                       ttTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGTATaaaa   >  1:1028948‑M2/3‑91 (MQ=255)

                                                                                        tTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGTATAAAAt  <  1:838505‑M2/90‑1 (MQ=255)

                                                                                        tTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGTATAAAAt  <  1:1441749‑M2/90‑1 (MQ=255)

GTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGTATAAAAT  >  USA300TCH1516_ALE/932417‑932595

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.