BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	932628 =	220 (1.150)	24 (0.140)	14/142	NT	12.1%	intergenic (+174/+89)	USA300HOU_RS04635/nfuA	hypothetical protein/Fe/S biogenesis protein NfuA
*	?	USA300TCH1516_ALE	932675 =	154 (0.910)	24 (0.140)	14/142	NT	12.1%	intergenic (+221/+42)	USA300HOU_RS04635/nfuA	hypothetical protein/Fe/S biogenesis protein NfuA

Only 100 of 260 total aligned reads displayed.

TAGTATAAAATAACTTTCCCATCAGTCCAATTTGACAGCGAAAAAAGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAGAATACTTGTTCTACTTCTATTACACCAGGCACTTCTTCGTGTAAT  >  USA300TCH1516_ALE/932585‑932765

tAGTATAAAATAACTTTCCCATCAGTCCAATTTGACAGCGAAAAAAGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTttg                                                                                            <  1:3565087/91‑1 (MQ=255)

tAGTATAAAATAACTTTCCCATCAGTCCAATTTGACAGCGAAAAAAGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTttg                                                                                            >  1:3048536/1‑91 (MQ=255)

tAGTATAAAATAACTTTCCCATCAGTCCAATTTGACAGCGAAAAAAGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTttg                                                                                            >  2:1124816/1‑91 (MQ=255)

tAGTATAAAATAACTTTCCCATCAGTCCAATTTGACAGCGAAAAAAGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTttg                                                                                            <  1:2508743/91‑1 (MQ=255)

tAGTATAAAATAACTTTCCCATCAGACCAATTTGACAGCGAAAAAAGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTttg                                                                                            <  2:2053352/91‑1 (MQ=255)

  gTATAAAATAACTTTCCCATCAGTCCAATTTGACAGCGAAAAAAGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTttgtt                                                                                          >  1:3696043/1‑91 (MQ=255)

  gTATAAAATAACTTTCCCATCAGTCCAATTTGACAGCGAAAAAAGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTttgtt                                                                                          <  2:1028948/91‑1 (MQ=255)

    ataAAATAACTTTCCCATCAGTCCAATTTGACAGCGAAAAAAGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTTtgttgt                                                                                        >  1:3127389/1‑91 (MQ=255)

    ataAAATAACTTTCCCATCAGTCCAATTTGACAGCGAAAAAAGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTTtgttgt                                                                                        >  1:2825298/1‑91 (MQ=255)

     taAAATAACTTTCCCATCAGTCCAATTTGACAGCGAAAAAAGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTTTgttgtt                                                                                       <  1:642129/91‑1 (MQ=255)

         aTAACTTTCCCATCAGTCCAAGGTGACAGAGAAAAAAGACAGGTAATAACTGATTATAAAAAATTCAGTATTCCTGAACTTGTTGTTATTc                                                                                   >  1:1675887/1‑91 (MQ=255)

          tAACTTTCCCATCAGTCCAATTTGACAGCGAAAAAAGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCa                                                                                  <  2:1487002/91‑1 (MQ=255)

            aCTTTCCCATCAGTCCAATTTGACAGCGAAAAAAGACAGGTAATAACTGATTGTAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCata                                                                                <  2:1399714/91‑1 (MQ=255)

            aCTTTCCCATCAGTCCAATTTGACAGCGAAAAAAGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCata                                                                                >  2:197590/1‑91 (MQ=255)

              tttCCCATCAGTCCAATTTGACAGCGAAAAAAGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCataat                                                                              <  1:2046714/91‑1 (MQ=255)

              tttCCCATCAGTCCAATTTGACAGCGAAAAAAGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCataat                                                                              >  2:1334698/1‑91 (MQ=255)

               ttCCCATCAGTCCAATTTGACAGCGAAAAAAGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCataata                                                                             >  1:244249/1‑91 (MQ=255)

                tCCCATCAGTCCAATTTGACAGCGAAAAAAGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAatat                                                                            >  1:97218/1‑91 (MQ=255)

                tCCCATCAGTCCAATAAAAAAGAAAAAAAAGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAatat                                                                            <  2:2734271/91‑1 (MQ=255)

                 cccATCAGTCCAATTTGACAGCGAAAAAAGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAATATg                                                                           <  2:336216/91‑1 (MQ=255)

                 cccATCAGTCCAATTAGACAGCGAAAAAAGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAATATg                                                                           <  2:1249363/91‑1 (MQ=255)

                  ccATCAGTCCACATTGACAGAGATAAAAGACAGGTAATAACTGATTATAAATAATTCAGGATTCCTGTCTTTGTTGTTATTCATAATATGt                                                                          <  2:2959953/91‑1 (MQ=255)

                  ccATCAGTCCAATTTGACAGCGAAAAAAGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGt                                                                          <  1:690521/91‑1 (MQ=255)

                   cATCAGTCCAATTTGACAGCGATAAAAGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGtt                                                                         <  2:3123386/91‑1 (MQ=255)

                   cATCAGTCCAATTTGACAGCGAAAAAAGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATTATATGtt                                                                         >  1:1941271/1‑91 (MQ=255)

                   cATCAGTCCAATTTGACAGCGAAAAAAGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGtt                                                                         <  2:2761908/91‑1 (MQ=255)

                    aTCAGTCCAATTTGACAGCGAAAAAAGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTc                                                                        >  2:1478788/1‑91 (MQ=255)

                     tCAGTCCAATTTGACAGCGAAAAAAGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCt                                                                       >  1:1867297/1‑91 (MQ=255)

                     tCAGTCCAATTTGACAGCGAAAAAAGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCt                                                                       <  2:3696482/91‑1 (MQ=255)

                       aGTCCAATTTGACAGCGAAAAAAGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGt                                                                     <  1:2649361/91‑1 (MQ=255)

                          ccAATTTGACAGCGAAAAAAGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGt                                                                     <  1:730484/88‑1 (MQ=255)

                            aaTTTGACAGCGAAAAAAGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACt                                                                <  1:888298/91‑1 (MQ=255)

                             ttatgaataacaacaaagacaggaatactgaattatttataatcagttattacctgtctttGTTGTTATTCATAATATGTTCTGTTAACtt                                                               >  1:1441106‑M2/62‑91 (MQ=255)

                             aTTTGACAGCGAAAAAAGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACtt                                                               <  1:3376916/91‑1 (MQ=255)

                             aTTTGACAGCGAAAAAAGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACtt                                                               >  1:3417241/1‑91 (MQ=255)

                               ttGACAGCGAAAAAAGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTaa                                                             <  2:1810810/91‑1 (MQ=255)

                                tGACAGCGAAAAAAGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAat                                                            >  1:1965117/1‑91 (MQ=255)

                                  aCAGCGAAAAAAGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAatat                                                          >  1:2570158/1‑91 (MQ=255)

                                   cAGCGAAAAAAGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATc                                                         <  2:1765390/91‑1 (MQ=255)

                                   cAGCGAAAAAAGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATc                                                         <  1:1075719/91‑1 (MQ=255)

                                    agagAAAAAAGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATCt                                                        <  2:2247625/88‑1 (MQ=255)

                                    aGCGAAAAAAGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATCt                                                        >  2:2940603/1‑91 (MQ=255)

                                     gCGAAAAAAGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATCtt                                                       <  2:3297495/91‑1 (MQ=255)

                                     gCGAAAAAAGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATCtt                                                       >  2:765137/1‑91 (MQ=255)

                                      cGAAAAAAGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATCttt                                                      <  1:1778302/91‑1 (MQ=255)

                                          aaaaGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTatat                                                  >  2:834130/1‑91 (MQ=255)

                                          aaaaGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTatat                                                  >  1:1466156/1‑91 (MQ=255)

                                           AAAGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATAtt                                                 >  1:2140875‑M1/1‑91 (MQ=255)

                                             AGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAg                                               >  2:3696070‑M1/1‑91 (MQ=255)

                                             AGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAg                                               <  2:3260365‑M1/91‑1 (MQ=255)

                                             AGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAg                                               >  2:2471285‑M1/1‑91 (MQ=255)

                                              gacaggaatactgaattatttataatcagttattacctgtctttGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAGa                                              >  2:1700062‑M2/45‑91 (MQ=255)

                                              GACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAGa                                              >  2:593571‑M1/1‑91 (MQ=255)

                                               acaggaatactgaattatttataatcagttattacctgtctttGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAGaa                                             >  2:3397675‑M2/44‑91 (MQ=255)

                                                caggaatactgaattatttataatcagttattacctgtctttGTTGTTATTCATAATATGTTCTGTTAACTTAATATCt                                                        >  2:3676530‑M2/43‑79 (MQ=255)

                                                caggaatactgaattatttataatcagttattacctgtctttGTTGTTATTCATAATATGTTCTGTTAACTTAATATCt                                                        <  1:1727396‑M2/37‑1 (MQ=255)

                                                caggaatactgaattatttataatcagttattacctgtctttGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAGAAt                                            >  1:379528‑M2/43‑91 (MQ=255)

                                                caggaatactgaattatttataatcagttattacctgtctttGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAGAAt                                            >  2:3086906‑M2/43‑91 (MQ=255)

                                                CAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAGAAt                                            <  2:592056‑M1/91‑1 (MQ=255)

                                                 aggaatactgaattatttataatcagttattacctgtctttGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAGAATa                                           >  1:1035792‑M2/42‑91 (MQ=255)

                                                 aggaatactgaattatttataatcagttattacctgtctttGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAGAATa                                           >  1:2468834‑M2/42‑91 (MQ=255)

                                                   gaatactgaattatttataatcagttattacctgtctttGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAGAATACt                                         >  1:588118‑M2/40‑91 (MQ=255)

                                                   GTAATAACTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAGAATACt                                         <  1:3853824‑M1/91‑1 (MQ=255)

                                                   GTAATAACTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAGAATACt                                         <  1:1266103‑M1/91‑1 (MQ=255)

                                                     aataaCTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAGAATACTTg                                       <  1:402333/91‑1 (MQ=255)

                                                       taaCTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAGAATACTTGtt                                     >  1:3298472/1‑91 (MQ=255)

                                                        tactgaattatttataatcagtattcctgtctctGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAGAATACTTGTTc                                    >  1:1395841‑M2/35‑91 (MQ=255)

                                                        aaCTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAGAATACTTGTTc                                    <  1:814749/91‑1 (MQ=255)

                                                         aCTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAGAATACTTGTTCt                                   <  1:3570012/91‑1 (MQ=255)

                                                         aCTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAGAATACTTGTTCt                                   <  1:19278/91‑1 (MQ=255)

                                                         aCTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAGAATACTTGTTCt                                   <  1:1204602/91‑1 (MQ=255)

                                                          cTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAGAATACTTGTTCTa                                  >  1:2972017/1‑91 (MQ=255)

                                                             aTTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAGAATACTTGTTCTACtt                               <  2:2434489/91‑1 (MQ=255)

                                                              ttATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAGAATACTTGTTCTACTTc                              <  2:1454197/91‑1 (MQ=255)

                                                              ttATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAGAATACTTGTTCTACTTc                              <  2:732480/91‑1 (MQ=255)

                                                               tataAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAGAATACTTGTTCTACTTCt                             <  2:462551/91‑1 (MQ=255)

                                                                ataaataaTTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAGAATACTTGTTCTACTTCTa                            >  1:516395/1‑91 (MQ=255)

                                                                 taaataaTTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAGAATACTTGTTCTACTTCTAt                           <  2:1287366/91‑1 (MQ=255)

                                                                 taaataaTTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAGAATACTTGTTCTACTTCTAt                           >  1:2334539/1‑91 (MQ=255)

                                                                   aataatTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAGAATACTTGTTCTACTTCTATTa                         <  2:2581138/91‑1 (MQ=255)

                                                                   aataatTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAGAATACTTGTTCTACTTCTATTa                         <  2:3043627/91‑1 (MQ=255)

                                                                    atattTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAGAATACTTGTTCTACTTCTATTac                        <  1:3497169/91‑1 (MQ=255)

                                                                    ataatTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAGAATACTTGTTCTACTTCTATTac                        <  1:845702/91‑1 (MQ=255)

                                                                    ataatTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAGAATACTTGTTCTACTTCTATTac                        <  1:558288/91‑1 (MQ=255)

                                                                    ataatTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAGAATACTTGTTCTACTTCTATTac                        <  2:1965117/91‑1 (MQ=255)

                                                                       atTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAGAATACTTGTTCTACTTCTATTACAcc                     >  1:3206958/1‑91 (MQ=255)

                                                                         tCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAGAATACTTGTTCTACTTCTATTACACCAg                   >  1:1046878/1‑91 (MQ=255)

                                                                            ttATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAGAATACTTGTTCTACTTCTATTACACCAGGCa                <  2:3852091/90‑1 (MQ=255)

                                                                            gTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAGCTTAATATCTTTATATTAGAATACTTGTTCTACTTCTATTACACCAGGCa                <  2:2931429/91‑1 (MQ=255)

                                                                             tATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAGAATACTTGTTCTACTTCTATTACACCAGGCAc               <  2:317448/91‑1 (MQ=255)

                                                                             tATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAGAATACTTGTTCTACTTCTATTACACCAGGCAc               <  1:1554152/91‑1 (MQ=255)

                                                                             tATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAGAATACTTGTTCTACGTCTATTACACCAGGCAc               >  1:3323169/1‑91 (MQ=255)

                                                                               ttCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAGAATACTTGTTCTACTTCTATTACACCAGGCActt             <  1:2545378/91‑1 (MQ=255)

                                                                               ttCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAGAATACTTGTTCTACTTCTATTACACCAGGCActt             <  1:919239/91‑1 (MQ=255)

                                                                               ttCCTGTCTTTGTTGTTATTCATAATATGTTCAGTTAACTTAATATCTTTATATTAGAATACTTGTTCTACTTCTATTACACCAGGCActt             >  2:3803120/1‑91 (MQ=255)

                                                                                tCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAGAATACTTGTTCTACTTCTATTACACCAGGCActtc            <  1:3814938/91‑1 (MQ=255)

                                                                                   tgtctttGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAGAATACTTGTTCTACTTCTATTACACCAGGCACttcttc         <  2:2898839‑M2/84‑1 (MQ=255)

                                                                                   tgtctttGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAGAATACTTGTTCTACTTCTATTACACCAGGCACttcttc         <  2:2339496‑M2/84‑1 (MQ=255)

                                                                                        ttGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAGAATACTTGTTCTACTTCTATTACACCAGGCACTTCTTCGTGTa    <  1:2581873‑M2/89‑1 (MQ=255)

                                                                                          gttgttATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAGAATACTTGTTCTACTTCTATTACACCAGGCACTTCTTCGTGTAAt  >  1:1451379/1‑91 (MQ=255)

TAGTATAAAATAACTTTCCCATCAGTCCAATTTGACAGCGAAAAAAGACAGGTAATAACTGATTATAAATAATTCAGTATTCCTGTCTTTGTTGTTATTCATAATATGTTCTGTTAACTTAATATCTTTATATTAGAATACTTGTTCTACTTCTATTACACCAGGCACTTCTTCGTGTAAT  >  USA300TCH1516_ALE/932585‑932765

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.