BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1117293 =	171 (0.900)	15 (0.100)	9/130	NT	10.7%	intergenic (+6/+148)	suhB_1/USA300TCH1516_01040	Inositol‑1‑monophosphatase/hypothetical protein
*	?	USA300TCH1516_ALE	1117341 =	112 (0.730)	15 (0.100)	9/130	NT	10.7%	intergenic (+54/+100)	suhB_1/USA300TCH1516_01040	Inositol‑1‑monophosphatase/hypothetical protein

Only 100 of 247 total aligned reads displayed.

ATTACATGAACAACGATTTAAAAGAAAATCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTAAATCAACGCGTGTTATTGT  >  USA300TCH1516_ALE/1117251‑1117431

aactggttttatattggcgcgtgtttttattatttaaggtatAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTta                                                                                            >  2:2874030‑M1/43‑91 (MQ=255)

aTTACATGAACAACGATTTAAAAGAAAATCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTta                                                                                            <  2:2249260/91‑1 (MQ=255)

aTTACATGAACAACGATTTAAAAGAAAATCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTta                                                                                            >  1:310736/1‑91 (MQ=255)

 ttACATGAACAACGATTTAAAAGAAAATCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTtat                                                                                           >  1:2792015/1‑91 (MQ=255)

  ctggttttatattggcgcgtgtttttattatttaaggtatAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATGTTACGCTTTtata                                                                                          >  1:1098249‑M1/41‑91 (MQ=255)

   aCATGAACAACGATTTAAAAGAAAATCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATAc                                                                                         >  2:3047116/1‑91 (MQ=255)

   aCATGAACAACGATTTAAAAGAAAATCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATAc                                                                                         <  2:2601669/91‑1 (MQ=255)

   aCATGAACAACGATTTAAAAGAAAATCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATAc                                                                                         <  1:3182871/91‑1 (MQ=255)

      tGAACAACGATTTAAAAGAAAATCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCtt                                                                                      <  1:3358876/91‑1 (MQ=255)

      tGAACAACGATTTAAAAGAAAATCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCtt                                                                                      >  1:1527876/1‑91 (MQ=255)

        aacaacGATTTAAAAGAAAATCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTaa                                                                                    >  1:718703/1‑91 (MQ=255)

         acaacGATTTAAAAGAAAATCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTaaa                                                                                   <  1:91827/91‑1 (MQ=255)

                tttAAAAGAAAATCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAACTAATaaa                                                                            >  2:3454218/1‑91 (MQ=255)

                tttAAAAGAAAATCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATaaa                                                                            >  1:2212441/1‑91 (MQ=255)

                 ttAAAAGAAAATCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATaaaa                                                                           >  2:1236387/1‑91 (MQ=255)

                     aaGAAAATCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAacac                                                                       >  1:3548318/1‑91 (MQ=255)

                      aGAAAATCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACAcg                                                                      <  2:2484354/91‑1 (MQ=255)

                      aGAAAATCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACAcg                                                                      <  1:3412030/91‑1 (MQ=255)

                      aGAAAATCAAAATAATTACCAAAAGCGTAATATGTAGACCTAACAATTAGGTAACATATTACGCTATTATACCTTAAATAATAAAGACAcg                                                                      >  1:3609415/1‑91 (MQ=255)

                        aaaaTCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACAcgcg                                                                    <  2:2148036/91‑1 (MQ=255)

                        aaaaTCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACAcgcg                                                                    >  2:2402240/1‑91 (MQ=255)

                          aaTCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGcc                                                                  <  1:1568470/91‑1 (MQ=255)

                          aaTCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGcc                                                                  >  2:1314046/1‑91 (MQ=255)

                           aTCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCa                                                                 >  1:826524/1‑91 (MQ=255)

                            tCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACATGCGCCaa                                                                >  2:3306327/1‑91 (MQ=255)

                            tCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACATGCGCCaa                                                                >  2:3307102/1‑91 (MQ=255)

                            tCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCaa                                                                >  1:485039/1‑91 (MQ=255)

                            tCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCaa                                                                >  2:2183570/1‑91 (MQ=255)

                             cAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAat                                                               <  1:2339652/91‑1 (MQ=255)

                              aaaaTAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAata                                                              >  1:527488/1‑91 (MQ=255)

                              aaaaTAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAata                                                              <  2:649534/91‑1 (MQ=255)

                               aaaTAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAatat                                                             >  2:2427885/1‑91 (MQ=255)

                               aaaTAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAatat                                                             >  2:2610171/1‑91 (MQ=255)

                               aaaTAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAatat                                                             >  1:110530/1‑91 (MQ=255)

                                 ataatTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATaa                                                           <  2:1180803/91‑1 (MQ=255)

                                    atTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATCTAAAAc                                                        >  2:3088665/1‑91 (MQ=255)

                                    atTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAAc                                                        >  2:3089569/1‑91 (MQ=255)

                                     ttACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACTCGCCAATATAAAAcc                                                       <  1:1143998/91‑1 (MQ=255)

                                      tACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCa                                                      <  1:36426/91‑1 (MQ=255)

                                      tACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCa                                                      <  2:1996369/91‑1 (MQ=255)

                                      tACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCa                                                      >  1:2351240/1‑91 (MQ=255)

                                       aCCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAg                                                     >  2:2907500/1‑91 (MQ=255)

                                        ccAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGt                                                    >  2:459040/1‑91 (MQ=255)

                                          AAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTa                                                  >  1:2590986‑M1/1‑91 (MQ=255)

                                            AAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTaaa                                                >  2:1751916‑M1/1‑91 (MQ=255)

                                            AAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTaaa                                                >  1:1633491‑M1/1‑91 (MQ=255)

                                             AGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAAt                                               >  2:819727‑M1/1‑91 (MQ=255)

                                              gcgtaatatgttacctaattgttaggactacatattacgcttttATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATg                                              >  2:3369165‑M2/45‑91 (MQ=255)

                                              GCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATg                                              >  1:1714808‑M1/1‑91 (MQ=255)

                                               cgtaatatgttacctaattgttaggactacatagtacccttttATACCTTAAATAATAATAACACGCGCCAATATAAAACCAGTTAAATGt                                             >  1:3094185‑M2/44‑91 (MQ=255)

                                               CGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGt                                             <  1:3326575‑M1/91‑1 (MQ=255)

                                                gtaatatgttacctaattgttaggactacatattacgcttttATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGtt                                            >  2:3077782‑M2/43‑91 (MQ=255)

                                                gtaatatgttacctaattgttaggactacatattacgcttttATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGtt                                            >  1:3869749‑M2/43‑91 (MQ=255)

                                                GTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGtt                                            >  1:3526188‑M1/1‑91 (MQ=255)

                                                  AATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTtca                                          <  2:1513767‑M1/91‑1 (MQ=255)

                                                   ATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTtcat                                         >  2:2877596‑M1/1‑91 (MQ=255)

                                                   ATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTtcat                                         <  2:1909591‑M1/91‑1 (MQ=255)

                                                    TATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGttcatg                                        >  2:3536386‑M1/1‑90 (MQ=255)

                                                    TATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGttcatg                                        >  2:3176145‑M1/1‑90 (MQ=255)

                                                    TATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTtcatc                                        <  1:3700635‑M1/91‑1 (MQ=255)

                                                     ATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTtcatca                                       >  2:143948‑M1/1‑91 (MQ=255)

                                                      TGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTcatcat                                      >  1:650994‑M1/1‑91 (MQ=255)

                                                       gttacctaattgttaggactacatattacgcttttATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATg                                     >  1:2482927‑M2/36‑91 (MQ=255)

                                                       GTAGTCCTCACAATTAGGTAACATATTACGCTTGTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAatgttcatgatg                                     >  1:3448937‑M1/1‑87 (MQ=255)

                                                       GTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAatgttcatgatg                                     >  2:1077089‑M1/1‑87 (MQ=255)

                                                       GTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATg                                     <  1:1444930‑M1/91‑1 (MQ=255)

                                                        TAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCAtgatga                                    >  1:2627728‑M1/1‑91 (MQ=255)

                                                        TAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCAtgatga                                    >  2:1527876‑M1/1‑91 (MQ=255)

                                                        TAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGa                                    <  1:737161‑M1/91‑1 (MQ=255)

                                                         aGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATGATGaa                                   <  2:1649007/91‑1 (MQ=255)

                                                           tCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACa                                 <  1:891736/91‑1 (MQ=255)

                                                           tCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACa                                 <  1:1909591/91‑1 (MQ=255)

                                                               aaCAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACAtgtg                             <  1:2150839/91‑1 (MQ=255)

                                                                 cAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACAtgtgtg                           <  2:1970919/91‑1 (MQ=255)

                                                                  aaTTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTgg                          <  1:1513767/91‑1 (MQ=255)

                                                                    ttAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTc                        >  2:1449685/1‑91 (MQ=255)

                                                                      aGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCtt                      >  1:79609/1‑91 (MQ=255)

                                                                       ggTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTa                     >  1:126225/1‑91 (MQ=255)

                                                                       ggTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTa                     >  1:3782370/1‑91 (MQ=255)

                                                                       ggTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTa                     >  1:2455162/1‑91 (MQ=255)

                                                                        gTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTaa                    <  1:3379290/91‑1 (MQ=255)

                                                                        gTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTaa                    >  2:1141618/1‑91 (MQ=255)

                                                                        gTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTaa                    >  2:70737/1‑91 (MQ=255)

                                                                         tAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTaaa                   >  2:3678929/1‑91 (MQ=255)

                                                                          aaCATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTAAAt                  >  2:2092558/1‑91 (MQ=255)

                                                                           acatattacgcttttATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTAAATc                 >  1:1958323‑M2/16‑91 (MQ=255)

                                                                             atattacgcttttATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTAAATCaa               <  1:291195‑M2/78‑1 (MQ=255)

                                                                             atattacgcttttATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTAAATCaa               <  2:666945‑M2/78‑1 (MQ=255)

                                                                                ttacgcttttATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTAAATCAAcgc            >  1:2034709‑M2/11‑91 (MQ=255)

                                                                                 tacgcttttATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTAAATCAAcgcg           >  1:1824497‑M2/10‑91 (MQ=255)

                                                                                 tacgcttttATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTAAATCAAcgcg           <  1:2297834‑M2/82‑1 (MQ=255)

                                                                                 tacgcttttATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTAAATCAAcgcg           >  1:3232372‑M2/10‑91 (MQ=255)

                                                                                  acgcttttATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTAAATCAACGCgt          <  2:3772704‑M2/83‑1 (MQ=255)

                                                                                  acgcttttATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTAAATCAACGCgt          <  2:3772776‑M2/83‑1 (MQ=255)

                                                                                   cgcttttATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTAAATCAACGCgtg         >  2:1295006‑M2/8‑91 (MQ=255)

                                                                                     cttttATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTAAATCAACGCGTGtt       >  2:2257185‑M2/6‑91 (MQ=255)

                                                                                     cttttATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTAAATCAACGCGTGtt       >  1:899159‑M2/6‑91 (MQ=255)

                                                                                         tATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTAAATCAACGCGTGTTATTg   <  2:2792015‑M2/90‑1 (MQ=255)

                                                                                          ataCCTTAAATAATAAAAACACGCGCCAATATAAATCCAGTTAAATGTTCATCATGAACATGTGTGGTCTTAAATCAACGCGTGTTATTGt  <  1:1236387/91‑1 (MQ=255)

                                                                                          ataCCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTAAATCAACGCGTGTTATTGt  <  2:467436/91‑1 (MQ=255)

ATTACATGAACAACGATTTAAAAGAAAATCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTAAATCAACGCGTGTTATTGT  >  USA300TCH1516_ALE/1117251‑1117431

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.