BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1129293 =	184 (0.970)	13 (0.080)	10/144	NT	7.6%	intergenic (+71/‑256)	USA300HOU_RS05575/USA300HOU_RS05585	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	1129331 =	149 (0.870)	13 (0.080)	10/144	NT	7.6%	intergenic (+109/‑218)	USA300HOU_RS05575/USA300HOU_RS05585	hypothetical protein/hypothetical protein

Only 100 of 245 total aligned reads displayed.

ACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGAAAATCTTTA  >  USA300TCH1516_ALE/1129241‑1129420

tatgttttcaggttgaatttcattattaagattaaaatatgtataaaaaaatGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCa                                                                                           >  1:2327783‑M1/53‑91 (MQ=255)

aCTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCa                                                                                           >  1:2529419/1‑91 (MQ=255)

aCTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCa                                                                                           <  2:1436415/91‑1 (MQ=255)

 atgttttcaggttgaatttcattattaagattaaaatatgtataaaaaaatGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCAt                                                                                          >  1:272353‑M1/52‑91 (MQ=255)

  tAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCAtt                                                                                         >  2:590137/1‑91 (MQ=255)

   aaTCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCAttt                                                                                        <  2:1899811/91‑1 (MQ=255)

    ttttcaggttgaatttcattattaagattaaaatatgtataaaaaaatGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCAtttt                                                                                       >  2:1347935‑M1/49‑91 (MQ=255)

    ttttcaggttgaatttcattattaagattaaaatatgtataaaaaaatGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCAtttt                                                                                       >  2:1347934‑M1/49‑91 (MQ=255)

     tCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCAttttt                                                                                      <  1:3528541/91‑1 (MQ=255)

       tGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCAttttttt                                                                                    >  1:1094028/1‑91 (MQ=255)

        gATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTta                                                                                   <  2:113003/91‑1 (MQ=255)

        gATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTta                                                                                   >  1:377686/1‑91 (MQ=255)

        gATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTta                                                                                   <  2:2345115/91‑1 (MQ=255)

          tAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTtata                                                                                 >  1:470583/1‑91 (MQ=255)

           aaGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATAc                                                                                <  1:3321818/91‑1 (MQ=255)

            aGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGGTGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACa                                                                               <  1:3364623/91‑1 (MQ=255)

            aGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACa                                                                               <  1:2846658/91‑1 (MQ=255)

             ggCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACat                                                                              <  2:2237704/91‑1 (MQ=255)

              gCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACata                                                                             <  2:520800/91‑1 (MQ=255)

                aaTTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCAtttttt                                                                                     <  1:1259329/81‑1 (MQ=255)

                aaTTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCAtttttt                                                                                     >  2:1259329/1‑81 (MQ=255)

                aaTTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATAtt                                                                           <  1:667278/91‑1 (MQ=255)

                 tttcattattaagattaaaatatgtataaaaaaatGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATAttt                                                                          >  2:3182328‑M1/36‑91 (MQ=255)

                 aTTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATAttt                                                                          <  2:855467/91‑1 (MQ=255)

                 aTTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATAttt                                                                          <  1:78656/91‑1 (MQ=255)

                  tttGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATAtttt                                                                         >  1:735975/1‑91 (MQ=255)

                   ttGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTa                                                                        >  1:1815614/1‑91 (MQ=255)

                     gTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAAt                                                                      <  1:240535/91‑1 (MQ=255)

                      ttttATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATc                                                                     <  2:172989/91‑1 (MQ=255)

                      ttttATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATc                                                                     >  1:3840360/1‑91 (MQ=255)

                      ttattaagattaaaatatgtataaaaaaatggacagttaaggtatcaaatgaataccatcaactgtccATTTTTTTATACATATTTTAATc                                                                     >  2:2909465‑M2/69‑91 (MQ=255)

                       tttATGAGGTTTTTTGATGAAGTATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCt                                                                    <  2:3134754/91‑1 (MQ=255)

                       tttATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCt                                                                    >  2:609999/1‑91 (MQ=255)

                       tttATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCt                                                                    >  1:3501993/1‑91 (MQ=255)

                       tttATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCt                                                                    <  2:1971790/91‑1 (MQ=255)

                       tttATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCt                                                                    >  2:3784167/1‑91 (MQ=255)

                        ttATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCtt                                                                   >  1:1732217/1‑91 (MQ=255)

                        ttATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCtt                                                                   <  2:1409871/91‑1 (MQ=255)

                         ttaagattaaaatatgtataaaaaaatGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTta                                                                  >  1:2709954‑M1/28‑91 (MQ=255)

                          aTCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTtaa                                                                 <  1:1597547/91‑1 (MQ=255)

                           tCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTtaat                                                                >  2:3634793/1‑91 (MQ=255)

                              ggTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTTTTTTTATTTTAATCTTaataat                                                             >  2:422953/1‑91 (MQ=255)

                               gTTTTTTGATGAAGAATAGTCGGACATTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATg                                                            <  2:461436/91‑1 (MQ=255)

                               gTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATg                                                            >  1:3463196/1‑91 (MQ=255)

                               gTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATg                                                            >  2:3586242/1‑91 (MQ=255)

                                 tttttGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGaa                                                          <  2:1144575/91‑1 (MQ=255)

                                        tgaAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAAc                                                   <  2:755882/91‑1 (MQ=255)

                                        gtataaaaaaatggacagttaaggtatcaaatgaataccatcaactgtccATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAAc                                                   >  1:1580800‑M2/51‑91 (MQ=255)

                                          aagaaTAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCt                                                 <  1:3570551/91‑1 (MQ=255)

                                            gaaTAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACGGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGa                                               <  2:3408042/91‑1 (MQ=255)

                                               tAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGaaaa                                            <  2:3317121/91‑1 (MQ=255)

                                               tAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGaaaa                                            <  2:3317454/91‑1 (MQ=255)

                                                aGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAAc                                           >  1:3651538/1‑91 (MQ=255)

                                                  tCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACAt                                         <  1:2425111/91‑1 (MQ=255)

                                                   cGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATa                                        <  2:3131237/91‑1 (MQ=255)

                                                    GGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATaa                                       <  1:3732797‑M1/91‑1 (MQ=255)

                                                    GGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATaa                                       <  1:1504584‑M1/91‑1 (MQ=255)

                                                     GACAGTTGATGGTATTCATTTGATGCCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATaaa                                      >  2:98205‑M1/1‑91 (MQ=255)

                                                     GACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATaaa                                      >  1:3727573‑M1/1‑91 (MQ=255)

                                                     GACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATaaa                                      >  2:2862760‑M1/1‑91 (MQ=255)

                                                     GACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATaaa                                      >  1:3728807‑M1/1‑91 (MQ=255)

                                                      ACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAg                                     <  2:3283878‑M1/91‑1 (MQ=255)

                                                      ACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAg                                     >  2:1034258‑M1/1‑91 (MQ=255)

                                                      ACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAg                                     >  1:850507‑M1/1‑91 (MQ=255)

                                                      ACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAg                                     >  2:1968395‑M1/1‑91 (MQ=255)

                                                       CAGTTGATGGTATTCATTTGATACCTTAATTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGa                                    >  1:3115549‑M1/1‑91 (MQ=255)

                                                       CAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGa                                    >  1:1055758‑M1/1‑91 (MQ=255)

                                                        agttaaggtatcaaatgaataccatcaactgtccATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGAt                                   >  2:1224810‑M2/35‑91 (MQ=255)

                                                        AGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGAt                                   >  1:304227‑M1/1‑91 (MQ=255)

                                                          TTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAg                                 >  1:510072‑M1/1‑91 (MQ=255)

                                                             aTGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGtt                              >  1:3207941/1‑91 (MQ=255)

                                                             aTGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGtt                              >  2:303121/1‑91 (MQ=255)

                                                             aTGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGtt                              >  2:2368929/1‑91 (MQ=255)

                                                                gTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATg                           >  1:1620209/1‑91 (MQ=255)

                                                                   ttCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGata                        >  2:2222282/1‑91 (MQ=255)

                                                                   ttCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGata                        <  2:1163385/91‑1 (MQ=255)

                                                                        ttGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATagag                   <  1:1126232/91‑1 (MQ=255)

                                                                         tGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAgt                  >  2:3725486/1‑91 (MQ=255)

                                                                         tGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAgt                  >  1:1365763/1‑91 (MQ=255)

                                                                           aTACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAgtgt                >  1:1031634/1‑91 (MQ=255)

                                                                            tACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTa               >  1:688276/1‑91 (MQ=255)

                                                                            tACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTa               >  1:3412530/1‑91 (MQ=255)

                                                                             aCCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAg              <  2:1583213/91‑1 (MQ=255)

                                                                             aCCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAg              >  1:2432236/1‑91 (MQ=255)

                                                                              ccTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAgg             >  1:1872285/1‑91 (MQ=255)

                                                                               cTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAggg            >  2:2461710/1‑91 (MQ=255)

                                                                               cTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAggg            >  2:1656115/1‑91 (MQ=255)

                                                                               cTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAggg            <  1:1144090/91‑1 (MQ=255)

                                                                               cTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAggg            <  1:234014/91‑1 (MQ=255)

                                                                               cTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAggg            <  1:2511980/91‑1 (MQ=255)

                                                                               cTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAggg            <  2:2485505/91‑1 (MQ=255)

                                                                                ttAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGa           >  2:250240/1‑91 (MQ=255)

                                                                                   actgtccATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGaaaa        >  1:2176563‑M2/8‑91 (MQ=255)

                                                                                   actgtccATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGaaaa        >  1:1607796‑M2/8‑91 (MQ=255)

                                                                                   actgtccATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGaaaa        >  2:306464‑M2/8‑91 (MQ=255)

                                                                                   actgtccATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTAATGATATAGAGTGTAGGGaaaa        >  2:3122828‑M2/8‑91 (MQ=255)

                                                                                      gtccATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGAAAATCt     >  1:207366‑M2/5‑91 (MQ=255)

                                                                                        ccATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGAAAATCttt   >  2:179465‑M2/3‑91 (MQ=255)

                                                                                         cATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGAAAATCTTTa  >  1:1465061‑M2/2‑91 (MQ=255)

                                                                                         cATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGAAAATCTTTa  >  1:2778960‑M2/2‑91 (MQ=255)

ACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGAAAATCTTTA  >  USA300TCH1516_ALE/1129241‑1129420

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.