BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1182136 =	210 (1.100)	12 (0.070)	8/140	NT	6.6%	intergenic (‑154/‑209)	USA300TCH1516_01103/USA300HOU_RS05895	tRNA‑Arg/Antibacterial protein 3
*	?	USA300TCH1516_ALE	1182166 =	156 (0.940)	12 (0.070)	8/140	NT	6.6%	intergenic (‑184/‑179)	USA300TCH1516_01103/USA300HOU_RS05895	tRNA‑Arg/Antibacterial protein 3

Only 100 of 255 total aligned reads displayed.

CTATTTATCTAAAAAGGTTCAATAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAATTTATTTTAAAATAACAACAA  >  USA300TCH1516_ALE/1182076‑1182256

cTATTTATCTAAAAAGGTTCAATAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTAtttc                                                                                            <  1:1896228/91‑1 (MQ=255)

cTATTTATCTAAAAAGGTTCAATAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTAtttc                                                                                            <  2:163432/91‑1 (MQ=255)

 tagtttgtttatccgcacaacatcttataatgtacttaactgtattttaaagagaaaagAAATACAGTTTTGAATGCCTAACTGTAtttct                                                                                           >  1:2960744‑M1/60‑91 (MQ=255)

 tATTTATCTAAAAAGGTTCAATAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTAtttct                                                                                           <  2:2808675/91‑1 (MQ=255)

 tATTTATCTAAAAAGGTTCAATAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTAtttct                                                                                           >  2:1253285/1‑91 (MQ=255)

 tATTTATCTAAAAAGGTTCAATAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTAtttct                                                                                           >  1:3533109/1‑91 (MQ=255)

  aTTTATCTAAAAAGGTTCAATAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTAtttctt                                                                                          <  2:2309622/91‑1 (MQ=255)

     tATCTAAAAAGGTTCAATAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTAtttcttttc                                                                                       <  1:2348355/91‑1 (MQ=255)

     tATCTAAAAAGGTTCAATAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTAtttcttttc                                                                                       <  1:3679969/91‑1 (MQ=255)

     tATCTAAAAAGGTTCAATAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTAtttcttttc                                                                                       <  1:1601355/91‑1 (MQ=255)

       tCTAAAAAGGTTCAATAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTtctc                                                                                     >  2:3870929/1‑91 (MQ=255)

       tCTAAAAAGGTTCAATAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTtctc                                                                                     >  2:2466914/1‑91 (MQ=255)

       tCTAAAAAGGTTCAATAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATATCTTTtctc                                                                                     >  1:3711437/1‑91 (MQ=255)

          tatccgcacaacatcttataatgtacttaactgtattttaaagagaaaagaaatacagttttgaatgcctaactgtatttCTTTTCTCttt                                                                                  <  2:621549‑M2/11‑1 (MQ=255)

          aaaaaGGTTCAATAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCttt                                                                                  <  2:2855967/91‑1 (MQ=255)

            aaaGGTTCAATAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTaa                                                                                >  1:1808500/1‑91 (MQ=255)

              aGGTTCAATAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTaaaa                                                                              <  1:231918/91‑1 (MQ=255)

               ggTTCAATAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAAt                                                                             >  1:2297752/1‑91 (MQ=255)

                gTTCAATAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATa                                                                            <  2:3094619/91‑1 (MQ=255)

                  caacatcttatactgtacttaactgtattttaaagagaaaagaaatacagttaggcattcaaaactgtatttCTTTTCTCTTTAAAATACa                                                                          >  1:2990385‑M2/73‑91 (MQ=255)

                   cAATAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAg                                                                         <  1:3547609/91‑1 (MQ=255)

                    aaTAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGt                                                                        >  2:140676/1‑91 (MQ=255)

                    aaTAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGt                                                                        >  2:1694136/1‑91 (MQ=255)

                    aaTAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGt                                                                        <  2:1722367/91‑1 (MQ=255)

                    aaTAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGt                                                                        >  1:1013654/1‑91 (MQ=255)

                    aaTAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGt                                                                        >  1:1984694/1‑91 (MQ=255)

                    aaTAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGt                                                                        >  2:1315678/1‑91 (MQ=255)

                    aaTAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGCTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGt                                                                        >  1:699648/1‑91 (MQ=255)

                     aTAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGtt                                                                       <  2:2474230/91‑1 (MQ=255)

                         gACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGt                                                                   <  2:1897684/91‑1 (MQ=255)

                         gACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGt                                                                   <  1:2925139/91‑1 (MQ=255)

                         gACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGt                                                                   >  2:3437964/1‑91 (MQ=255)

                           cTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTAc                                                                 <  2:4598/91‑1 (MQ=255)

                             tAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACAt                                                               >  2:1193711/1‑91 (MQ=255)

                             tAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACAt                                                               <  1:1118267/91‑1 (MQ=255)

                              aaaTACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACAtt                                                              >  1:1176265/1‑91 (MQ=255)

                               aaTACGAATTCAGGCTACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTACTTTTCTCTTTAAAGTACAGTTAAGTACATta                                                             >  1:3316878/1‑91 (MQ=255)

                               aaTACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATta                                                             <  1:868023/91‑1 (MQ=255)

                               aaTACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATta                                                             >  2:3295250/1‑91 (MQ=255)

                               aaTACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATta                                                             >  2:2287995/1‑91 (MQ=255)

                                aTACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATtat                                                            >  2:2361563/1‑91 (MQ=255)

                                 tACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATtata                                                           >  2:2166818/1‑91 (MQ=255)

                                  aCGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATaa                                                          <  1:3349631/91‑1 (MQ=255)

                                   cGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAg                                                         <  1:1861261/91‑1 (MQ=255)

                                   cGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAg                                                         <  1:992945/91‑1 (MQ=255)

                                   cGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAg                                                         >  2:1874588/1‑91 (MQ=255)

                                   cGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACACTTAAGTACATTATAAg                                                         >  2:2981235/1‑91 (MQ=255)

                                    gAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGa                                                        <  2:2651547/91‑1 (MQ=255)

                                     aaTTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGAt                                                       >  2:380910/1‑91 (MQ=255)

                                     aaTTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGAt                                                       <  1:2811800/91‑1 (MQ=255)

                                       ttCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGAtgt                                                     >  2:148837/1‑91 (MQ=255)

                                       ttCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGAtgt                                                     >  1:3727024/1‑91 (MQ=255)

                                           ggCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTtgtg                                                 <  1:3144187/91‑1 (MQ=255)

                                           ggCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTtgtg                                                 <  1:116397/91‑1 (MQ=255)

                                             cAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCg                                               >  1:3002048/1‑91 (MQ=255)

                                              aaCTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCgg                                              <  1:3584744/91‑1 (MQ=255)

                                                cTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGAt                                            >  1:3630046/1‑91 (MQ=255)

                                                   aaTTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATaaa                                         >  1:2671460/1‑91 (MQ=255)

                                                   aaTTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATaaa                                         >  1:1426787/1‑91 (MQ=255)

                                                   aaTTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATaaa                                         >  1:1045245/1‑91 (MQ=255)

                                                    aTTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATaaac                                        <  2:902063/91‑1 (MQ=255)

                                                    aTTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATaaac                                        <  2:1543337/91‑1 (MQ=255)

                                                     ttGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATaaaca                                       >  2:1615333/1‑91 (MQ=255)

                                                     ttGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATaaaca                                       >  1:1976085/1‑91 (MQ=255)

                                                     ttGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATaaaca                                       >  1:329121/1‑91 (MQ=255)

                                                      gaaaagAAATACAGTTAGGCATTCAAAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATaaacaa                                      <  1:287066‑M1/85‑1 (MQ=255)

                                                       gtgtTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATaaacaaa                                     >  1:1970757/1‑91 (MQ=255)

                                                         gtTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACTGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACt                                   >  2:114295/1‑91 (MQ=255)

                                                          ttAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTa                                  >  1:48277/1‑91 (MQ=255)

                                                          ttAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTa                                  <  1:661570/91‑1 (MQ=255)

                                                            AAATACAGTTTTGAATGCCTGACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAAt                                <  2:1680568‑M1/91‑1 (MQ=255)

                                                            AAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAAt                                <  1:381699‑M1/91‑1 (MQ=255)

                                                            AAATACAGGTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAAt                                <  2:1755002‑M1/91‑1 (MQ=255)

                                                             aatacagttaggcattcaaaactgtatttCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAAtt                               >  2:588987‑M2/30‑91 (MQ=255)

                                                              atacagttaggcattcaaaactgtatttCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTg                              >  1:449219‑M2/29‑91 (MQ=255)

                                                              ATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTg                              <  1:136950‑M1/91‑1 (MQ=255)

                                                                 CAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTAt                           >  2:3737240‑M1/1‑91 (MQ=255)

                                                                   GTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCa                         >  1:2272675‑M1/1‑91 (MQ=255)

                                                                   GTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCa                         >  1:1407033‑M1/1‑91 (MQ=255)

                                                                    TTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCaa                        >  2:2873365‑M1/1‑91 (MQ=255)

                                                                      ttGAATGCCTAACTGTATTTCTTTTCTCTTTTAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAat                      >  2:3634810/1‑91 (MQ=255)

                                                                      ttGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAat                      >  1:3883495/1‑91 (MQ=255)

                                                                      ttGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAat                      <  2:181139/91‑1 (MQ=255)

                                                                      ttGAATGCCTAACTGTATTTCTTTTCTCTTGAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAACTGAATCAAat                      >  2:2722399/1‑91 (MQ=255)

                                                                         aaTGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAattta                   >  1:1718145/1‑91 (MQ=255)

                                                                         aaTGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAattta                   >  1:1259461/1‑91 (MQ=255)

                                                                           tGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAatttatt                 <  1:464283/91‑1 (MQ=255)

                                                                           tGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAatttatt                 <  2:2280784/91‑1 (MQ=255)

                                                                             ccTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAATTTAtttt               >  1:2009619/1‑91 (MQ=255)

                                                                              cTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAATTTATTTTa              <  1:3798545/91‑1 (MQ=255)

                                                                                aactgtatttCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAATTTATTTTaaa            >  1:1112758‑M2/11‑91 (MQ=255)

                                                                                  ctgtatttCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAATTTATTTTAAAAt          >  2:765950‑M2/9‑91 (MQ=255)

                                                                                  ctgtatttCTTTTCTCTTTAAAATACAGTAAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAATTTATTTTAAAAt          <  2:824457‑M2/83‑1 (MQ=255)

                                                                                   tgtatttCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAATTTATTTTAAAATa         >  2:2133424‑M2/8‑91 (MQ=255)

                                                                                      atttCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAATTTATTTTAAAATaaca      >  1:3238933‑M2/5‑91 (MQ=255)

                                                                                      atttCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAATTTATTTTAAAATaaca      <  2:2416864‑M2/87‑1 (MQ=255)

                                                                                        ttCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAATTTATTTTAAAATaacaac    <  1:2330341‑M2/89‑1 (MQ=255)

                                                                                          cttttctCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTATTTGTATCAAATTTATTTTAAAATaacaacaa  <  2:2960744/91‑1 (MQ=255)

                                                                                          cttttctCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAATTTATTTTAAAATaacaacaa  >  1:2536146/1‑91 (MQ=255)

                                                                                          cttttctCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAATTTATTTTAAAATaacaacaa  >  1:595017/1‑91 (MQ=255)

CTATTTATCTAAAAAGGTTCAATAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAATTTATTTTAAAATAACAACAA  >  USA300TCH1516_ALE/1182076‑1182256

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.