New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 1182690 =233 (1.220)18 (0.110) 10/136 NT 8.7% intergenic (+20/‑113) USA300HOU_RS05900/yfnB Antibacterial protein 3/Putative HAD‑hydrolase YfnB
?USA300TCH1516_ALE 1182741 = 179 (1.110)intergenic (+71/‑62) USA300HOU_RS05900/yfnB Antibacterial protein 3/Putative HAD‑hydrolase YfnB

Only 100 of 315 total aligned reads displayed.

GTAAATTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATATTTTGATAGACTT  >  USA300TCH1516_ALE/1182651‑1182831
                                                                                          |                                                                                          
gTAAATTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGtttattttat                                                                                            >  2:2357633/1‑91 (MQ=255)
 tgtatctaaatcttaacagaggctcaaatttctgcaaaTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTttattttatt                                                                                           >  2:279288‑M1/39‑91 (MQ=255)
   tatctaaatcttaacagaggctcaaatttctgcaaaTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTg                                                                                         >  2:1442606‑M1/37‑91 (MQ=255)
   aaTTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTg                                                                                         >  1:2771185/1‑91 (MQ=255)
    attattTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGc                                                                                        >  2:3444558/1‑91 (MQ=255)
     ttattTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCa                                                                                       <  2:454426/91‑1 (MQ=255)
      tattTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAg                                                                                      >  1:1964390/1‑91 (MQ=255)
         ttGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGaaa                                                                                   >  2:3819406/1‑91 (MQ=255)
             aTTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTg                                                                               >  1:1623870/1‑91 (MQ=255)
              ttCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTAAGTTTATTTTCTTTGCATAAATTTGa                                                                              >  2:3364413/1‑91 (MQ=255)
               aacagaggctcaaatttctgcaaaTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAg                                                                             >  1:2157891‑M1/25‑91 (MQ=255)
                cTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGc                                                                            <  2:2474737/91‑1 (MQ=255)
                  aatataataACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCct                                                                          <  1:3506245/91‑1 (MQ=255)
                    tataataACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAg                                                                                      >  2:526694/1‑77 (MQ=255)
                    tataataACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCctct                                                                        <  1:381601/91‑1 (MQ=255)
                     ataataACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTg                                                                       >  1:541523/1‑91 (MQ=255)
                     ataataACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTg                                                                       >  1:1440631/1‑91 (MQ=255)
                      taataaCTAATATTCTTTAAAATTAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGt                                                                      <  2:3033335/91‑1 (MQ=255)
                      taataaCTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGt                                                                      <  1:671509/91‑1 (MQ=255)
                       ctcaaatttctgcaaataaaataaactgagtgcataacattaaagtatgctcacccagtttattttaTTTGCAGAAATTTGAGCCTCTGtt                                                                     >  1:2158254‑M2/68‑91 (MQ=255)
                       aataaCTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGtt                                                                     >  2:2762584/1‑91 (MQ=255)
                       aataaCTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGtt                                                                     <  1:2431841/91‑1 (MQ=255)
                       aataaCTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGtt                                                                     <  1:469720/91‑1 (MQ=255)
                        ataaCTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTa                                                                    <  2:834192/91‑1 (MQ=255)
                        ataaCTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTa                                                                    <  2:1289635/91‑1 (MQ=255)
                          aaCTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAg                                                                  >  2:3162865/1‑91 (MQ=255)
                          aaCTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAg                                                                  >  1:860658/1‑91 (MQ=255)
                           aCTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGa                                                                 <  1:801637/91‑1 (MQ=255)
                            cTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGAt                                                                <  1:2214778/91‑1 (MQ=255)
                            cTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGAt                                                                <  2:194401/91‑1 (MQ=255)
                            cTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGAt                                                                <  2:2183331/91‑1 (MQ=255)
                            cTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATCTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGAt                                                                >  2:3192569/1‑91 (MQ=255)
                              aaTATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTaa                                                                   <  2:2600335/86‑1 (MQ=255)
                                tatTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAg                                                            >  1:2257379/1‑91 (MQ=255)
                                 tgcaaataaaataaactgagtgcataacattaaagtatgctcacccagtttattttaTTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGa                                                           >  2:766849‑M2/58‑91 (MQ=255)
                                 atTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCGTCTGTTAAGATTTAGa                                                           >  2:3718401/1‑91 (MQ=255)
                                  ttCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGAt                                                          <  2:408651/91‑1 (MQ=255)
                                   tCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATa                                                         >  1:2347923/1‑91 (MQ=255)
                                   caaataaaataaactgagtgcataacattaaagtatgctcacccagtttattttaTTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATa                                                         >  2:1443145‑M2/56‑91 (MQ=255)
                                    cTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATAc                                                        <  2:1231670/91‑1 (MQ=255)
                                     tttAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACa                                                       >  1:1879918/1‑91 (MQ=255)
                                     tttAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACa                                                       >  1:2665192/1‑91 (MQ=255)
                                     aataaaataaactgagtgcataacattaaagtatgctcacccagtttattttaTTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACa                                                       >  2:279358‑M2/54‑91 (MQ=255)
                                      ttAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACAt                                                      <  2:3310452/91‑1 (MQ=255)
                                      ttAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACAt                                                      <  2:642853/91‑1 (MQ=255)
                                        AAAATAAACTGGGTGAGCATACTTTCATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAg                                                    >  1:3599757‑M1/1‑91 (MQ=255)
                                         AAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGa                                                   <  2:1374134‑M1/91‑1 (MQ=255)
                                          AATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGAc                                                  <  1:3283377‑M1/91‑1 (MQ=255)
                                            taaaatgagtgcataacattaaagtatgctcacccagtttattttaTTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACaa                                                >  1:3067707‑M2/47‑91 (MQ=255)
                                            TAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACaa                                                <  2:907929‑M1/91‑1 (MQ=255)
                                              AACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAata                                              <  2:3656596‑M1/91‑1 (MQ=255)
                                              AACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAata                                              <  1:2705328‑M1/91‑1 (MQ=255)
                                              AACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAata                                              <  1:3012786‑M1/91‑1 (MQ=255)
                                              AACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAata                                              >  2:1995050‑M1/1‑91 (MQ=255)
                                               ACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAatat                                             >  2:2081266‑M1/1‑91 (MQ=255)
                                                 TGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAg                                           >  2:1438261‑M1/1‑91 (MQ=255)
                                                  GGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAgg                                          <  1:3872964‑M1/91‑1 (MQ=255)
                                                   ggTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATCGACAATATAGga                                         >  2:1544065/1‑91 (MQ=255)
                                                     tGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGgaga                                       >  1:3347317/1‑91 (MQ=255)
                                                     agtgcataacattaaagtatgcactcagtttattttaTTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGgaga                                       >  1:3567298‑M2/38‑91 (MQ=255)
                                                       aGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATg                                     <  1:3690229/91‑1 (MQ=255)
                                                       aGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATg                                     >  2:2576390/1‑91 (MQ=255)
                                                        gcgtACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATgg                                    <  2:2436092/88‑1 (MQ=255)
                                                        gCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATgg                                    >  2:862554/1‑91 (MQ=255)
                                                        gCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATgg                                    <  2:2308563/91‑1 (MQ=255)
                                                         cATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATggg                                   <  1:69555/91‑1 (MQ=255)
                                                         cATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATggg                                   >  2:1732609/1‑91 (MQ=255)
                                                         cATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATggg                                   <  1:1065400/91‑1 (MQ=255)
                                                            aCTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGaa                                >  2:2039558/1‑91 (MQ=255)
                                                             cTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGaaa                               <  2:3557985/91‑1 (MQ=255)
                                                               ttAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAAtt                             >  1:1027731/1‑91 (MQ=255)
                                                               ttAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAAtt                             >  1:1155109/1‑91 (MQ=255)
                                                                  aTGTTATTCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTggg                          <  1:1944524/91‑1 (MQ=255)
                                                                  aTGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTggg                          >  2:3471124/1‑91 (MQ=255)
                                                                  aTGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTggg                          >  2:3271552/1‑91 (MQ=255)
                                                                  aTGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTggg                          >  1:2918835/1‑91 (MQ=255)
                                                                    gTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGat                        >  2:1862643/1‑91 (MQ=255)
                                                                    gTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGat                        >  2:1165042/1‑91 (MQ=255)
                                                                     ttATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGata                       >  2:1581497/1‑91 (MQ=255)
                                                                       aTGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGAtata                     >  1:2603519/1‑91 (MQ=255)
                                                                         gCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATaaa                   >  2:1648656/1‑91 (MQ=255)
                                                                         gCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATaaa                   >  1:990381/1‑91 (MQ=255)
                                                                            cTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAat                >  2:1083996/1‑91 (MQ=255)
                                                                               agtttattttaTTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATAtt             <  1:3192569‑M2/80‑1 (MQ=255)
                                                                                gtttattttaTTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATAttt            >  1:3778240‑M2/11‑91 (MQ=255)
                                                                                 tttattttaTTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGAGGAAATTGGGATATAAAAATAtttt           >  2:2847428‑M2/10‑91 (MQ=255)
                                                                                  ttattttaTTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATATTTTg          >  1:656013‑M2/9‑91 (MQ=255)
                                                                                   tattttaTTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATATTTTGa         >  2:2557245‑M2/8‑91 (MQ=255)
                                                                                    attttaTTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATATTTTGAt        <  1:1761175‑M2/85‑1 (MQ=255)
                                                                                     ttttaTTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATATTTTGATa       <  1:2847566‑M2/86‑1 (MQ=255)
                                                                                     ttttaTTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATATTTTGATa       >  2:3253773‑M2/6‑91 (MQ=255)
                                                                                     ttttaTTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATATTTTGATa       <  1:2098777‑M2/86‑1 (MQ=255)
                                                                                     ttttaTTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATATTTTGATa       <  2:2664655‑M2/86‑1 (MQ=255)
                                                                                      tttaTTTGCAGAAATTTGGGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATATTTTGATAg      >  1:1488219‑M2/5‑91 (MQ=255)
                                                                                      tttaTTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATATTTTGATAg      <  2:1511350‑M2/87‑1 (MQ=255)
                                                                                      tttaTTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATATTTTGATAg      <  1:2382558‑M2/87‑1 (MQ=255)
                                                                                      tttaTTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATATTTTGATAg      >  1:601289‑M2/5‑91 (MQ=255)
                                                                                        taTTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATATTTTGATAGAc    <  1:2578768‑M2/89‑1 (MQ=255)
                                                                                         aTTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATATTTTGATAGACt   <  2:676680‑M2/90‑1 (MQ=255)
                                                                                         aTTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATATTTTGATAGACt   <  2:1694959‑M2/90‑1 (MQ=255)
                                                                                          |                                                                                          
GTAAATTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATATTTTGATAGACTT  >  USA300TCH1516_ALE/1182651‑1182831

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.