BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1265511	171 (0.900)	21 (0.140)	14/130	NT	12.3%	intergenic (+19/‑154)	femA_1/dprA	Aminoacyltransferase FemA/DNA processing protein DprA
*	?	USA300TCH1516_ALE	= 1265527	160 (1.040)	21 (0.140)	14/130	NT	12.3%	intergenic (+35/‑138)	femA_1/dprA	Aminoacyltransferase FemA/DNA processing protein DprA

Only 100 of 254 total aligned reads displayed.

TCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTAAAA  >  USA300TCH1516_ALE/1265437‑1265617

tcaAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTc                                                                                            >  2:2046811/1‑91 (MQ=255)

 cAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCt                                                                                           <  1:319880‑M2/91‑2 (MQ=255)

   aaCCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCttt                                                                                         <  1:1217833‑M2/91‑4 (MQ=255)

    aCCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttc                                                                                        <  1:2139977‑M2/91‑5 (MQ=255)

     ccAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttcc                                                                                       <  2:3129039‑M2/91‑6 (MQ=255)

       aGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttccaa                                                                                     >  1:2177731‑M2/1‑84 (MQ=255)

        gTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttccaac                                                                                    <  2:1908514‑M2/91‑9 (MQ=255)

        gTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttccaac                                                                                    <  2:3792419‑M2/91‑9 (MQ=255)

        gTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttccaac                                                                                    <  2:2045249‑M2/91‑9 (MQ=255)

         tAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttccaaca                                                                                   >  2:966027‑M2/1‑82 (MQ=255)

         tAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttccaaca                                                                                   >  1:414811‑M2/1‑82 (MQ=255)

          aaGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttccaacat                                                                                  <  1:118366‑M2/91‑11 (MQ=255)

             aCCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttccaacatact                                                                               >  2:275761‑M2/1‑78 (MQ=255)

               cAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttccaacatacttt                                                                             >  2:3441810‑M2/1‑76 (MQ=255)

               cAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttccaacatacttt                                                                             >  1:2234820‑M2/1‑76 (MQ=255)

                 aTTCTATATGAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTc                                                                           <  1:3708685/91‑1 (MQ=255)

                 aTTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTc                                                                           <  1:3129039/91‑1 (MQ=255)

                 aTTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTc                                                                           >  1:3857927/1‑91 (MQ=255)

                   tCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCAc                                                                         <  2:1995456/91‑1 (MQ=255)

                    cTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACt                                                                        >  1:1648126/1‑91 (MQ=255)

                    atatatataTTTGCAAATCTGATTTATAAGGTTTTATTATAAATTATGTTGGAAATTGAAATCTTAAATTCTTTCCAACATACTTTTCACt                                                                        >  2:3628249/2‑91 (MQ=255)

                     tatataAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACtt                                                                       <  1:2802064/91‑1 (MQ=255)

                      atataAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACttt                                                                      >  2:708148/1‑91 (MQ=255)

                      atataAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACttt                                                                      <  1:3036512/91‑1 (MQ=255)

                      atataAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACttt                                                                      >  2:2781915/1‑91 (MQ=255)

                        ataAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACttttt                                                                    >  2:1948633/1‑91 (MQ=255)

                        ataAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACttttt                                                                    >  1:3394078/1‑91 (MQ=255)

                          aaaTTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTaa                                                                  >  2:1221145/1‑91 (MQ=255)

                          aaaTTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTaa                                                                  >  1:3155528/1‑91 (MQ=255)

                          aaaTTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACACACTTTTCACTTTTTaa                                                                  >  2:3704365/1‑91 (MQ=255)

                           aaTTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAg                                                                 >  2:1298441/1‑91 (MQ=255)

                              ttGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCa                                                              <  1:2126758/91‑1 (MQ=255)

                              ttGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCa                                                              >  2:1547057/1‑91 (MQ=255)

                                gCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGACATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGt                                                            <  2:3412648/91‑1 (MQ=255)

                                gCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGt                                                            <  2:570206/91‑1 (MQ=255)

                                 cAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTa                                                           >  1:3237068/1‑91 (MQ=255)

                                   aaaCTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTAtt                                                         >  1:3636358/1‑91 (MQ=255)

                                   aaaCTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTAtt                                                         >  1:3876352/1‑91 (MQ=255)

                                     aCTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTAtttt                                                       >  2:1020719/1‑91 (MQ=255)

                                      cTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTAttttt                                                      <  1:182852/91‑1 (MQ=255)

                                           ttatAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTcc                                                 <  1:2255060/91‑1 (MQ=255)

                                           ttatAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTcc                                                 <  2:672455/91‑1 (MQ=255)

                                             ataAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCtt                                               <  2:2892227/91‑1 (MQ=255)

                                                aGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTaaa                                            >  2:3244362/1‑91 (MQ=255)

                                                    ttAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATaa                                        <  2:1515531/91‑1 (MQ=255)

                                                     tAATTATAAAGTATTTTTGATAGTGAAATTTTGAATTCTTTCCAACATACTTTTCACTTTGGAATTCAGTATTGTTACTCCTTAAAATAAc                                       <  2:3500745/91‑1 (MQ=255)

                                                     tAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAAc                                       >  1:1863052/1‑91 (MQ=255)

                                                     tAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAAc                                       <  2:3537724/91‑1 (MQ=255)

                                                      aaTTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACa                                      >  1:2669392/1‑91 (MQ=255)

                                                      aaTTATAAAGTATGTTGGAAACTGAAATTTTAAATTCTTTCCAACATACTTTTCCCTTTTTAAGTCAGTATTCTTACTCCTTAAAATAACa                                      <  2:2524633/91‑1 (MQ=255)

                                                       aTTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACAt                                     <  1:2983718/91‑1 (MQ=255)

                                                        ttATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttccaacatactttataattaaaccttataaataagttttgcaaatctatataga                                    <  2:263677‑M2/91‑57 (MQ=255)

                                                          ataAAGTATGTTGGAAATTGAAATTTTAAATTCtttccaacatactttataattaaaccttataaataagttttgcaaatttatatagaat                                  <  1:1514740‑M2/91‑59 (MQ=255)

                                                          ataAAGTATGTTGGAAATTGAAATTTTAAATTCtttccaacatactttataattaaaccttataaataagttttgcaaatttatatagaat                                  <  2:891806‑M2/91‑59 (MQ=255)

                                                          ataAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTAc                                  >  2:862332/1‑91 (MQ=255)

                                                          ataAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTAc                                  >  1:1059325/1‑91 (MQ=255)

                                                           taAAGTATGTTGGAACTTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCTGTATTTTTACTCCTTAAAATAACATTACa                                 <  2:3373801/91‑1 (MQ=255)

                                                           taAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACa                                 <  1:881107/91‑1 (MQ=255)

                                                            aaaGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACAt                                >  1:2480465/1‑91 (MQ=255)

                                                            aaaGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACAt                                >  2:709896/1‑91 (MQ=255)

                                                              aGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCg                              <  1:708148/91‑1 (MQ=255)

                                                              aGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCg                              <  1:2123309/91‑1 (MQ=255)

                                                               gTATGTTGGAAATTGAAATTTTAAATTCtttccaacatactttataattaaaccttataaataagttttgcaaatttatatagaattggtc                             <  2:1964362‑M2/91‑64 (MQ=255)

                                                               gTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGa                             >  1:3491985/1‑91 (MQ=255)

                                                               gTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACAGACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGa                             >  1:3282887/1‑91 (MQ=255)

                                                                tATGTTGGGAATTTAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGAc                            <  2:2419650/91‑1 (MQ=255)

                                                                tATGTTGGAAATTGAAATTTTAAATTCtttccaacatactttataattaaaccttataaataagttttgcaaatttatatagaattggtct                            <  1:2610296‑M2/91‑65 (MQ=255)

                                                                tATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGAc                            <  2:1412509/91‑1 (MQ=255)

                                                                tATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGAc                            <  2:2669392/91‑1 (MQ=255)

                                                                tATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGAc                            >  1:2048741/1‑91 (MQ=255)

                                                                tATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGAc                            <  2:391291/91‑1 (MQ=255)

                                                                tATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGAc                            <  2:745315/91‑1 (MQ=255)

                                                                tATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTAATCCTTAAAATAACATTACCTCGAc                            >  2:2327005/1‑91 (MQ=255)

                                                                 aTGTTGGAAATTGAAATTTTAAATTCtttccaacatactttataattaaaccttataaataagttttgcaaatttatatagaattggtctt                           <  2:1348914‑M2/91‑66 (MQ=255)

                                                                 aTGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACa                           >  2:2135943/1‑91 (MQ=255)

                                                                 aTGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACa                           <  1:1305904/91‑1 (MQ=255)

                                                                  tGTTGGAAATTGAAATTTTAAATTCtttccaacatactttataattaaaccttataaataagttttgcaaatttatatagaattggtctta                          <  1:2398500‑M2/91‑67 (MQ=255)

                                                                  tGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACaa                          >  2:3198891/1‑91 (MQ=255)

                                                                   gTTGGAAATTGAAATTTTAAATTCtttccaacatactttataattaaaccttataaataagttttgcaaatttatatagaattggtcttac                         <  2:2587079‑M2/91‑68 (MQ=255)

                                                                   gTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAAt                         <  2:2705280/91‑1 (MQ=255)

                                                                   gTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAAt                         >  1:103224/1‑91 (MQ=255)

                                                                    ttGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATg                        <  1:1140092/91‑1 (MQ=255)

                                                                    ttGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATg                        <  2:3308704/91‑1 (MQ=255)

                                                                    ttGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATg                        >  1:2489918/1‑91 (MQ=255)

                                                                    ttGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATg                        <  1:3045437/91‑1 (MQ=255)

                                                                      ggAAATTGAAATTTTAAATTCtttccaacatactttataattaaaccttataaataagttttgcaaatttatatagaattggtcttactgg                      <  2:1495908‑M2/91‑71 (MQ=255)

                                                                      ggAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGtt                      >  1:555519/1‑91 (MQ=255)

                                                                      ggAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGtt                      >  1:1560736/1‑91 (MQ=255)

                                                                      ggAAATTGAAATTTTAAATTCTTGCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGtt                      <  1:455273/91‑1 (MQ=255)

                                                                       gaaattgaaattTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGttt                     >  1:2335836/1‑91 (MQ=255)

                                                                          attgaaattTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTg                  >  1:1493533/1‑91 (MQ=255)

                                                                           ttgaaattTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGt                 <  2:2263877/91‑1 (MQ=255)

                                                                           ttgaaattTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGt                 >  2:1562600/1‑91 (MQ=255)

                                                                             gaaattTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTAt               <  2:503289/91‑1 (MQ=255)

                                                                               aattTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTa             >  2:1578404/1‑91 (MQ=255)

                                                                                attTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAg            >  1:802743/1‑91 (MQ=255)

                                                                                  tttAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGaa          <  2:427372/91‑1 (MQ=255)

                                                                                      aaTTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGt      <  1:298573/91‑1 (MQ=255)

                                                                                       aTTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTa     >  2:1141289/1‑91 (MQ=255)

                                                                                        ttCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTaa    <  2:3162626/91‑1 (MQ=255)

TCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTAAAA  >  USA300TCH1516_ALE/1265437‑1265617

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.