BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1353894 =	166 (0.870)	12 (0.080)	8/134	NT	8.2%	intergenic (+87/+56)	nucH/USA300HOU_RS06735	Thermonuclease/hypothetical protein
*	?	USA300TCH1516_ALE	1353946 =	131 (0.820)	12 (0.080)	8/134	NT	8.2%	intergenic (+139/+4)	nucH/USA300HOU_RS06735	Thermonuclease/hypothetical protein

Only 100 of 245 total aligned reads displayed.

ATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCTTCGCTAATAATACGTC  >  USA300TCH1516_ALE/1353856‑1354035

aTTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTg                                                                                           >  1:2113590/1‑91 (MQ=255)

 tttATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGa                                                                                          >  2:1808147/1‑91 (MQ=255)

 tttATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGa                                                                                          >  1:1265291/1‑91 (MQ=255)

 tttATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGa                                                                                          >  2:2079780/1‑91 (MQ=255)

  ttattattaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGAt                                                                                         >  1:1003011/1‑91 (MQ=255)

  ttattattaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGAt                                                                                         >  2:2088966/1‑91 (MQ=255)

   tattattaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGAtt                                                                                        <  1:3727621/91‑1 (MQ=255)

    attattaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGAttt                                                                                       >  2:186695/1‑91 (MQ=255)

    attattaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGAttt                                                                                       >  1:3141138/1‑91 (MQ=255)

     ttattaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGAtttt                                                                                      <  2:2116473/91‑1 (MQ=255)

      tattaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTa                                                                                     <  2:3193561/91‑1 (MQ=255)

        ttaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACt                                                                                   <  1:1520329/91‑1 (MQ=255)

        ttaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACt                                                                                   >  2:683579/1‑91 (MQ=255)

          aCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTg                                                                                 >  2:2191581/1‑91 (MQ=255)

           ccATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGa                                                                                <  1:2990925/91‑1 (MQ=255)

            cATAAATTTATATATAGACATAAATTAAAGGCATAAGATCCATAGTGCGTATCGAGCGTAATGGTTTATTAGGCCTTTGATTTTACTTGag                                                                               <  2:3672536/91‑2 (MQ=255)

            cATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGaa                                                                               <  2:3676738/91‑1 (MQ=255)

            cATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGaa                                                                               <  2:2363522/91‑1 (MQ=255)

              tAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAata                                                                             >  2:2643468/1‑91 (MQ=255)

              tAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAata                                                                             >  2:2879402/1‑91 (MQ=255)

                aaTTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAAtata                                                                           <  2:449652/91‑1 (MQ=255)

                aaTTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAAtata                                                                           <  2:1969456/91‑1 (MQ=255)

                 agttATATATAGAAATAAGTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAg                                                                          <  2:2587483/89‑1 (MQ=255)

                 aTTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAg                                                                          >  1:1553631/1‑91 (MQ=255)

                   ttATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCt                                                                        <  2:480120/91‑1 (MQ=255)

                    tatatataGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCtg                                                                       >  1:2878082/1‑91 (MQ=255)

                      tatataGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCtgtg                                                                     >  2:123507/1‑91 (MQ=255)

                       atataGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGa                                                                    >  1:243731/1‑91 (MQ=255)

                        tataGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGAt                                                                   <  2:262216/91‑1 (MQ=255)

                               ataatTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCa                                                            <  1:3232902/91‑1 (MQ=255)

                               ataatTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTCATTTGATCa                                                            <  1:1954663/91‑1 (MQ=255)

                                taatTTAAAGGCATAATAACCATAGTGCGTATCTAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCaa                                                           <  1:3183514/91‑1 (MQ=255)

                                taatTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCaa                                                           <  2:1586232/91‑1 (MQ=255)

                                  atTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAAcc                                                         <  2:2264503/91‑1 (MQ=255)

                                  atTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAAcc                                                         >  2:3100458/1‑91 (MQ=255)

                                    ttAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTg                                                       >  1:2345588/1‑91 (MQ=255)

                                      AAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGtt                                                     <  2:3013576‑M1/91‑1 (MQ=255)

                                      AAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGtt                                                     <  2:1425734‑M1/91‑1 (MQ=255)

                                      AAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGtt                                                     <  1:3461767‑M1/91‑1 (MQ=255)

                                       aaggcataataatccattacgctcgatacgcactatggttattatgcctttGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTc                                                    >  1:1135453‑M2/52‑91 (MQ=255)

                                        AGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCt                                                   >  2:1007876‑M1/1‑91 (MQ=255)

                                        AGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCt                                                   >  2:2563534‑M1/1‑91 (MQ=255)

                                         GGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCtt                                                  <  1:2087919‑M1/91‑1 (MQ=255)

                                          GCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCttt                                                 <  2:325029‑M1/91‑1 (MQ=255)

                                          GCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCttt                                                 >  2:3826651‑M1/1‑91 (MQ=255)

                                            ATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCtttat                                               >  1:2591696‑M1/1‑91 (MQ=255)

                                            ATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCtttat                                               >  2:243731‑M1/1‑91 (MQ=255)

                                             taataatccattacgctcgatacgcactatggttattatgcctttGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCtttatt                                              >  1:23927‑M2/46‑91 (MQ=255)

                                             TAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCtttatt                                              >  1:413627‑M1/1‑91 (MQ=255)

                                             TAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCtttatt                                              <  1:514798‑M1/91‑1 (MQ=255)

                                              aataatccattacgctcgatacgcactatggttattatgcctttGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCtttattt                                             >  1:66197‑M2/45‑91 (MQ=255)

                                               ataatccattacgctcgatacgcactatggttattatgcctttGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGATCtttattta                                            >  2:3299885‑M2/44‑91 (MQ=255)

                                               ATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCtttattta                                            <  2:3621756‑M1/91‑1 (MQ=255)

                                               ATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCtttattta                                            <  1:3760545‑M1/91‑1 (MQ=255)

                                               ATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCtttattta                                            >  1:2643468‑M1/1‑91 (MQ=255)

                                                taatccattacgctcgatacgcactatggttattatgcctttGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTaa                                           >  1:942750‑M2/43‑91 (MQ=255)

                                                TAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTaa                                           >  2:3469591‑M1/1‑91 (MQ=255)

                                                TAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTaa                                           >  2:3452873‑M1/1‑91 (MQ=255)

                                                TAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTaa                                           >  2:3066857‑M1/1‑91 (MQ=255)

                                                TAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTaa                                           <  1:2761742‑M1/91‑1 (MQ=255)

                                                  ACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAg                                         <  2:2132902‑M1/91‑1 (MQ=255)

                                                   tccattacgctcgatacgcactatggttattatgcctttGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAgg                                        >  2:3339500‑M2/40‑91 (MQ=255)

                                                   ccATAGTGCGTATCGAGCGTAATGGATTATTATCCCTCTGATTTTACTTGAATATAGCTCTGATTTGATCAACCTGTTCTTTATTTAAAgg                                        >  1:3100472/1‑91 (MQ=255)

                                                    cATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAggg                                       >  1:309123/1‑91 (MQ=255)

                                                    cATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAggg                                       <  1:1485716/91‑1 (MQ=255)

                                                     aTAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTc                                                    >  2:2009153/1‑77 (MQ=255)

                                                     aTAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTc                                                    <  1:2009153/77‑1 (MQ=255)

                                                       aGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGgtgt                                    <  1:2127958/91‑1 (MQ=255)

                                                       aGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTC‑TTATTTAAAGGGTGtt                                   >  1:1421990/1‑91 (MQ=255)

                                                        tacgctcgatacgcactatggttattatgcctttGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGtt                                   >  1:22265‑M2/35‑91 (MQ=255)

                                                        gTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGtt                                   >  1:3588990/1‑91 (MQ=255)

                                                         tGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGttt                                  >  1:1308462/1‑91 (MQ=255)

                                                           cGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAg                                >  2:1656325/1‑91 (MQ=255)

                                                           cGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTCAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTACAGGGTGTTTAg                                >  2:2957055/1‑91 (MQ=255)

                                                            gTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGa                               <  2:240696/91‑1 (MQ=255)

                                                                cGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGc                           <  1:1059472/91‑1 (MQ=255)

                                                                  aGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGctc                         <  2:3779674/91‑1 (MQ=255)

                                                                  aGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGctc                         <  1:2958851/91‑1 (MQ=255)

                                                                   gCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGctct                        >  1:2478998/1‑91 (MQ=255)

                                                                   gCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGctct                        >  1:1222666/1‑91 (MQ=255)

                                                                   gCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGctct                        <  1:3402447/91‑1 (MQ=255)

                                                                    cGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTa                       >  1:3169676/1‑91 (MQ=255)

                                                                    cGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTa                       <  1:3328683/91‑1 (MQ=255)

                                                                     gTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTAt                      <  1:1988221/91‑1 (MQ=255)

                                                                      tAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCCATg                     >  1:3122287/1‑91 (MQ=255)

                                                                       aaTGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATgg                    <  2:1478574/91‑1 (MQ=255)

                                                                        aTGGATTTTTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGGTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGc                   <  2:865547/91‑1 (MQ=255)

                                                                        aTGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGc                   >  2:1826097/1‑91 (MQ=255)

                                                                         tGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCt                  <  1:1034681/91‑1 (MQ=255)

                                                                          ggATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCTACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCtt                 >  1:3868859/1‑91 (MQ=255)

                                                                           gATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCTTc                >  1:1782979/1‑91 (MQ=255)

                                                                           gATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCTTc                <  1:1635233/91‑1 (MQ=255)

                                                                            attattATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCTTCg               <  2:1098757/91‑1 (MQ=255)

                                                                             ttattatgcctttGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGCTGTTTAGATAGCTCTATGGCTTCGc              >  1:3603239‑M2/14‑91 (MQ=255)

                                                                                ttatgcctttGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCTTCGCtaa           >  2:1100096‑M2/11‑91 (MQ=255)

                                                                                ttatgcctttGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCTTCGCtaa           >  2:921497‑M2/11‑91 (MQ=255)

                                                                                   tgcctttGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCTTCGCtaataa        >  2:670496‑M2/8‑91 (MQ=255)

                                                                                    gcctttGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCTTCGCTaataat       <  1:889120‑M2/85‑1 (MQ=255)

                                                                                     cctttGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCTTCGCTAataata      <  2:1283597‑M2/86‑1 (MQ=255)

                                                                                         tGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCTTCGCTAATAATACGTc  >  1:1590376‑M2/2‑91 (MQ=255)

ATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCTTCGCTAATAATACGTC  >  USA300TCH1516_ALE/1353856‑1354035

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.