BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1392266 =	136 (0.710)	19 (0.110)	9/140	NT	12.9%	intergenic (+40/‑460)	alsT/glcT	Amino‑acid carrier protein AlsT/GlcA/glcB genes antiterminator
*	?	USA300TCH1516_ALE	1392308 =	137 (0.820)	19 (0.110)	9/140	NT	12.9%	intergenic (+82/‑418)	alsT/glcT	Amino‑acid carrier protein AlsT/GlcA/glcB genes antiterminator

Only 100 of 244 total aligned reads displayed.

GATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTGAGATTTATTTCC  >  USA300TCH1516_ALE/1392218‑1392398

ttagattaactagtgtaatgatacagatgataattgagtacaaatttaAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGtttt                                                                                            >  2:2434222‑M1/49‑91 (MQ=255)

 tagattaactagtgtaatgatacagatgataattgagtacaaatttaAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTa                                                                                           >  2:2816150‑M1/48‑91 (MQ=255)

  agattaactagtgtaatgatacagatgataattgagtacaaatttaaaaccctgagattttcgctttaatttgaaaacctcagggtttTaa                                                                                          >  2:2064008‑M2/89‑91 (MQ=255)

  agattaactagtgtaatgatacagatgataattgagtacaaatttaaaaccctgagattttcgctttaatttgaaaacctcagggtttTaa                                                                                          >  2:2064002‑M2/89‑91 (MQ=255)

     ataaataTTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAAtt                                                                                       >  2:1743479/1‑91 (MQ=255)

      taaataTTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAAttt                                                                                      >  2:1467133/1‑91 (MQ=255)

      taaataTTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAAttt                                                                                      <  2:2177575/91‑1 (MQ=255)

      taaataTTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAAttt                                                                                      >  2:2453753/1‑91 (MQ=255)

      taaataTTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAAttt                                                                                      >  1:1646902/1‑91 (MQ=255)

      taaataTTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAAttt                                                                                      >  1:2649870/1‑91 (MQ=255)

        aataTTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGt                                                                                    >  1:3570200/1‑91 (MQ=255)

         atatTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTa                                                                                   <  1:3115398/91‑1 (MQ=255)

         atatTTTTAATGTAACGATTCATTATATAAAAAGCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTa                                                                                   <  1:2954687/91‑1 (MQ=255)

          tatTTTTAATGTAACGTTTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTGAAGCGAAAATCTCAGGGATTTAAATTTGTAc                                                                                  <  2:3545072/91‑1 (MQ=255)

          tatTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTAc                                                                                  >  1:416444/1‑91 (MQ=255)

          tatTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTAc                                                                                  <  1:2746491/91‑1 (MQ=255)

          tatTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTAc                                                                                  <  2:2390246/91‑1 (MQ=255)

           atTTTTAATGTAACGATTCATTATATAAAGATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACt                                                                                 <  1:3110079/91‑1 (MQ=255)

            tttttAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTc                                                                                >  1:2423134/1‑91 (MQ=255)

             ttttAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCa                                                                               >  2:1094919/1‑91 (MQ=255)

              tttAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCaa                                                                              >  1:2643075/1‑91 (MQ=255)

              tttAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCaa                                                                              >  2:542801/1‑91 (MQ=255)

                tAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAAtt                                                                            <  1:1751292/91‑1 (MQ=255)

                tAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAAtt                                                                            >  2:283425/1‑91 (MQ=255)

                 aaTGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTa                                                                           >  1:1160410/1‑91 (MQ=255)

                   tGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTatc                                                                         <  1:1678131/91‑1 (MQ=255)

                   tGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTatc                                                                         >  1:155337/1‑91 (MQ=255)

                    gTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTatca                                                                        <  1:831528/91‑1 (MQ=255)

                     tAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTatcat                                                                       <  1:989365/91‑1 (MQ=255)

                      aaCGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTatcatc                                                                      >  1:3818683/1‑91 (MQ=255)

                        cGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTg                                                                    <  2:3650305/91‑1 (MQ=255)

                         gATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGt                                                                   <  1:3232430/91‑1 (MQ=255)

                           ttCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTAt                                                                 <  2:2591659/91‑1 (MQ=255)

                             cATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCGATTATCATCTGTATCa                                                               <  1:1498483/91‑1 (MQ=255)

                             cATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCa                                                               >  2:788039/1‑91 (MQ=255)

                             cATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCa                                                               >  2:921690/1‑91 (MQ=255)

                              aTTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCAt                                                              >  1:2912186/1‑91 (MQ=255)

                              aTTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCAt                                                              >  2:2430898/1‑91 (MQ=255)

                               ttATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCAtt                                                             >  1:3475294/1‑91 (MQ=255)

                                tatataAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTa                                                            >  2:1555491/1‑91 (MQ=255)

                                 atataAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTac                                                           <  2:2169302/91‑1 (MQ=255)

                                  tataAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTaca                                                          <  1:2195270/91‑1 (MQ=255)

                                    taAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACt                                                        >  1:1538610/1‑91 (MQ=255)

                                      aaaaTCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAg                                                      <  2:3107335/91‑1 (MQ=255)

                                       aaaTCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGt                                                     >  2:1695492/1‑91 (MQ=255)

                                         aTCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAACTCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTa                                                   >  1:3258696/1‑91 (MQ=255)

                                         aTCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTa                                                   <  1:2156310/91‑1 (MQ=255)

                                           cAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAAt                                                 <  1:1070006/91‑1 (MQ=255)

                                            aaaTAAACCCTGAGGTTTTCAAATTAAAGCGAAAATGTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATc                                                <  2:3831793/91‑1 (MQ=255)

                                            aaaTAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATc                                                >  1:2693257/1‑91 (MQ=255)

                                             aaTAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCt                                               <  1:2620440/91‑1 (MQ=255)

                                              taaaaccctgagattttcgctttaatttgaaaacctcagggtttTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTa                                              >  2:1794681‑M2/45‑91 (MQ=255)

                                              taaaaccctgagattttcgctttaatttgaaaacctcagggtttTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTa                                              >  1:1911442‑M2/45‑91 (MQ=255)

                                               tAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTaa                                             >  2:85116/1‑91 (MQ=255)

                                               tAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATCATCATCTGTATCATTACACTAGTTAATCTaa                                             >  1:2070070/1‑91 (MQ=255)

                                                AAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAg                                            >  2:3408739‑M1/1‑91 (MQ=255)

                                                AAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAg                                            >  2:1061985‑M1/1‑91 (MQ=255)

                                                 AACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGa                                           >  2:3716895‑M1/1‑91 (MQ=255)

                                                  accctgagattttcgctttaatttgaaaacctcagggtttTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGAt                                          >  1:217227‑M2/41‑91 (MQ=255)

                                                   CCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGAtt                                         >  1:1424564‑M1/1‑91 (MQ=255)

                                                    cctgagattttcgctttaatttgaaaacctcagggtttTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGAttt                                        >  2:3393814‑M2/39‑91 (MQ=255)

                                                     tcagGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTg                                       <  1:1024363‑M1/87‑1 (MQ=255)

                                                     ctgagattttcgctttaatttgaaaacctcagggtttTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTg                                       >  1:122746‑M2/38‑91 (MQ=255)

                                                     ctgagattttcgctttaatttgaaaacctcagggtttTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTg                                       >  1:509558‑M2/38‑91 (MQ=255)

                                                     CTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTg                                       <  2:722777‑M1/91‑1 (MQ=255)

                                                     CTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTg                                       <  1:2825490‑M1/91‑1 (MQ=255)

                                                       gagattttcgctttaatttgaaaacctcagggtttTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGAt                                     >  1:2337114‑M2/36‑91 (MQ=255)

                                                         GGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTa                                   <  1:2975207‑M1/91‑1 (MQ=255)

                                                         GGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTa                                   >  1:1999403‑M1/1‑91 (MQ=255)

                                                         GGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTa                                   >  2:2643075‑M1/1‑91 (MQ=255)

                                                          gTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATtat                                  >  2:60927/1‑91 (MQ=255)

                                                             ttCAAATTAAAGCGAAAATCTCAGGGCTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGACTTGATtatata                               >  1:577231/1‑91 (MQ=255)

                                                              tCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTatatat                              >  1:658993/1‑91 (MQ=255)

                                                               cAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATAtt                             >  2:293397/1‑91 (MQ=255)

                                                                 aaTTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAAGTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTaa                           >  2:3197060/1‑91 (MQ=255)

                                                                  aTTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAat                          <  2:881852/91‑1 (MQ=255)

                                                                    tAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAatat                        <  2:3770626/91‑1 (MQ=255)

                                                                     aaaGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAAtata                       <  1:1094919/91‑1 (MQ=255)

                                                                      aaGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAg                      <  1:1819016/91‑1 (MQ=255)

                                                                       aGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGt                     >  1:3314010/1‑91 (MQ=255)

                                                                       aGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGt                     >  2:5051/1‑91 (MQ=255)

                                                                          gAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAg                  <  2:2686358/91‑1 (MQ=255)

                                                                           aaaaTCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAgg                 <  2:2230544/91‑1 (MQ=255)

                                                                              aTCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTg              >  2:1332792/1‑91 (MQ=255)

                                                                              aTCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTg              <  1:3860485/91‑1 (MQ=255)

                                                                                ctcagggtttTAAATTTGTACTCAATTATCATCTGTGTCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTgag            <  2:410375‑M2/81‑1 (MQ=255)

                                                                                ctcagggtttTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTgag            <  2:2337114‑M2/81‑1 (MQ=255)

                                                                                 tcagggtttTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTgaga           <  2:3028359‑M2/82‑1 (MQ=255)

                                                                                 tcagggtttTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTgaga           <  1:2047421‑M2/82‑1 (MQ=255)

                                                                                  cagggtttTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTGAGat          >  1:2892942‑M2/9‑91 (MQ=255)

                                                                                  cagggtttTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTGAGat          <  1:1393144‑M2/83‑1 (MQ=255)

                                                                                   agggtttTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTGAGatt         >  2:2402609‑M2/8‑91 (MQ=255)

                                                                                      gtttTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTGAGatttat      <  1:2476070‑M2/87‑1 (MQ=255)

                                                                                        ttTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTGAGatttattt    <  2:1988284‑M2/89‑1 (MQ=255)

                                                                                        ttTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTGAGatttattt    <  2:2961910‑M2/89‑1 (MQ=255)

                                                                                        ttTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTGAGatttattt    >  1:900185‑M2/3‑91 (MQ=255)

                                                                                        ttTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTGAGatttattt    >  1:2557076‑M2/3‑91 (MQ=255)

                                                                                         tTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTGAGATTTATTTc   >  2:1357430‑M2/2‑91 (MQ=255)

                                                                                         tTAAATTTGTACCCAATTATCATCTGCATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTGAgaattactta   >  2:1908473‑M2/2‑90 (MQ=255)

                                                                                          tAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTGAGATTTATTtcc  >  2:3288721/1‑91 (MQ=255)

GATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTGAGATTTATTTCC  >  USA300TCH1516_ALE/1392218‑1392398

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.