BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1404075 =	167 (0.880)	18 (0.100)	13/148	NT	11.2%	intergenic (+213/‑279)	ysdC_1/trpE	Putative aminopeptidase YsdC/Anthranilate synthase component 1
*	?	USA300TCH1516_ALE	1404118 =	132 (0.750)	18 (0.100)	13/148	NT	11.2%	intergenic (+256/‑236)	ysdC_1/trpE	Putative aminopeptidase YsdC/Anthranilate synthase component 1

Only 100 of 214 total aligned reads displayed.

ATTGAATGAGTTTTGAAAGTGAACATGAATTATGTTAACTAAGGTGGCACCACGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGAAAGTTAGTGGATGATGTGAACTAACACCGAGATTAATGAAATT  >  USA300TCH1516_ALE/1404028‑1404208

aTTGAATGAGTTTTGAAAGTGAACATGAATTATGTTAACTAAGGTGGCACCACGGTAACGCGTCCTTACAGGTATATGCGTTATGTGgtgt                                                                                            <  2:440918/91‑1 (MQ=255)

 ttGAATGAGTTTTGAAAGTGAACATGAATTATGTTAACTAAGGTGGCACCACGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTc                                                                                           <  1:2911337/91‑1 (MQ=255)

 ttGAATGAGTTTTGAAAGTGAACATGAATTATGTTAACTAAGGTGGCACCACGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTc                                                                                           <  1:786958/91‑1 (MQ=255)

  tGAATGAGTTTTGAAAGTGAACATGAATTATGTTAACTAAGGTGGCACCACGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCt                                                                                          >  2:1203060/1‑91 (MQ=255)

   gAATGAGTTTTGAAAGTGAACATGAATTATGTTAACTAAGGTGGCACCACGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCtt                                                                                         >  2:643462/1‑91 (MQ=255)

   gAATGAGTTTTGAAAGTGAACATGAATTATGTTAACTAAGGTGGCACCACGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCtt                                                                                         <  1:3545312/91‑1 (MQ=255)

    tgctacctttaattaactactacattttgtctaaataaaaagaCACCACGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCttt                                                                                        >  2:188221‑M1/44‑91 (MQ=255)

    aaTGAGTTTTGAAAGTGAACATGAATTATGTTAACTAAGGTGGCACCACGGTAACGCGTCCTTACGGGTATATGCGTTATGTGGTGTCttt                                                                                        >  1:3020203/1‑91 (MQ=255)

    aaTGAGTTTTGAAAGTGAACATGAATTATGTTAACTAAGGTGGCACCACGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCttt                                                                                        <  1:1872724/91‑1 (MQ=255)

     aTGAGTTTTGAAAGTGAACATGAATTATGTTAACTAAGGTGGCACCACGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCtttt                                                                                       >  1:1266514/1‑91 (MQ=255)

      tGAGTTTTGAAAGTGAACATGAATTATGTTAACTAAGGTGGCACCACGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCttttt                                                                                      <  1:284094/91‑1 (MQ=255)

        aGTTTTGAAAGTGAACATGAATTATGTTAACTAAGGTGGCACCACGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCTTtttat                                                                                    >  2:3696414/1‑91 (MQ=255)

         gTTTTGAAAGTGAACATGAATTATGTTAACTAAGGTGGCACCACGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCTTtttatt                                                                                   >  2:3021522/1‑91 (MQ=255)

          ttttGAAAGTGAACATGAATTATGTTAACTAAGGTGGCACCACGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCTTtttattt                                                                                  >  1:18157/1‑91 (MQ=255)

           tttGAAAGTGAACATGAATTATGTTAACTAAGGTGGCACCACGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCTTtttattta                                                                                 >  1:2141902/1‑91 (MQ=255)

            ttGAAAGTGAACATGAATTATGTTAACTAAGGTGGCACCACGGTAACGCCTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAg                                                                                <  1:3364978/91‑1 (MQ=255)

             tGAAAGTGAACATGAATTATGTTAACTAAGGTGGCACCACGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGa                                                                               <  2:1818467/91‑1 (MQ=255)

             tGAAAGTGAACATGAATTATGTTAACTAAGGTGGCACCACGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGa                                                                               <  1:1265196/91‑1 (MQ=255)

              gAAAGTGAACATGAATTATGTTAACTAAGGTGGCACCACGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGAc                                                                              >  2:1665144/1‑91 (MQ=255)

              gAAAGTGAACATGAATTATGTTAACTAAGGTGGCACCACGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGAc                                                                              >  1:1136997/1‑91 (MQ=255)

                aaGTGAACATGAATTATGTTAACTAAGGTGGCACCACGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACaa                                                                            <  1:45416/91‑1 (MQ=255)

                  gTGAACATGAATTATGTTAACTAAGGTGGCACCACGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACaaaa                                                                          >  1:823429/1‑91 (MQ=255)

                       cATGAATTATGTTAACTAAGGTGGCACCACGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACAAAATgtag                                                                     >  1:655133/1‑91 (MQ=255)

                          gAATTATGTTAACTAAGGTGGCACCACGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGtagtag                                                                  <  1:3336331/91‑1 (MQ=255)

                           aaTTATGTTAACTAAGGTGGCACCACGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTagtagt                                                                 <  1:1293859/91‑1 (MQ=255)

                            aTTATGTTAACTAAGGTGGCACCACGGTAACGCGTCCTTACAGGTATGTGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGtt                                                                <  1:349148/91‑1 (MQ=255)

                            aTTATGTTAACTAAGGTGGCACCACGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGtt                                                                <  1:297142/91‑1 (MQ=255)

                              tATGTTAACTAAGGTGGCACCACGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGttaa                                                              <  2:2121794/91‑1 (MQ=255)

                              tATGTTAACTAAGGTGGCACCACGGTAACGCGTCCTTACAGGTACATGCGTCATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGttat                                                              >  1:405817/1‑90 (MQ=255)

                                tGTTAACTAAGGTGGCACCACGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGttaatt                                                            <  2:1444483/91‑1 (MQ=255)

                                tGTTAACTAAGGTGGCACAACGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACATAATGTAGTAGttgatt                                                            >  2:1120338/1‑91 (MQ=255)

                                 gTTAACTAAGGTGGCACCACGGTAACGCGTCCTTACAGGTATATGCGTCATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGttaatta                                                           >  2:747167/1‑91 (MQ=255)

                                  ttAACTAAGGTGGCACCACGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTCGttaattaa                                                          <  1:1945663/91‑1 (MQ=255)

                                   tAACTAAGGTGGCACCACGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGTTAATTaaa                                                         >  1:2357262/1‑91 (MQ=255)

                                   tAACTAAGGTGGCACCACGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGTTAATTaaa                                                         >  2:3514322/1‑91 (MQ=255)

                                      cTAAGGTGGCACCACGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGt                                                      >  1:1360717/1‑91 (MQ=255)

                                         aGGTGGCACCACGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGc                                                   >  1:2603716/1‑91 (MQ=255)

                                         aGGTGGCACCACGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGc                                                   <  1:2476603/91‑1 (MQ=255)

                                         aGGTGGCACCACGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGc                                                   >  1:2160739/1‑91 (MQ=255)

                                           aagacaccacataacgcatatacctgtaaggacgcgttaccgtggtgTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCaa                                                 >  1:958010‑M2/48‑91 (MQ=255)

                                           aagacaccacataacgcatatacctgtaaggacgcgttaccgtggtgTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCaa                                                 >  1:957967‑M2/48‑91 (MQ=255)

                                            tGGCACCACGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAAc                                                >  1:3418183/1‑91 (MQ=255)

                                            tGGCACCACGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAAc                                                <  1:1010762/91‑1 (MQ=255)

                                            agacaccacataacgcatatacctgtaaggacgcgttaccgtggtgTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAAc                                                >  1:3034511‑M2/47‑91 (MQ=255)

                                             ggCACCACGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACa                                               >  2:3274820/1‑91 (MQ=255)

                                             ggCACCACGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACa                                               <  2:1736256/91‑1 (MQ=255)

                                              gCACCACGGTAACGCGTCCTTACTTGTATATGCGTTATGTGGTGTCTTTTTATTAAGACAAAATGTAGTAGTTAATTAAAGGTTGCAACAg                                              <  2:3614221/91‑1 (MQ=255)

                                              gCACCACGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAg                                              >  2:551906/1‑91 (MQ=255)

                                              gCACCACGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAg                                              <  2:516999/91‑1 (MQ=255)

                                               caccacataacgcatatacctgtaaggacgcgttaccgtggtgTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGa                                             >  2:2110501‑M2/44‑91 (MQ=255)

                                               CACCACGGTAACGCGTGCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGa                                             >  2:2973132‑M1/1‑91 (MQ=255)

                                               CACCACGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGa                                             >  2:2174284‑M1/1‑91 (MQ=255)

                                                 ccacataacgcatatacctgtaaggacgcgttaccgtggtgTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGaaa                                           >  1:3830459‑M2/42‑91 (MQ=255)

                                                  CACGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGAAAg                                          >  1:140117‑M1/1‑91 (MQ=255)

                                                  CACGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGAAAg                                          >  1:2626662‑M1/1‑91 (MQ=255)

                                                   ACGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGAAAGt                                         >  1:573141‑M1/1‑91 (MQ=255)

                                                    CGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGACAGtt                                        <  2:1922665‑M1/91‑1 (MQ=255)

                                                    CGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGAAAGtt                                        >  2:224873‑M1/1‑91 (MQ=255)

                                                    CGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGAAAGtt                                        <  2:800048‑M1/91‑1 (MQ=255)

                                                    CGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGAAAGtt                                        <  1:224873‑M1/91‑1 (MQ=255)

                                                    CGGTAACGCGTCCTTACAGGTATATGCGTTATGTG‑TGTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGAAAGTTa                                       <  2:675307‑M1/91‑1 (MQ=255)

                                                      gTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGAAAGTTAg                                      <  1:742837/91‑1 (MQ=255)

                                                       tAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGAAAGTTAGt                                     >  2:148632/1‑91 (MQ=255)

                                                       tAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGAAAGTTAGt                                     <  2:1601657/91‑1 (MQ=255)

                                                       tAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGAAAGTTAGt                                     <  2:1975709/91‑1 (MQ=255)

                                                       tAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGAAAGTTAGt                                     <  2:3467183/91‑1 (MQ=255)

                                                         acgcatatacctgtaaggacgcgttatgtggtgTCTTTTTATTTAGTCAAACTGTAGTAGTAAATTAAAGGTAGCAACAGAAAGTTAGTgg                                   >  2:405769‑M2/34‑91 (MQ=255)

                                                         aCGCGTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGAAAGTTAGTgg                                   <  1:1514091/91‑1 (MQ=255)

                                                         aCGCGTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGAAAGTTAGTgg                                   >  1:2582197/1‑91 (MQ=255)

                                                          cgcgTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGTTGATTAAAGGTAGCAACAGAAAGTTAGTGga                                  >  1:3112489/1‑91 (MQ=255)

                                                          cgcgTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGAAAGTTAGTGga                                  >  1:1717143/1‑91 (MQ=255)

                                                          cgcgTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGAAAGTTAGTGga                                  <  2:67690/91‑1 (MQ=255)

                                                          cgcgTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGAAAGTTAGTGga                                  <  1:1326039/91‑1 (MQ=255)

                                                           gcatatacctgtaaggacgcgttatgtggtgTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGAAAGTTAGTGgat                                 >  1:854062‑M2/32‑91 (MQ=255)

                                                             atatacctgtaaggacgcgttatgtggtgTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGAAAGTTAGTGgatga                               >  2:3748040‑M2/30‑91 (MQ=255)

                                                                cTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGAAAGTTAGTGGATGAtgt                            >  1:1165895/1‑91 (MQ=255)

                                                                  tACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGAAAGTTAGTGGATGATGTGa                          <  1:2189442/91‑1 (MQ=255)

                                                                  tACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGAAAGTTAGTGGATGATGTGa                          <  2:3583794/91‑1 (MQ=255)

                                                                    cAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGAAAGTTAGTGGATGATGTGAAc                        <  2:2631121/91‑1 (MQ=255)

                                                                    cAGGTACATGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGAAAGTTAGTGGATGATGTGAAc                        >  1:3021749/1‑91 (MQ=255)

                                                                        tataTGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGAAAGTTAGTGGATGATGTGAACTAac                    >  1:2347095/1‑91 (MQ=255)

                                                                           atGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGAAAGTTAGTGGATGATGTGAACTAACAcc                 <  2:2529229/91‑1 (MQ=255)

                                                                            tGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGAAAGTTAGTGGATGATGTGAACTAACACCg                >  2:1782794/1‑91 (MQ=255)

                                                                              cGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGAAAGTTAGTGGATGATGTGAACTAACACCgag              <  1:1566702/91‑1 (MQ=255)

                                                                               gTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGAAAGTTAGTGGATGATGTGAACTAACACCgaga             >  1:1986416/1‑91 (MQ=255)

                                                                                ttATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGAAAGTTAGTGGATGATGTGAACTAACACCGAGAt            >  1:526616/1‑91 (MQ=255)

                                                                                ttATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGAAAGTTAGTGGATGATGTGAACTAACACCGAGAt            >  1:1539101/1‑91 (MQ=255)

                                                                                 tATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGAAAGTTAGTGGATGATGTGAACTAACACCGAGAtt           <  1:313128/91‑1 (MQ=255)

                                                                                    gtggtgTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGAAAGTTAGTGGATGATGTGAACTAACACCGAGATTAAt        >  1:1999842‑M2/7‑91 (MQ=255)

                                                                                    gtggtgTCTGTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGAAAGTTAGTGGATGATGTGAACTAACACCGAGATTAAt        <  1:3706896‑M2/85‑1 (MQ=255)

                                                                                     tggtgTCTTTTTATTTAGACAAGATGTAGTAGTTAATTAAAGGTAGCAAGAGAAAGTTAGTGGATGATGTGAACTAACACCGAGATTAATg       <  2:2953310‑M2/86‑1 (MQ=255)

                                                                                     tggtgTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGAAAGTTAGTGGATGATGTGAACTAACACCGAGATTAATg       <  2:2375754‑M2/86‑1 (MQ=255)

                                                                                      ggtgTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGAAAGTTAGTGGATGATGTGAACTAACACCGAGATTAATGa      >  2:3423390‑M2/5‑91 (MQ=255)

                                                                                      ggtgTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGAAAGTTAGTGGATGATGTGAACTAACACCGAGATTAATGa      <  2:2727480‑M2/87‑1 (MQ=255)

                                                                                      ggtgTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGAAAGTTAGTGGATGATGTGAACTAACACCGAGATTAATGa      >  1:3668916‑M2/5‑91 (MQ=255)

                                                                                      ggtgTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGAAAGTTAGTGGATGATGCGAACTAACACCGAGATTAATGa      >  2:3130898‑M2/5‑91 (MQ=255)

                                                                                        tgTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGAAAGTTAGTGGATGATGTGAACTAACACCGAGATTAATGaaa    <  2:220136‑M2/89‑1 (MQ=255)

                                                                                         gTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGAAAGTTAGTGGATGATGTGAACTAACACCGAGATTAATGAAAt   >  1:2797733‑M2/2‑91 (MQ=255)

                                                                                          tCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGAAAGTTAGTGGATGATGTGAACTAACACCGAGATTAATGAAAtt  <  1:1782794/91‑1 (MQ=255)

                                                                                          tCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGAAAGTTAGTGGATGATGTGAACTAACACCGAGATTAATGAAAtt  <  2:1104861/91‑1 (MQ=255)

ATTGAATGAGTTTTGAAAGTGAACATGAATTATGTTAACTAAGGTGGCACCACGGTAACGCGTCCTTACAGGTATATGCGTTATGTGGTGTCTTTTTATTTAGACAAAATGTAGTAGTTAATTAAAGGTAGCAACAGAAAGTTAGTGGATGATGTGAACTAACACCGAGATTAATGAAATT  >  USA300TCH1516_ALE/1404028‑1404208

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.