BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1671778 =	208 (1.090)	19 (0.110)	10/146	NT	9.5%	intergenic (‑23/+108)	trmK/sigA	tRNA (adenine(22)‑N(1))‑methyltransferase/RNA polymerase sigma factor SigA
*	?	USA300TCH1516_ALE	1671809 =	171 (0.980)	19 (0.110)	10/146	NT	9.5%	intergenic (‑54/+77)	trmK/sigA	tRNA (adenine(22)‑N(1))‑methyltransferase/RNA polymerase sigma factor SigA

Only 100 of 260 total aligned reads displayed.

GACTTACCGTCGTTAATCGGTTATTTAACGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGATATAAATTAATCCATAAAGT  >  USA300TCH1516_ALE/1671719‑1671899

gACTTACCGTCGTTAATCGGTTATTTAACGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACctca                                                                                            >  1:3050589/1‑91 (MQ=255)

 aCTTACCGTCGTTAATCGGTTATTTAACGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACctcac                                                                                           >  2:1902853/1‑91 (MQ=255)

  cTTACCGTCGTTAATCGGTTATTTAACGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACctcact                                                                                          >  2:2542744/1‑91 (MQ=255)

   ttACCGTCGTTAATCGGTTATTTAACGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACctcactc                                                                                         <  1:3855145/91‑1 (MQ=255)

   ttACCGTCGTTAATCGGTTATTTAACGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACctcactc                                                                                         <  1:2917532/91‑1 (MQ=255)

    tACCGTCGTTAATCGGTTATTTAACGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACctcactca                                                                                        <  1:766233/91‑1 (MQ=255)

    tACCGTCGTTAATCGGTTATTTAACGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACctcactca                                                                                        <  1:2012893/91‑1 (MQ=255)

       cgtcgtTAATCGGTTATTTAACGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGt                                                                                     <  1:928462/91‑1 (MQ=255)

          cgtTAATCGGTTATTTAACGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTaa                                                                                  <  2:1266442/91‑1 (MQ=255)

           gtTAATCGGTTATTTAACGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTaaa                                                                                 <  2:775668/91‑1 (MQ=255)

            ttAATCGGTTATTTAACGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAAt                                                                                >  2:875863/1‑91 (MQ=255)

               aTCAGTTATTTAACGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATcat                                                                             <  2:2621605/91‑3 (MQ=255)

                 cGGTTATTTAACGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTaa                                                                           <  1:3391398/91‑1 (MQ=255)

                  ggTTATTTAACGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAACTCTTAAt                                                                          >  2:3450446/1‑91 (MQ=255)

                    ttATTTAACGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCt                                                                        >  2:3650155/1‑91 (MQ=255)

                       tttAACGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTaaa                                                                     >  2:3316115/1‑91 (MQ=255)

                        ttAACGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTaaaa                                                                    >  2:1595331/1‑91 (MQ=255)

                           aCGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCGATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAaaata                                                                 >  2:3405815/1‑91 (MQ=255)

                           aCGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAaaata                                                                 <  1:1614229/91‑1 (MQ=255)

                           aCGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAaaata                                                                 >  2:2172936/1‑91 (MQ=255)

                           aCGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAaaata                                                                 >  2:3748593/1‑91 (MQ=255)

                           aCGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAaaata                                                                 <  1:2008296/91‑1 (MQ=255)

                           aCGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAaaata                                                                 <  2:1812887/91‑1 (MQ=255)

                             gAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAaaataaa                                                               <  1:1834288/91‑1 (MQ=255)

                             gAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAaaataaa                                                               <  2:2695391/91‑1 (MQ=255)

                               aaTCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAaataaata                                                             >  2:1327324/1‑91 (MQ=255)

                               aaTCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAaataaata                                                             <  1:3486108/91‑1 (MQ=255)

                               aaTCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAaataaata                                                             <  1:2435653/91‑1 (MQ=255)

                                aTCATTTTATTCTCCTTTATGAAATAAGAGGTTGAACATTATTCAATGTAGCAACCTCACTCAAGTTAAATCTTAATCTAAAAataaataa                                                            <  2:3599165/91‑1 (MQ=255)

                                aTCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAataaataa                                                            <  2:3582371/91‑1 (MQ=255)

                                aTCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAataaataa                                                            >  2:1434818/1‑91 (MQ=255)

                                 tCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAg                                                           <  2:2949740/91‑1 (MQ=255)

                                 tCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAg                                                           >  1:1377714/1‑91 (MQ=255)

                                   aTTTTATTCACATTTAAGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAgcg                                                         <  2:1441487/91‑1 (MQ=255)

                                    ttttATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAgcgc                                                        >  2:28918/1‑91 (MQ=255)

                                     tttATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCt                                                       >  2:911525/1‑91 (MQ=255)

                                      ttATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCtt                                                      >  1:400961/1‑91 (MQ=255)

                                       tattatCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAAAATCACTAAAGTTAAATATTAATATAAAAATAAATAAGCGCTTa                                                     >  2:361123/1‑91 (MQ=255)

                                       tATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTa                                                     <  1:652162/91‑1 (MQ=255)

                                         ttCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAATTAAGCGCTTAtt                                                   <  1:2981140/91‑1 (MQ=255)

                                         ttCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTAtt                                                   >  2:3553527/1‑91 (MQ=255)

                                         ttCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTAtt                                                   <  1:3643208/91‑1 (MQ=255)

                                         ttCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTAtt                                                   <  1:2341243/91‑1 (MQ=255)

                                          tctcCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTc                                                  >  2:644802/1‑91 (MQ=255)

                                          tctcCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTc                                                  <  2:3110472/91‑1 (MQ=255)

                                           ctcCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCa                                                 <  1:3577001/91‑1 (MQ=255)

                                            tcCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCAt                                                <  2:1928682/91‑1 (MQ=255)

                                             ccTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATg                                               <  2:2413820/91‑1 (MQ=255)

                                              cTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGt                                              <  1:1680776/91‑1 (MQ=255)

                                               tttATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTc                                             <  1:184503/91‑1 (MQ=255)

                                               tttATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTc                                             <  2:2139473/91‑1 (MQ=255)

                                                    gAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGt                                        >  1:2949704/1‑91 (MQ=255)

                                                     aaaaaaGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTa                                       >  2:3202387/1‑91 (MQ=255)

                                                     aaaaaaGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTa                                       >  2:3743773/1‑91 (MQ=255)

                                                     aaaaaaGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTa                                       >  1:755915/1‑91 (MQ=255)

                                                     aaaaaaGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGACTTGGTa                                       >  2:2224453/1‑91 (MQ=255)

                                                      aaaaaGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTat                                      <  2:2318197/91‑1 (MQ=255)

                                                       aaaaGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTatc                                     >  1:1742737/1‑91 (MQ=255)

                                                       aaaaGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTatc                                     >  1:1039839/1‑91 (MQ=255)

                                                       aaaaGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTatc                                     >  1:1497646/1‑91 (MQ=255)

                                                       aaaaGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCATGGTatc                                     >  1:1931391/1‑91 (MQ=255)

                                                        agtgaggttggtacattgaataatgttcaacctcACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTatca                                    >  1:419962‑M2/35‑91 (MQ=255)

                                                          agagGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTatcaat                                  <  2:402699/91‑1 (MQ=255)

                                                          agagGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTatcaat                                  >  1:456857/1‑91 (MQ=255)

                                                            AGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTatcaatca                                >  1:484143‑M1/1‑91 (MQ=255)

                                                             ggttggtacattgaataatgttcaacctcACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCAt                               >  1:3534799‑M2/30‑91 (MQ=255)

                                                             GGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCAt                               <  2:3035953‑M1/91‑1 (MQ=255)

                                                             GGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCAt                               >  1:2893350‑M1/1‑91 (MQ=255)

                                                             GGTTGAACATTATACAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCAt                               >  2:1696460‑M1/1‑91 (MQ=255)

                                                              gtttgtacattgaataatgttcaacctcACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCAtt                              >  2:593861‑M2/29‑91 (MQ=255)

                                                              GTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCAtt                              <  1:3750641‑M1/91‑1 (MQ=255)

                                                                tggtacattgaataatgttcaacctcACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTaa                            >  2:121671‑M2/27‑91 (MQ=255)

                                                                tggtacattgaataatgttcaacctcACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTaa                            >  2:2842966‑M2/27‑91 (MQ=255)

                                                                 ggtacattgaataatgttcaacctcACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTaaa                           >  1:1098811‑M2/26‑91 (MQ=255)

                                                                  aaCATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTaaaa                          <  1:3246726/91‑1 (MQ=255)

                                                                     cattgaataatgttcaacctcACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTg                       >  2:2639910‑M2/22‑91 (MQ=255)

                                                                     attattCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAGTAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTg                       >  1:3080681/1‑91 (MQ=255)

                                                                      ttattCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATCAAAATTGa                      >  2:3373163/1‑91 (MQ=255)

                                                                       tattCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGat                     >  2:3671934/1‑91 (MQ=255)

                                                                        attCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGata                    <  2:2731599/91‑1 (MQ=255)

                                                                         ttCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGatat                   >  2:2097913/1‑91 (MQ=255)

                                                                          tCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGAtata                  >  1:2546186/1‑91 (MQ=255)

                                                                           cAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGATATaa                 >  1:2875488/1‑91 (MQ=255)

                                                                             aTGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGATATAAAt               >  1:589010/1‑91 (MQ=255)

                                                                             aTGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGATATAAAt               <  1:2197543/91‑1 (MQ=255)

                                                                               gTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGATATAAATTa             >  1:657374/1‑91 (MQ=255)

                                                                               gTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGATATAAATTa             >  1:2911802/1‑91 (MQ=255)

                                                                                tACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGATATAAATTaa            <  1:2389395/91‑1 (MQ=255)

                                                                                  ccAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGATATAAATTAATc          >  1:2088074/1‑91 (MQ=255)

                                                                                  ccAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGATATAAATTAATc          <  1:2574915/91‑1 (MQ=255)

                                                                                    aacctcACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGATATAAATTAATCCa        >  2:1067475‑M2/7‑91 (MQ=255)

                                                                                    aacctcACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGATATAAATTAATCCa        >  2:3701332‑M2/7‑91 (MQ=255)

                                                                                     acctcACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGATATAAATTAATCCAt       >  2:1000544‑M2/6‑91 (MQ=255)

                                                                                     acctcACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGATATAAATTAATCCAt       >  1:3600957‑M2/6‑91 (MQ=255)

                                                                                     acctcACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGATATAAATTAATCCAt       <  1:211049‑M2/86‑1 (MQ=255)

                                                                                     acctcACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGATATAAATTAATCCAt       >  2:3692353‑M2/6‑91 (MQ=255)

                                                                                        tcACTCAAGTTAAATCTTAATCTAAAAATACATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGATATAAATTAATCCATaaa    >  2:1153672‑M2/3‑91 (MQ=255)

                                                                                         cACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGATATAAATTAATCCATAAAg   <  2:2271054‑M2/90‑1 (MQ=255)

                                                                                          actcaAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGATATAAATTAATCCATAAAGt  >  1:3153407/1‑91 (MQ=255)

                                                                                          actcaAATTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGATATAAATTAATCCATAGAGt  >  1:3012506/1‑91 (MQ=255)

GACTTACCGTCGTTAATCGGTTATTTAACGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGATATAAATTAATCCATAAAGT  >  USA300TCH1516_ALE/1671719‑1671899

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.