BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1682514 =	141 (0.740)	25 (0.150)	13/140	NT	16.9%	intergenic (‑259/+45)	USA300HOU_RS08380/USA300HOU_RS08385	PhoH‑like protein/hypothetical protein
*	?	USA300TCH1516_ALE	1682550 =	122 (0.730)	25 (0.150)	13/140	NT	16.9%	intergenic (‑295/+9)	USA300HOU_RS08380/USA300HOU_RS08385	PhoH‑like protein/hypothetical protein

Only 100 of 230 total aligned reads displayed.

TAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGAACGCTGA  >  USA300TCH1516_ALE/1682460‑1682639

tAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTc                                                                                           <  1:2676946/91‑1 (MQ=255)

tAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTACTTAAAGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTc                                                                                           <  2:3828141/91‑1 (MQ=255)

 aaCTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCa                                                                                          <  2:3358483/91‑1 (MQ=255)

  tatgatatggtcagaaattttagctaaaccaaaacaattataaaattttttgAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCaa                                                                                         >  1:2602230‑M1/53‑91 (MQ=255)

  aCTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCaa                                                                                         >  2:1898684/1‑91 (MQ=255)

  aCTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCaa                                                                                         >  1:913521/1‑91 (MQ=255)

   cTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCaaa                                                                                        <  1:2501199/91‑1 (MQ=255)

     aaTATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCaaaaa                                                                                      >  2:3541072/1‑91 (MQ=255)

       tatTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAAt                                                                                    <  1:1773016/91‑1 (MQ=255)

       tatTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAAt                                                                                    >  2:2304712/1‑91 (MQ=255)

       tatTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAAt                                                                                    >  2:2304474/1‑91 (MQ=255)

          ttCTCGAAAAATTCTCCTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAAtttt                                                                                 <  2:2973732/91‑1 (MQ=255)

            ctcGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTtat                                                                               >  1:2045064/1‑91 (MQ=255)

             tcGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTtata                                                                              <  2:2743801/91‑1 (MQ=255)

             cagaaattttagctaaaccaaaacaattataaaattttttgAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTtata                                                                              >  1:1454078‑M1/42‑91 (MQ=255)

              cGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATaa                                                                             <  1:3781282/91‑1 (MQ=255)

               gAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAAt                                                                            <  1:3246427/91‑1 (MQ=255)

               gAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAAt                                                                            <  2:428900/91‑1 (MQ=255)

               gAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAAt                                                                            <  2:1398518/91‑1 (MQ=255)

                aaaaaTTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAAtt                                                                           <  2:1248579/91‑1 (MQ=255)

                 aaaaTTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTg                                                                          <  1:384045/91‑1 (MQ=255)

                  aaaTTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGt                                                                         <  1:1504522/91‑1 (MQ=255)

                   aaTTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGtt                                                                        <  2:25619/91‑1 (MQ=255)

                      tctcTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTg                                                                     >  1:243787/1‑91 (MQ=255)

                      tctcTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTg                                                                     >  2:666565/1‑91 (MQ=255)

                        tctTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGt                                                                   >  2:1172450/1‑91 (MQ=255)

                        tctTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGt                                                                   <  1:99768/91‑1 (MQ=255)

                         ctTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGtt                                                                  >  2:1978503/1‑91 (MQ=255)

                          tttGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGttt                                                                 <  1:2708837/91‑1 (MQ=255)

                          tttGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGttt                                                                 >  2:193882/1‑91 (MQ=255)

                            tGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAg                                                               <  2:1306923/91‑1 (MQ=255)

                              ttttttAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCt                                                             >  2:2085821/1‑91 (MQ=255)

                              ttttttAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCt                                                             <  2:519353/91‑1 (MQ=255)

                              ttttttAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCAAAATAAAAAAAAATTTTATAATTGTTTTGGTTTAGCt                                                             <  2:1724083/91‑1 (MQ=255)

                                ttttAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTaa                                                           <  1:1886146/91‑1 (MQ=255)

                                 tttAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTaaa                                                          <  2:753868/91‑1 (MQ=255)

                                 aaacaattataaaattttttgaaaacaagcactatcgtaatggtagttgcttgttttCAAAAAATTTTATAATTGTTTTGGTTTAGCTaaa                                                          >  1:1727301‑M2/58‑91 (MQ=255)

                                      tttttCTTAACGTCAAAAAACAAGCAACTACCATTACGATAGTACTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTc                                                     <  1:3876836/91‑1 (MQ=255)

                                        tttCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTg                                                   <  1:102018/91‑1 (MQ=255)

                                         ttCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGa                                                  >  1:1366048/1‑91 (MQ=255)

                                            ttAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCa                                               <  1:3397729/91‑1 (MQ=255)

                                              tataaaattttttgaaaacaagcactatcgatagtgcttgttttCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCata                                             >  1:3474124‑M2/45‑91 (MQ=255)

                                              tataaaattttttgaaaacaagcactatcgatagtgcttgttttCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCata                                             >  1:1532744‑M2/45‑91 (MQ=255)

                                              aaCGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCata                                             >  1:828813/1‑91 (MQ=255)

                                              aaCGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCata                                             >  1:2339027/1‑91 (MQ=255)

                                              aaCGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCata                                             >  1:969214/1‑91 (MQ=255)

                                              aaCGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCata                                             >  2:2830504/1‑91 (MQ=255)

                                               aCGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCatgg                                            <  1:1417856/91‑3 (MQ=255)

                                                cGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATc                                           >  2:313846/1‑91 (MQ=255)

                                                  tAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCAt                                         <  2:2090899/91‑1 (MQ=255)

                                                  tAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCAt                                         <  1:790148/91‑1 (MQ=255)

                                                  tAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCAt                                         <  1:3413659/91‑1 (MQ=255)

                                                  tAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCAt                                         <  1:3758830/91‑1 (MQ=255)

                                                   aaaaaaaCAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATa                                        <  2:2117878/91‑1 (MQ=255)

                                                     aaaaaCAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATAcc                                      <  1:2696255/91‑1 (MQ=255)

                                                      AAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCa                                     >  2:1456036‑M1/1‑91 (MQ=255)

                                                      AAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCa                                     <  1:2837601‑M1/91‑1 (MQ=255)

                                                      AAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCa                                     <  1:28765‑M1/91‑1 (MQ=255)

                                                       AAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTACAATTTCTGACCATATCATACCAt                                    <  2:1604262‑M1/91‑1 (MQ=255)

                                                       AAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCAt                                    <  1:2841878‑M1/91‑1 (MQ=255)

                                                         ACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTg                                  >  2:3260746‑M1/1‑91 (MQ=255)

                                                         ACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTg                                  >  2:2327036‑M1/1‑91 (MQ=255)

                                                          CAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGa                                 >  1:457205‑M1/1‑91 (MQ=255)

                                                           aagcactatcgtaatggtagttgcttgttttCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGAt                                >  2:2924551‑M2/32‑91 (MQ=255)

                                                           AAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGAt                                >  1:2145368‑M1/1‑91 (MQ=255)

                                                            agcactatcgtaatggtagttgcttgttttCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGAtt                               >  1:808292‑M2/31‑91 (MQ=255)

                                                             GCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTa                              <  1:2253345‑M1/91‑1 (MQ=255)

                                                             GCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTa                              <  1:2596078‑M1/91‑1 (MQ=255)

                                                              cactatcgtaatggtagttgcttgttttCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTAc                             >  1:2314779‑M2/29‑91 (MQ=255)

                                                              cactatcgtaatggtagttgcttgttttCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTAc                             >  1:3396117‑M2/29‑91 (MQ=255)

                                                              cactatcgtaatggtagttgcttgttttCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTAc                             >  1:783174‑M2/29‑91 (MQ=255)

                                                              cactatcgtaatggtagttgcttgttttCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTAc                             >  2:2344736‑M2/29‑91 (MQ=255)

                                                              cactatcgtaatggtagttgcttgttttCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTAc                             >  1:3697134‑M2/29‑91 (MQ=255)

                                                              CAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTAc                             <  2:2597383‑M1/91‑1 (MQ=255)

                                                               actatcgtaatggtagttgcttgttttCAAAAAATTTTATAATTGTTTTGGCTTAGCTAAAATTTCTGACCATATCATACCATTGATTACt                            >  2:3660938‑M2/28‑91 (MQ=255)

                                                               AACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACt                            >  1:1172450‑M1/1‑91 (MQ=255)

                                                                aCTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACtt                           <  2:1860125/91‑1 (MQ=255)

                                                                 tatcgtaatggtagttgcttgttttCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTc                          >  1:3007697‑M2/26‑91 (MQ=255)

                                                                 cTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTc                          >  1:3021216/1‑91 (MQ=255)

                                                                   aCCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCAt                        >  2:2729527/1‑91 (MQ=255)

                                                                     cATTACGATAGTGCTTGTTTTCAAAAAATTGTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCt                      <  2:1185539/91‑1 (MQ=255)

                                                                      aTTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCtt                     <  1:3649847/91‑1 (MQ=255)

                                                                       ttACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCttt                    <  2:2353424/91‑1 (MQ=255)

                                                                        tACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTa                   >  1:1880959/1‑91 (MQ=255)

                                                                         aCGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTAt                  <  1:1724277/91‑1 (MQ=255)

                                                                          cGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATc                 >  1:870105/1‑91 (MQ=255)

                                                                          cGATAGTGCTTGTTTTCAAAAAATTTTATAAATGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATc                 >  1:1867797/1‑91 (MQ=255)

                                                                             tAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCaaa              >  2:3450557/1‑91 (MQ=255)

                                                                                 gcttgttttCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTgg          <  2:2286719‑M2/82‑1 (MQ=255)

                                                                                 gcttgttttCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTgg          <  1:256764‑M2/82‑1 (MQ=255)

                                                                                 gcttgttttCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTgg          <  2:1366048‑M2/82‑1 (MQ=255)

                                                                                  cttgttttCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATTCCATTGATTACTTCATCTTTATCAAATTGGa         <  1:620464‑M2/83‑1 (MQ=255)

                                                                                  cttgttttCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGa         <  2:1431526‑M2/83‑1 (MQ=255)

                                                                                  cttgttttCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGa         <  2:3749332‑M2/83‑1 (MQ=255)

                                                                                  cttgttttCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGa         >  1:844413‑M2/9‑91 (MQ=255)

                                                                                  cttgttttCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGa         <  1:353773‑M2/83‑1 (MQ=255)

                                                                                      ttttCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGAACGc     <  2:309335‑M2/87‑1 (MQ=255)

                                                                                      tttgCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATGAAATTGGAACGc     <  1:3002554‑M2/87‑1 (MQ=255)

                                                                                       tttCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGAACGCt    <  1:193882‑M2/88‑1 (MQ=255)

                                                                                         tCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGAACGCTGa  >  1:3488604‑M2/2‑91 (MQ=255)

TAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGAACGCTGA  >  USA300TCH1516_ALE/1682460‑1682639

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.