BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1747135	151 (0.790)	16 (0.100)	11/132	NT	10.2%	intergenic (‑169/+34)	recJ/USA300HOU_RS08710	Single‑stranded‑DNA‑specific exonuclease RecJ/Heme uptake protein MmpL11
*	?	USA300TCH1516_ALE	= 1747146	157 (1.000)	16 (0.100)	11/132	NT	10.2%	intergenic (‑180/+23)	recJ/USA300HOU_RS08710	Single‑stranded‑DNA‑specific exonuclease RecJ/Heme uptake protein MmpL11

Only 100 of 241 total aligned reads displayed.

ACCATTTTTTAAAAATGAATGCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGAT  >  USA300TCH1516_ALE/1747056‑1747235

aCCATTTTTTAAAAATGAATGCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGt                                                                                           >  1:1106759/1‑91 (MQ=255)

aCCATTTTTTAAAAATGAATGCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGt                                                                                           <  2:2279023/91‑1 (MQ=255)

aCCATTTTTTAAAAATGAATGCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGt                                                                                           >  1:2919661/1‑91 (MQ=255)

  cATTTTTTAAAAATGAATGCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTtt                                                                                         <  2:2266400‑M2/91‑3 (MQ=255)

    ttttttAAAAATGAATGCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTttca                                                                                       >  1:1802892‑M2/1‑87 (MQ=255)

    ttttttAAAAATGAATGCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTttca                                                                                       >  1:1693781‑M2/1‑87 (MQ=255)

       tttAAAAATGAATGCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTttcacat                                                                                    >  2:1489863‑M2/1‑84 (MQ=255)

       tttAAAAATGAATGCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTttcacat                                                                                    >  1:3042861‑M2/1‑84 (MQ=255)

       tttAAAAATGAATGCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTttcacat                                                                                    <  2:3520454‑M2/91‑8 (MQ=255)

       tttAAAAATGAATGCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTttcacat                                                                                    >  1:79111‑M2/1‑84 (MQ=255)

        ttAAAAATGAATGCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTttcacata                                                                                   <  1:1210627‑M2/91‑9 (MQ=255)

        taaaaaatgAATGCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTttcacata                                                                                   <  1:3830359‑M2/89‑9 (MQ=255)

         tAAAAATGAATGCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTttcacatac                                                                                  >  1:328794‑M2/1‑82 (MQ=255)

          aaaaaTGAATGCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTttcacatacc                                                                                 <  1:2441029‑M2/91‑11 (MQ=255)

           aaaaTGAATGCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTttcacgtaccg                                                                                <  2:3575333‑M2/91‑12 (MQ=255)

           aaaaTGAATGCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTttcacataccg                                                                                >  1:3869558‑M2/1‑80 (MQ=255)

           aaaaTGAATGCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTttcacataccg                                                                                <  1:2114817‑M2/91‑12 (MQ=255)

           aaaaTGAATGCGGGAACTTATTTATATATATCTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGCttcacataccg                                                                                <  2:2963478‑M2/91‑12 (MQ=255)

           aaaaTGAATGCGAGAACTTATTTATATATATTTTGTTAAATTAAAAAAAAGAAAAAAGCGGTATGTGAACTCTTTATTGTttcacataccg                                                                                >  2:1617518‑M2/1‑80 (MQ=255)

             gatgaatgcGGGAACTTATTTATATAGATTTTGTTTAATTTAAATAGAGTAAAAAGCGGTATGTGAACTCTTTATTGTttcacataccgct                                                                              >  1:144583‑M2/2‑78 (MQ=255)

             aatgaatgCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTttcacataccgct                                                                              >  1:1126567‑M2/1‑78 (MQ=255)

              atgaatgCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTttcacataccgctt                                                                             >  1:1298606‑M2/1‑77 (MQ=255)

               tgaatgCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTa                                                                            <  2:1718862/91‑1 (MQ=255)

                gaatgCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTaa                                                                           >  1:1432530/1‑91 (MQ=255)

                  atgCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAAtt                                                                         >  1:3276480/1‑91 (MQ=255)

                    gCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCa                                                                       >  1:3052727/1‑91 (MQ=255)

                     cGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCAt                                                                      >  1:958842/1‑91 (MQ=255)

                         aaCTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTa                                                                  >  1:642507/1‑91 (MQ=255)

                         aaCTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTa                                                                  >  1:2841072/1‑91 (MQ=255)

                         aaCTTATTTATAGATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTa                                                                  >  1:2980466/1‑91 (MQ=255)

                             tatttatATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACt                                                              <  1:1392349/91‑1 (MQ=255)

                              atttatATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTa                                                             >  1:826097/1‑91 (MQ=255)

                              atttatATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTa                                                             <  1:1206378/91‑1 (MQ=255)

                               tttatATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTaa                                                            >  2:3534088/1‑91 (MQ=255)

                               cttatATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTaa                                                            <  2:3844164/90‑1 (MQ=255)

                                  atatatatTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAAt                                                         >  2:3398414/1‑91 (MQ=255)

                                     tatatTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCtt                                                      <  2:2872300/91‑1 (MQ=255)

                                     tatatTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCtt                                                      <  2:1390811/91‑1 (MQ=255)

                                     tatatTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCtt                                                      <  2:3080077/91‑1 (MQ=255)

                                      atatTTTGTTAAATTTAAATACAGTAAAAAGCGGTATGTGCACTCTTTATTGTttcacataccgctttttactttatttaactttaacaaa                                                     <  2:569614‑M2/91‑39 (MQ=255)

                                       tatTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCtttt                                                    >  2:1006895/1‑91 (MQ=255)

                                          tttGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCAt                                                 <  2:3094348/91‑1 (MQ=255)

                                           ttGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATc                                                <  2:423885/91‑1 (MQ=255)

                                             tttaaatttaaatAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGt                                              <  2:2089371/90‑1 (MQ=255)

                                             gTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGt                                              <  2:2054456/91‑1 (MQ=255)

                                              ttaaatttaaatAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGtt                                             <  1:2232178/91‑1 (MQ=255)

                                              ttaaatttaaatAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGtt                                             >  2:243452/1‑91 (MQ=255)

                                               taaatttaaatAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTc                                            <  1:2050895/91‑1 (MQ=255)

                                                aaatttaaatAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCg                                           <  1:217174/91‑1 (MQ=255)

                                                aaatttaaatAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCg                                           >  2:1139620/1‑91 (MQ=255)

                                                 aatttaaatAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGa                                          >  2:195701/1‑91 (MQ=255)

                                                 aatttaaatAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGa                                          >  2:1250633/1‑91 (MQ=255)

                                                  atttaaatAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGAt                                         >  1:662514/1‑91 (MQ=255)

                                                  atttaaatAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGAt                                         <  1:2084155/91‑1 (MQ=255)

                                                  atttaaatAAAGTAAAAAGCGGTATGTGAACTATTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGAt                                         <  1:3301172/91‑1 (MQ=255)

                                                   tttaaatAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGAtt                                        <  1:391624/91‑1 (MQ=255)

                                                   tttaaatAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGAtt                                        <  2:3310342/91‑1 (MQ=255)

                                                    ttaaatAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGAttt                                       <  2:3216082/91‑1 (MQ=255)

                                                      aaataaaGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGAtttct                                     <  2:1993817/91‑1 (MQ=255)

                                                      aaataaaGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCACTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGAtttct                                     <  2:105730/91‑1 (MQ=255)

                                                       aataaaGTAAAAAGCGGTATGTGAACTCTTTATTGTttcacataccgctttttactttatttaaatttaacaaaatatatataaataagtt                                    <  2:157595‑M2/91‑56 (MQ=255)

                                                       aataaaGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGAtttctt                                    >  2:627909/1‑91 (MQ=255)

                                                       aataaaGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGAtttctt                                    >  2:3353746/1‑91 (MQ=255)

                                                          aaaGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGAtttcttttc                                 >  2:2464108/1‑91 (MQ=255)

                                                          aaaGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGAtttcttttc                                 <  2:701188/91‑1 (MQ=255)

                                                          aaaGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGAtttcttttc                                 <  2:464064/91‑1 (MQ=255)

                                                            aGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATttcttttctt                               <  1:2302049/91‑1 (MQ=255)

                                                            aGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATttcttttctt                               <  1:1548863/91‑1 (MQ=255)

                                                             gTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTtcttttcttt                              >  1:1872666/1‑91 (MQ=255)

                                                             gTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTtcttttcttt                              <  1:2886511/91‑1 (MQ=255)

                                                                 aaaGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGCTTTCTTTTCTTtatat                          >  2:2981429/1‑91 (MQ=255)

                                                                 aaaGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTtatat                          >  2:1929244/1‑91 (MQ=255)

                                                                 aaaGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTtatat                          <  1:2458349/91‑1 (MQ=255)

                                                                 aaaGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTtatat                          >  2:2799434/1‑91 (MQ=255)

                                                                  aaGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTtatata                         >  1:314973/1‑91 (MQ=255)

                                                                   aGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGCTTTCTTTTCTTTATATAc                        >  2:2583964/1‑91 (MQ=255)

                                                                   aGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATAc                        >  1:1652209/1‑91 (MQ=255)

                                                                   aGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATAc                        >  1:3638929/1‑91 (MQ=255)

                                                                   aGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATAc                        >  1:345977/1‑91 (MQ=255)

                                                                     cGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTc                                            >  1:493041/1‑69 (MQ=255)

                                                                     cGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACaa                      <  2:1906374/91‑1 (MQ=255)

                                                                      ggTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAAc                     <  1:2775660/91‑1 (MQ=255)

                                                                       gTATGTGAACTCTTTATTGTttcacataccgctttttactttatttaaatttaacaaaatatatataaataagttcccgcattcattttta                    <  1:2507999‑M2/91‑72 (MQ=255)

                                                                       gTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTTTTTTCTTTATATACAACt                    >  1:3586266/1‑91 (MQ=255)

                                                                          tgtgAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAAt                 >  2:3754564/1‑91 (MQ=255)

                                                                           gtgAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAAtt                >  1:3718733/1‑91 (MQ=255)

                                                                            tgAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAAttt               <  1:1279460/91‑1 (MQ=255)

                                                                               aCTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTtgtg            >  2:1827475/1‑91 (MQ=255)

                                                                                ctctTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTgtgt           >  1:557982/1‑91 (MQ=255)

                                                                                ctctTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTgtgt           <  2:2684099/91‑1 (MQ=255)

                                                                                  ctTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGttt         >  1:1046236/1‑91 (MQ=255)

                                                                                  ctTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGttt         <  1:297271/91‑1 (MQ=255)

                                                                                    ttACTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGCTTCg       <  1:3056995/91‑1 (MQ=255)

                                                                                     tATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCgg      <  2:3071252/91‑1 (MQ=255)

                                                                                     tATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCgg      >  2:1958275/1‑91 (MQ=255)

                                                                                      aTTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGc     <  1:2768454/91‑1 (MQ=255)

                                                                                      aTTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGc     >  2:2123031/1‑91 (MQ=255)

                                                                                      aTTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGc     >  1:3212621/1‑91 (MQ=255)

                                                                                        tGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGa   >  1:230370/1‑91 (MQ=255)

                                                                                         gTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGAt  >  2:1493757/1‑91 (MQ=255)

ACCATTTTTTAAAAATGAATGCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGAT  >  USA300TCH1516_ALE/1747056‑1747235

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.