BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1766678 =	153 (0.800)	14 (0.080)	6/140	NT	8.9%	intergenic (+22/+201)	tag/USA300HOU_RS08820	DNA‑3‑methyladenine glycosylase 1/hypothetical protein
*	?	USA300TCH1516_ALE	1766721 =	154 (0.930)	14 (0.080)	6/140	NT	8.9%	intergenic (+65/+158)	tag/USA300HOU_RS08820	DNA‑3‑methyladenine glycosylase 1/hypothetical protein

Only 100 of 269 total aligned reads displayed.

TCCATCAAAGCCTAAACATAATTAATTTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGATATCTTAATCTAAAAATAGATGTAC  >  USA300TCH1516_ALE/1766632‑1766810

tCCATCAAAGCCTAAACATAATTAATTTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGttttt                                                                                          >  2:1860323/1‑91 (MQ=255)

tCCATCAAAGCCCAAACATAATTAATTTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGttttt                                                                                          >  1:2968467/1‑91 (MQ=255)

 ccATCAAAGCCTAAACATAATTAATTTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGtttttt                                                                                         >  1:260749/1‑91 (MQ=255)

 ccATCAAAGCCTAAACATAATTAATTTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGtttttt                                                                                         <  1:1452839/91‑1 (MQ=255)

  cATCAAAGCCTAAACATAATTAATTTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTa                                                                                        <  2:196888/91‑1 (MQ=255)

   aTCAAAGCCTAAACATAATTAATTTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTaa                                                                                       <  2:1114654/91‑1 (MQ=255)

   aTCAAAGCCTAAACATAATTAATTTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTaa                                                                                       <  2:1114822/91‑1 (MQ=255)

    tCAAAGCCTAAACATAATTAATTTGCTATAGCATCATACAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAAt                                                                                      >  1:1714265/1‑91 (MQ=255)

     cAAAGCCTAAACATAATTAATTTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAAtg                                                                                     >  2:3279826/1‑91 (MQ=255)

      aaaGCCTAAACATAATTAATTTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAAtgt                                                                                    >  1:2411740/1‑91 (MQ=255)

        aGCCTAAACATAATTAATTTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGa                                                                                  >  1:3490252/1‑91 (MQ=255)

        aGCCTAAACATAATTAATTTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGa                                                                                  >  1:2169744/1‑91 (MQ=255)

         gCCTAAACATAATTAATTTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGaa                                                                                 >  2:1396246/1‑91 (MQ=255)

         gCCTAAACATAATTAATTTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGaa                                                                                 >  1:388931/1‑91 (MQ=255)

         gCCTAAACATAATTAATTTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGaa                                                                                 <  1:579855/91‑1 (MQ=255)

         gCCTAAACATAATTAATTTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGaa                                                                                 <  1:3005335/91‑1 (MQ=255)

            tAAACATAATTAATTTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAAt                                                                              >  1:3359002/1‑91 (MQ=255)

            tAAACATAATTAATTTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAAt                                                                              >  1:883528/1‑91 (MQ=255)

            tAAACATAATTAATTTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAAt                                                                              <  2:3011261/91‑1 (MQ=255)

             aaaCATAATTAATTTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAAtt                                                                             <  1:985955/91‑1 (MQ=255)

             aaaCATAATTAATTTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAAtt                                                                             >  1:1338706/1‑91 (MQ=255)

              aaCATAATTAATTTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAAttt                                                                            >  1:2275390/1‑91 (MQ=255)

              aaCATAATTAATTTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAAttt                                                                            >  1:1871653/1‑91 (MQ=255)

              aaCATAATTAATTTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAAttt                                                                            <  1:288577/91‑1 (MQ=255)

               aCATAATTAATTTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAAtgtg                                                                                   >  2:2504337/1‑83 (MQ=255)

               aCATAATTAATTTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAAtgtg                                                                                   <  1:2504337/83‑1 (MQ=255)

               aCATAATTAATTTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTa                                                                           >  2:3301644/1‑91 (MQ=255)

                 aTAATTAATTTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTAtt                                                                         >  2:2412556/1‑91 (MQ=255)

                   aattaattTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCa                                                                       >  1:1397203/1‑91 (MQ=255)

                      taattTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAAt                                                                    >  2:1793136/1‑91 (MQ=255)

                      taattTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAAt                                                                    <  1:1277995/91‑1 (MQ=255)

                         tttGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCAt                                                                 >  1:1821930/1‑91 (MQ=255)

                          ttGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAATTTTATTCAAATCATa                                                                >  2:3679537/1‑91 (MQ=255)

                          ttGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATa                                                                <  2:1504883/91‑1 (MQ=255)

                          ttGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATa                                                                >  1:3772661/1‑91 (MQ=255)

                              tataGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGtt                                                            >  1:2415915/1‑91 (MQ=255)

                               ataGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTa                                                           <  1:49559/91‑1 (MQ=255)

                                 aGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTaaa                                                         <  2:2091304/91‑1 (MQ=255)

                                 aGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTaaa                                                         <  2:3504794/91‑1 (MQ=255)

                                  gCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAg                                                        >  1:1677259/1‑91 (MQ=255)

                                  gCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAg                                                        >  1:1576162/1‑91 (MQ=255)

                                     tcatAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTc                                                     <  1:3149929/91‑1 (MQ=255)

                                      catAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTcc                                                    <  1:2747983/91‑1 (MQ=255)

                                      catAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTcc                                                    <  1:220183/91‑1 (MQ=255)

                                       atAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCa                                                   >  1:1747365/1‑91 (MQ=255)

                                         aaaGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAg                                                 >  1:1404998/1‑91 (MQ=255)

                                            gTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTa                                              >  2:2269615/1‑91 (MQ=255)

                                               AACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATg                                           >  2:2628346‑M1/1‑91 (MQ=255)

                                               AACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATg                                           <  2:3631375‑M1/91‑1 (MQ=255)

                                                acgagacagtctattagttaaaaatagatgatgtctcgtttTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGc                                          >  2:116751‑M2/42‑91 (MQ=255)

                                                acgagacagtctattagttaaaaatagatgatgtctcgtttTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGc                                          >  1:1100354‑M2/42‑91 (MQ=255)

                                                 cgagacagtctattagttaaaaatagatgatgtctcgtttTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGct                                         >  2:2237398‑M2/41‑91 (MQ=255)

                                                  GAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGctc                                        <  2:2064545‑M1/91‑1 (MQ=255)

                                                   AGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGctct                                       <  2:546415‑M1/91‑1 (MQ=255)

                                                   AGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGctct                                       <  2:3103214‑M1/91‑1 (MQ=255)

                                                   AGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGctct                                       <  2:1531864‑M1/91‑1 (MQ=255)

                                                    GACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTg                                      <  2:90852‑M1/91‑1 (MQ=255)

                                                    GACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTg                                      <  1:3424583‑M1/91‑1 (MQ=255)

                                                     ACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGc                                     <  2:2244413‑M1/91‑1 (MQ=255)

                                                     ACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGc                                     <  1:1174696‑M1/91‑1 (MQ=255)

                                                     ACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGc                                     >  1:2107445‑M1/1‑91 (MQ=255)

                                                     ACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGc                                     >  1:253629‑M1/1‑91 (MQ=255)

                                                      cagtctattagttaaaaatagatgatgtctcgtttTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCt                                    >  2:1062972‑M2/36‑91 (MQ=255)

                                                       ATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTa                                   >  2:1571196‑M1/1‑91 (MQ=255)

                                                         catcTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATACAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAat                                 <  2:3185792/91‑1 (MQ=255)

                                                          atcTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAata                                <  2:1210257/91‑1 (MQ=255)

                                                           tcTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAatat                               <  1:203560/91‑1 (MQ=255)

                                                           tcTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAatat                               <  1:3823228/91‑1 (MQ=255)

                                                           tcTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAatat                               >  2:691111/1‑91 (MQ=255)

                                                           tcTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAatat                               <  1:753389/91‑1 (MQ=255)

                                                             tATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTa                             >  2:3808300/1‑91 (MQ=255)

                                                                ttttAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGat                          <  1:1060501/91‑1 (MQ=255)

                                                                   tAACTAATAGACTGTCTCGTTTTTTTTTTTTTTTTTTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGATATc                       >  2:214363/1‑91 (MQ=255)

                                                                   tAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCACGTTAATGCTCTGCTAATATTAGATATc                       >  1:1601947/1‑91 (MQ=255)

                                                                   tAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAg                            >  2:3398302/1‑86 (MQ=255)

                                                                   tAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGATATc                       >  2:1351531/1‑91 (MQ=255)

                                                                     aCTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGATATCtt                     >  1:1542646/1‑91 (MQ=255)

                                                                       tAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGATATCTTaa                   >  1:200826/1‑91 (MQ=255)

                                                                         aTAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGATATCTTAATc                 >  2:1798189/1‑91 (MQ=255)

                                                                          tAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGATATCTTAATCt                >  1:1180018/1‑91 (MQ=255)

                                                                          tAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGATATCTTAATCt                <  2:1322317/91‑1 (MQ=255)

                                                                           aGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGATATCTTAATCTa               <  2:1163021/91‑1 (MQ=255)

                                                                           aGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGATATCTTAATCTa               >  1:3304274/1‑91 (MQ=255)

                                                                           aGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGATATCTTAATCTa               >  1:3304556/1‑91 (MQ=255)

                                                                           aGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGATATCTTAATCTa               >  2:1705922/1‑91 (MQ=255)

                                                                            gACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGATATCTTAATCTaa              >  2:2305600/1‑91 (MQ=255)

                                                                             aCTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGATATCTTAATCTaaa             <  1:971319/91‑1 (MQ=255)

                                                                             aCTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGATATCTTAATCTaaa             <  2:2779800/91‑1 (MQ=255)

                                                                              cTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGATATCTTAATCTaaaa            >  1:1860102/1‑91 (MQ=255)

                                                                               tgtctcgtttTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGATATCTTAATCTaaaaa           >  2:429407‑M2/11‑91 (MQ=255)

                                                                                  ctcgtttTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGATATCTTAATCTAAAAATAg        <  2:2835339‑M2/84‑1 (MQ=255)

                                                                                  ctcgtttTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGATATCTTAATCTAAAAATAg        >  2:3508389‑M2/8‑91 (MQ=255)

                                                                                  ctcgtttTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGATATCTTAATCTAAAAATAg        >  2:2077055‑M2/8‑91 (MQ=255)

                                                                                     gtttTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGATATCTTAATCTAAAAATAGATg     <  2:1993775‑M2/87‑1 (MQ=255)

                                                                                      tttTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGATATCTTAATCTAAAAATAGATGt    <  1:3734464‑M2/88‑1 (MQ=255)

                                                                                       ttTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGATATCTTAATCTAAAAATAGATGTa   <  2:517523‑M2/89‑1 (MQ=255)

                                                                                        tTTTAATGTGAAATTTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGATATCTTAATCTAAAAATAGATGTAc  <  1:3679537‑M2/90‑1 (MQ=255)

                                                                                        tTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGATATCTTAATCTAAAAATAGATGTAc  <  1:2289003‑M2/90‑1 (MQ=255)

                                                                                        tTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGATATCTTAATCTAAAAATAGATGTAc  <  2:2168839‑M2/90‑1 (MQ=255)

                                                                                        tTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATAATAGATATCTTAATCTAAAAATAGATGTAc  <  2:2640619‑M2/90‑1 (MQ=255)

TCCATCAAAGCCTAAACATAATTAATTTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGATATCTTAATCTAAAAATAGATGTAC  >  USA300TCH1516_ALE/1766632‑1766810

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.