BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1797508	171 (0.900)	22 (0.130)	15/146	NT	11.7%	coding (283/1665 nt)	phoR	Alkaline phosphatase synthesis sensor protein PhoR
*	?	USA300TCH1516_ALE	= 1797517	176 (1.010)	22 (0.130)	15/146	NT	11.7%	coding (274/1665 nt)	phoR	Alkaline phosphatase synthesis sensor protein PhoR

Only 100 of 245 total aligned reads displayed.

TATTGTAACCTTTAATCCATACATGATAACCGTTAACCTTCTTATTAAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCATGCTTAGTTATCAATAAATCTATATTTTGCTGTTTTACAATTTTTTTAAC  >  USA300TCH1516_ALE/1797427‑1797607

tATTGTAACCTTTAATCCATACATGATAACCGTTAACCTTCTTATTAAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTgg                                                                                            <  2:2601423/91‑1 (MQ=255)

 aTTGTAACCTTTAATCCATACATGATAACCGTTAACCTTCTTATTAAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTGGg                                                                                           >  1:2904874‑M2/1‑90 (MQ=255)

     tAACCTTTAATCCATACATGATAACCGTTAACCTTCTTATTAAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTGGgatag                                                                                       <  1:3678679‑M2/91‑6 (MQ=255)

       aCCTTTAATCCATACATGATAACCGTTAACCTTCTTATTAAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTGGgatagct                                                                                     <  2:1655329‑M2/91‑8 (MQ=255)

        ccTTTAATCCATACATGATAACCGTTAACCTTCTTATTAAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCtt                                                                                    <  1:2880331/91‑1 (MQ=255)

        ccTTTAATCCATACATGATAACCGTTAACCTTCTTATTAAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCtt                                                                                    <  1:3403330/91‑1 (MQ=255)

         cTTTAATCCATACATGATAACCGTTAACCTTCTTATTAAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCttt                                                                                   >  1:2226540/1‑91 (MQ=255)

           ttAATCCATACATGATAACCGTTAACCTTCTTATTAAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCa                                                                                 <  1:2545970/91‑1 (MQ=255)

            tAATCCATACATGATAACCGTTAACCTTCTTATTAAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAg                                                                                >  1:3258055/1‑91 (MQ=255)

            tAATCCATACATGATAACCGTTAACCTTCTTATTAAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAg                                                                                >  2:34518/1‑91 (MQ=255)

              aTCCATACATGATAACCGTTAACCTTCTTATTAAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGtt                                                                              >  2:378329/1‑91 (MQ=255)

              aTCCATACATGATAACCGTTAACCTTCTTATTAAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGtt                                                                              >  1:3524360/1‑91 (MQ=255)

               tCCATACATGATAACCGTTAACCTTCTTATTAAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGttt                                                                             <  2:852887/91‑1 (MQ=255)

                ccATACATGATAACCGTTAACCTTCTTATTAAAAATAAAAACGTCCCTTTTTTGAATCTTTCTCTCACTATTTGTgttagctatattctac                                                                            <  2:2194254‑M2/91‑17 (MQ=255)

                ccATACATGATAACCGTTAACCTTCTTATTAAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTg                                                                            <  1:893630/91‑1 (MQ=255)

                ccATACATGATAACCGTTAACCTTCTTATTAAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTg                                                                            >  1:2450497/1‑91 (MQ=255)

                 cATACATGATAACCGTTAACCTTCTTATTAAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGc                                                                           <  1:725726/91‑1 (MQ=255)

                 cATACATGATAACCGTTAACCTTCTTATTAAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGc                                                                           >  2:3307025/1‑91 (MQ=255)

                 cATACATGATAACCGTTAACCTTCTTATTAAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGc                                                                           >  2:3089174/1‑91 (MQ=255)

                  aTACATGATAACCGTTAACCTTCTTATTAAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGcc                                                                          <  2:835860/91‑1 (MQ=255)

                   tACATGATAACCGTTAACCTTCTTATTAAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCa                                                                         <  2:225354/91‑1 (MQ=255)

                   tACATGATAACCGTTAACCTTCTTATTAAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCa                                                                         >  2:209224/1‑91 (MQ=255)

                   tACATGATAACCGTAAACCTTCTTATTAAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCa                                                                         <  2:2385781/91‑1 (MQ=255)

                    aCATGATAACCGTTAACCTTCTTATTAAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCac                                                                        >  2:3191780/1‑91 (MQ=255)

                    aCATGATAACCGTTAACCTTCTTATTAAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCac                                                                        >  1:3808496/1‑91 (MQ=255)

                      aTGATAACCGTTAACCTTCTTATTAAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCacta                                                                      >  2:1388527/1‑91 (MQ=255)

                         aTAACCGTTAACCTTCTTATGAAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCCCAAATAGTgatagctatattcaaaaaagggacg                                                                   >  1:3736909‑M2/1‑66 (MQ=255)

                          tAACCGTTAACCTTCTTATTAAAAATAAAAACGTCCCTTTTTTGATTATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTaa                                                                  >  2:1532228/1‑91 (MQ=255)

                          tAACCGTTAACCTTCTTATTAAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTaa                                                                  >  2:134123/1‑91 (MQ=255)

                          tAACCGTTAACCTTCTTATTAAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTaa                                                                  <  2:637920/91‑1 (MQ=255)

                           aaCCGTTAACCTTCTTATTAAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTaaa                                                                 <  1:841472/91‑1 (MQ=255)

                           aaCCGTTAACCTTCTTATTAAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTaaa                                                                 >  1:1563395/1‑91 (MQ=255)

                           aaCCGTTAACCTTCTTATTAAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTaaa                                                                 >  2:1428624/1‑91 (MQ=255)

                             ccGTTAACCTTCTTATTAAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAaca                                                               <  2:3023245/91‑1 (MQ=255)

                             ccGTTAACCTTCTTATTAAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAaca                                                               <  2:419068/91‑1 (MQ=255)

                              cGTTAACCTTCTTATTAAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAacac                                                              <  1:1177860/91‑1 (MQ=255)

                              cGTTAACCTTCTTATTAAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAacac                                                              <  2:1056014/91‑1 (MQ=255)

                               gTTAACCTTCTTATTAAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACAcc                                                             >  2:134804/1‑91 (MQ=255)

                                ttAACCTTCTTATTAAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCt                                                            >  1:229447/1‑91 (MQ=255)

                                 tAACCTTCTTATTAAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCtt                                                           >  2:1933993/1‑91 (MQ=255)

                                   aCCTTCTTATTAAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCtttt                                                         >  1:2420805/1‑91 (MQ=255)

                                   aCCTTCTTATTAAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCtttt                                                         <  2:2069454/91‑1 (MQ=255)

                                    ccTTCTTATTAAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCttttt                                                        >  1:3046627/1‑91 (MQ=255)

                                    ccTTCTTATTAAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCttttt                                                        >  1:1004854/1‑91 (MQ=255)

                                      ttgttATTAAAAATAAAAACGTCCCTTTTTTGAATATAGCTAACCCAAATAGTgatagctatattcaaaaaagggacgtttttatttttaa                                                      >  2:3657319‑M2/1‑53 (MQ=255)

                                      ttcttATTAAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTAt                                                      >  2:581214/1‑91 (MQ=255)

                                        cttATTAAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTg                                                                            <  2:1879371/67‑1 (MQ=255)

                                        cttATTAAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAAGACCTTTTTATCa                                                    <  1:2982775/91‑1 (MQ=255)

                                         ttattaAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCAt                                                   >  2:385445/1‑91 (MQ=255)

                                         ttattaAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCAt                                                   >  2:2061086/1‑91 (MQ=255)

                                             taaaaataaaaaCGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCATGCtt                                               >  1:930128/1‑91 (MQ=255)

                                              aaaaataaaaaCGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCATGCTTa                                              <  1:645802/91‑1 (MQ=255)

                                              aaaaataaaaaCGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCATGCTTa                                              >  2:189876/1‑91 (MQ=255)

                                               aaaataaaaaCGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCATGCTTAg                                             >  1:1902260/1‑91 (MQ=255)

                                               aaaataaaaaCGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTCTCAGTTTGCCACTTCTAAACACCTTTTTATCATCCTTAg                                             >  1:3604947/1‑91 (MQ=255)

                                               aaaataaaaaCGACCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCATGCTTAg                                             >  1:2981987/1‑91 (MQ=255)

                                                aaataaaaaCGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCATGCTTAGt                                            >  1:12179/1‑91 (MQ=255)

                                                   taaaaaCGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCATGCTTAGTTAt                                         >  1:2179056/1‑91 (MQ=255)

                                                    aaaaaCGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCATGCTTAGTTATc                                        <  2:3273090/91‑1 (MQ=255)

                                                    aaaaaCGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCATGCTTAGTTATc                                        >  2:965948/1‑91 (MQ=255)

                                                     aaaaCGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCATGCTTAGTTATCa                                       >  1:1466802/1‑91 (MQ=255)

                                                     aaaaCGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCATGCTTAGTTATCa                                       >  1:1726511/1‑91 (MQ=255)

                                                     aaaaCGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCATGCTTAGTTATCa                                       >  1:1787467/1‑91 (MQ=255)

                                                      aaaCGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCATGCTTAGTTATCaa                                      <  1:1702989/91‑1 (MQ=255)

                                                       aaCGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCATGCTTAGTTATCAAt                                     >  2:2497511/1‑91 (MQ=255)

                                                            cccTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCATGCTTAGTTATCAATAAATc                                <  1:2329322/91‑1 (MQ=255)

                                                               ttttttGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCATGCTTAGTTATCAATAAATCtat                             >  2:1098713/1‑91 (MQ=255)

                                                                tttttGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCATGCTTAGTTATCAATAAATCtaca                            <  1:1655304/91‑3 (MQ=255)

                                                                 ttttGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCATGCTTAGTTATCAATAAATCTatat                           <  1:2527789/91‑1 (MQ=255)

                                                                  tttGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCATGCTTAGTTATCAATAAATCTATAtt                          <  1:1145468/91‑1 (MQ=255)

                                                                       atatAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCATGCTTAGTTATCAGTAAATCTATATTTTGCt                     >  1:964782/1‑91 (MQ=255)

                                                                        tataGCTATCACTATTTGGgatagctatattcaaaaaagggacgtttttatttttaataagaaggttaacggttatcatgtatggattaaa                    <  2:2680569‑M2/91‑73 (MQ=255)

                                                                        tataGCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCATGCTTAGTTATCAATAAATCTATATTTTGCTg                    >  2:3224998/1‑91 (MQ=255)

                                                                          taGCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCATACTTAGTTATCAATAAATCTATATTTTGCTGtt                  >  1:1086957/1‑91 (MQ=255)

                                                                          taGCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCATACTTAGTTATCAATAAATCTATATTTTGCTGtt                  >  1:361328/1‑91 (MQ=255)

                                                                           aGCTATCACTATTTGGgatagctatattcaaaaaagggacgtttttatttttaataagaaggttaacggttatcatgtatggattaaaggt                 <  1:1967959‑M2/91‑76 (MQ=255)

                                                                           aGCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCATGCTTAGTTATCAATAAATCTATATTTTGCTGttt                 >  1:1227735/1‑91 (MQ=255)

                                                                            gCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCATGCTTAGTTATCAATAAATCTATATTTTGCTGtttt                <  2:1198473/91‑1 (MQ=255)

                                                                            gCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCATGCTTAGTTATCAATAAATCTATATTTTGCTGtttt                <  2:1147461/91‑1 (MQ=255)

                                                                            acTATCACAAATTGGGATAGATGTCAGTTATACACAACTAAACACCTATTTATCATGCTTAGTTATCAATAAATGTATATTTTGCTGtttt                <  2:3685255/90‑1 (MQ=255)

                                                                             cTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCATGCTTAGTTATCAATAAATCTATATTTTGCTGTTTTa               <  1:3262801/91‑1 (MQ=255)

                                                                             cTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCATGCTTAGTTATCAATAAATCTATATTTTGCTGTTTTa               <  1:3797330/91‑1 (MQ=255)

                                                                              tATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCATGCTTAGTTATCAATAAATCTATATTTTGCTGTTTTAc              <  2:2850736/91‑1 (MQ=255)

                                                                              tATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCATGCTTAGTTATCAATAAATCTATATTTTGCTGTTTTAc              <  2:2018969/91‑1 (MQ=255)

                                                                                tCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCATGCTTAGTTATCAATAAATCTATATTTTGCTGTTTTACaa            >  2:439878/1‑91 (MQ=255)

                                                                                  aCTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCATGCTTAGTTATCAATAAATCTATATTTTGCTGTTTTACAAtt          <  2:1269886/91‑1 (MQ=255)

                                                                                  aCTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCATGCTTAGTTATCAATAAATCTATATTTTGCTGTTTTACAAtt          >  1:3165350/1‑91 (MQ=255)

                                                                                  aCTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCATGCTTAGTTATCAATAAATCTATATTTTGCTGTTTTACAAtt          <  2:1695891/91‑1 (MQ=255)

                                                                                   cTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCATGCTTAGTTATCAATAAATCTATATTTTGCTGTTTTACAAttt         <  1:1388527/91‑1 (MQ=255)

                                                                                   cTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCATGCTTAGTTAGCAATAAATCTATATTTTGCTGTTTTACAAttt         <  2:3808496/91‑1 (MQ=255)

                                                                                    tATTTGGgatagctatattcaaaaaagggacgtttttatttttaataagaaggttaacggttatcatgtatggattaaaggttacaataac        <  2:2886979‑M2/91‑85 (MQ=255)

                                                                                     aTTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCATGCTTAGTTATCAATAAATCTATATTTTGCTGTTTTACAAttttt       <  1:467152/91‑1 (MQ=255)

                                                                                      tttGGGATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCATGCTTAGTTATCAATAAATCTATATTTTGCTGTTTTACAAtttttt      <  1:184954/91‑1 (MQ=255)

                                                                                       ttGGGATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCATGCTTAGTTATCAATAAATCTATATTTTGCTGTTTTACAAttttttt     <  2:3492299/91‑1 (MQ=255)

                                                                                         gggATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCATGCTTAGTTATCAATAAATCTATATTTTGCTGTTTTACAATTTTTTTaa   >  1:670742/1‑91 (MQ=255)

                                                                                         gggATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCATGCTTAGTTATCAATAAATCTATATTTTGCTGTTTTACAATTTTTTTaa   >  2:3245911/1‑91 (MQ=255)

                                                                                         gggATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCATGCTTAGTTATCAATAAATCTATATTTTGCTGTTTTACAATTTTTTTaa   >  2:892028/1‑91 (MQ=255)

                                                                                          ggATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCATGCTTAGTTATCAATAAATCTATATTTTGCTGTTTTACAATTTTTTTAAc  >  2:1853217/1‑91 (MQ=255)

                                                                                          ggATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCATGCTTAGTTATCAATAAATCTATATTTTGCTGTTTTACAATTTTTTTAAc  <  1:2811057/91‑1 (MQ=255)

                                                                                          ggATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCATGCTTAGTTATCAATAAATCTATATTTTGCTGTTTTACAATTTTTTTAAc  <  1:3048924/91‑1 (MQ=255)

TATTGTAACCTTTAATCCATACATGATAACCGTTAACCTTCTTATTAAAAATAAAAACGTCCCTTTTTTGAATATAGCTATCACTATTTGGGATAGCTTTCAGTTTGCCACTACTAAACACCTTTTTATCATGCTTAGTTATCAATAAATCTATATTTTGCTGTTTTACAATTTTTTTAAC  >  USA300TCH1516_ALE/1797427‑1797607

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.