New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 1836947130 (0.680)17 (0.110) 10/132 NT 13.5% intergenic (+31/+119) serA/gph_2 D‑3‑phosphoglycerate dehydrogenase/Phosphoglycolate phosphatase
?USA300TCH1516_ALE = 1836967 111 (0.710)intergenic (+51/+99) serA/gph_2 D‑3‑phosphoglycerate dehydrogenase/Phosphoglycolate phosphatase

Only 100 of 232 total aligned reads displayed.

CAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAA  >  USA300TCH1516_ALE/1836877‑1837057
                                                                                          |                                                                                          
gtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCATTg                                                                                            >  1:3179195‑M1/58‑91 (MQ=255)
gtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCATTg                                                                                            >  1:1811648‑M1/58‑91 (MQ=255)
gtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCATTg                                                                                            >  2:2176734‑M1/58‑91 (MQ=255)
cAATCAAATTTGCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTg                                                                                            <  1:1837181/91‑1 (MQ=255)
 tagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCATTGc                                                                                           >  2:1167365‑M1/57‑91 (MQ=255)
 aaTCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAGGAAGACATTGGATTACTTCCATTGc                                                                                           <  1:3618033‑M2/91‑2 (MQ=255)
   tCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGctt                                                                                         >  2:2787142‑M2/1‑88 (MQ=255)
   tCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGctt                                                                                         <  2:1363276‑M2/91‑4 (MQ=255)
    cAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttc                                                                                        >  2:2446892‑M2/1‑87 (MQ=255)
    cAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttc                                                                                        <  1:2414608‑M2/91‑5 (MQ=255)
      aaTTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttctt                                                                                      >  1:1190468‑M2/1‑85 (MQ=255)
      aaTTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttctt                                                                                      <  1:2012737‑M2/91‑7 (MQ=255)
       aTTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttg                                                                                     >  1:2767977‑M2/1‑84 (MQ=255)
       aTTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttg                                                                                     <  1:380457‑M2/91‑8 (MQ=255)
        ttttCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttgg                                                                                    >  1:2674267‑M2/1‑83 (MQ=255)
        ttttCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttgg                                                                                    >  1:3708411‑M2/1‑83 (MQ=255)
        ttttCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttgg                                                                                    >  2:900717‑M2/1‑83 (MQ=255)
        ttttCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttgg                                                                                    >  2:3209322‑M2/1‑83 (MQ=255)
         tttCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggc                                                                                   >  1:2175371‑M2/1‑82 (MQ=255)
           tCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggcat                                                                                 >  1:1963498‑M2/1‑80 (MQ=255)
            cacaACTGAATTGACGGTACAGTCATAAACGATTTATGTAAATTCAAAATCCCAAGTAGTCATTGGATTACTTCCATTGcttcttggcatt                                                                                >  2:3184427‑M2/1‑79 (MQ=255)
            cacaACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggcatt                                                                                <  2:1651437‑M2/91‑13 (MQ=255)
             acaACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggcattt                                                                               <  1:2092753‑M2/91‑14 (MQ=255)
              caACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggcatttt                                                                              <  2:2734238‑M2/91‑15 (MQ=255)
                ccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCAtttttt                                                                            >  1:547826‑M1/42‑91 (MQ=255)
                  tGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCa                                                                          <  2:404418/91‑1 (MQ=255)
                   gAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCat                                                                         <  1:1761664/91‑1 (MQ=255)
                    aggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCatt                                                                        >  1:905115‑M1/38‑91 (MQ=255)
                    aaTTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCatt                                                                        >  1:1070204/1‑91 (MQ=255)
                    aaTTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCatt                                                                        >  1:1070853/1‑91 (MQ=255)
                       tGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCattatt                                                                     <  1:835350/91‑1 (MQ=255)
                       tGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCattatt                                                                     <  2:1593970/91‑1 (MQ=255)
                       tGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCattatt                                                                     <  1:1904370/91‑1 (MQ=255)
                       tGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCattatt                                                                     <  1:3429847/91‑1 (MQ=255)
                        ttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCAttatta                                                                    >  2:2812080‑M1/34‑91 (MQ=255)
                        gACGGTACAGTCCTAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCAttatta                                                                    >  1:2967373/1‑91 (MQ=255)
                        gACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCAttatta                                                                    <  1:669658/91‑1 (MQ=255)
                        gACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCAttatta                                                                    >  2:920876/1‑91 (MQ=255)
                         aCGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTaa                                                                   <  2:673901/91‑1 (MQ=255)
                         aCGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTaa                                                                   <  2:1199837/91‑1 (MQ=255)
                         aCGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTaa                                                                   <  2:485645/91‑1 (MQ=255)
                           ggTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAAtt                                                                 >  2:2014472/1‑91 (MQ=255)
                              aCAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCa                                                              >  2:1524069/1‑91 (MQ=255)
                              aCAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCa                                                              <  2:2590673/91‑1 (MQ=255)
                               cAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATAGCTTCTTGGCATTTTTTCATTATTAATTTCAt                                                             >  2:1697079/1‑91 (MQ=255)
                                aGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCAtt                                                            <  2:2012721/91‑1 (MQ=255)
                                  tCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCAttttt                                                                             >  2:1845728/1‑72 (MQ=255)
                                   cATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTa                                                         <  2:3339247/91‑1 (MQ=255)
                                   cATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTa                                                         <  2:3111908/91‑1 (MQ=255)
                                    aTAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACGTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTaa                                                        <  2:2995737/91‑1 (MQ=255)
                                     tAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAAc                                                       >  1:2483882/1‑91 (MQ=255)
                                        aCAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCa                                                    <  2:3733299/91‑1 (MQ=255)
                                        aCAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCa                                                    <  1:2928052/91‑1 (MQ=255)
                                          aaTTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAat                                                  <  2:1733038/91‑1 (MQ=255)
                                           aTTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAata                                                 >  1:1491951/1‑91 (MQ=255)
                                           aTTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAata                                                 >  2:1981132/1‑91 (MQ=255)
                                            tttATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAatat                                                >  2:130489/1‑91 (MQ=255)
                                            tttATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAatat                                                >  2:1254428/1‑91 (MQ=255)
                                            tttATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAatat                                                <  1:1577110/91‑1 (MQ=255)
                                              tATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGa                                              <  2:246175/91‑1 (MQ=255)
                                               aTGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGaa                                             >  2:2061750/1‑91 (MQ=255)
                                                tGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGaaa                                            <  1:1720828/91‑1 (MQ=255)
                                                tGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGaaa                                            <  1:1524069/91‑1 (MQ=255)
                                                tGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGaaa                                            >  1:2545248/1‑91 (MQ=255)
                                                tGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATCGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGaaa                                            <  2:3415005/91‑1 (MQ=255)
                                                    aaTTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCtt                                        >  1:2147621/1‑91 (MQ=255)
                                                     aTTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCttt                                       <  2:166426/91‑1 (MQ=255)
                                                     aTTCAAAATGCCAAGAAGACAATGGATTACTTCCATTGCTTCCTGGCATTTTTTCATCATTAATTTCATTGTAACTCAATATGAAAACttt                                       >  1:1511544/1‑91 (MQ=255)
                                                      ttCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTg                                      <  1:3392701/91‑1 (MQ=255)
                                                        cAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGt                                    <  2:530301/91‑1 (MQ=255)
                                                        cAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGt                                    <  1:102968/91‑1 (MQ=255)
                                                        cAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGt                                    >  1:1587628/1‑91 (MQ=255)
                                                        cAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGt                                    <  2:1585305/91‑1 (MQ=255)
                                                        cAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCACTTTTTCCTTATTAATTTCATTGTAACTCAATATGAACCCATTGGt                                    >  2:3499697/1‑91 (MQ=255)
                                                           aaTGCCAAGAAGACATTGGATTACTTCCATTGcttcttggcattttgaatttacataaattgtttatgactgtaccgtcaattcagtagtg                                 <  1:3010999‑M2/91‑60 (MQ=255)
                                                           AATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCa                                 <  1:2802969‑M1/91‑1 (MQ=255)
                                                             TGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAAt                               >  1:354290‑M1/1‑91 (MQ=255)
                                                             TGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAAt                               >  2:66757‑M1/1‑91 (MQ=255)
                                                              gCCAAGAAGACATTGGATTACTTCCATTGcttcttggcattttgaatttacataaattgtttatgactgtaccgtcaattcagttgtgaaa                              <  2:2350256‑M2/91‑63 (MQ=255)
                                                              GCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATc                              <  1:1086710‑M1/91‑1 (MQ=255)
                                                               CCAAGAATACATTGGATTACTTCCATTTCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCa                             >  2:1895480‑M1/1‑91 (MQ=255)
                                                               CCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCAttt                                                                               <  2:462806‑M1/41‑1 (MQ=255)
                                                               CCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCa                             <  2:1640138‑M1/91‑1 (MQ=255)
                                                                  AGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTc                          >  1:741260‑M1/1‑91 (MQ=255)
                                                                   GAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCa                         >  2:1416527‑M1/1‑91 (MQ=255)
                                                                     agaCATTGGATTACTTCCATTGcttcttggcattttgaatttacataaattgtttatgactgtaccgtcaattcagttgtgaaaatttgat                       <  2:3589285‑M2/91‑70 (MQ=255)
                                                                       aCATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTAc                     >  1:2287058/1‑91 (MQ=255)
                                                                        cATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACa                    >  1:2239011/1‑91 (MQ=255)
                                                                          ttGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAg                  >  2:811531/1‑91 (MQ=255)
                                                                           tGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGt                                    <  1:2462121/72‑1 (MQ=255)
                                                                              aTTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTAt              <  2:2302699/91‑1 (MQ=255)
                                                                                tACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGc            >  1:1388786/1‑91 (MQ=255)
                                                                                tACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGc            <  1:1229492/91‑1 (MQ=255)
                                                                                 aCTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCt           <  2:1491951/91‑1 (MQ=255)
                                                                                 aCTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCt           <  2:2653850/91‑1 (MQ=255)
                                                                                  cTTCCATTGcttcttggcattttgaatttacataaattgtttatgactgtaccgtcaattcagttgtgaaaatttgattgtattcaccaac          >  1:3589285‑M2/1‑9 (MQ=255)
                                                                                   ttCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGt         <  2:328430/91‑1 (MQ=255)
                                                                                      cATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCaa      <  2:3270404/91‑1 (MQ=255)
                                                                                       aTTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCaaa     <  1:2609945/91‑1 (MQ=255)
                                                                                          gCTTCTTGGCATTTTTTCTTTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAaacaa  >  2:3701962/1‑91 (MQ=255)
                                                                                          |                                                                                          
CAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAA  >  USA300TCH1516_ALE/1836877‑1837057

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.