BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1939370 =	204 (1.070)	15 (0.080)	8/154	NT	7.4%	intergenic (‑229/+134)	hsdM_2/splF	Type I restriction enzyme EcoKI M protein/Serine protease SplF
*	?	USA300TCH1516_ALE	1939419 =	178 (0.970)	15 (0.080)	8/154	NT	7.4%	intergenic (‑278/+85)	hsdM_2/splF	Type I restriction enzyme EcoKI M protein/Serine protease SplF

Only 100 of 228 total aligned reads displayed.

ATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGATTGGGTGAATGTCTAAGTTTTAATTATTT  >  USA300TCH1516_ALE/1939329‑1939509

   cTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATg                                                                                         >  2:665860/1‑91 (MQ=255)

   cTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATg                                                                                         <  2:2587103/91‑1 (MQ=255)

    ttAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGc                                                                                        <  1:102414/91‑1 (MQ=255)

      aaTGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCat                                                                                      <  2:2672348/91‑1 (MQ=255)

       ttattaatatatattgcattatttaatatgcatcAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCata                                                                                     >  1:980644‑M1/35‑91 (MQ=255)

       atgatgTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCata                                                                                     <  1:708434/91‑1 (MQ=255)

       atgatgTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCata                                                                                     >  2:2314459/1‑91 (MQ=255)

        tgatgTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCatat                                                                                    <  1:807372/91‑1 (MQ=255)

        tgatgTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCatat                                                                                    <  1:1472292/91‑1 (MQ=255)

        tgaggTCAACAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCatat                                                                                    <  1:3488093/91‑1 (MQ=255)

         gatgTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATAtt                                                                                   <  1:942160/91‑1 (MQ=255)

          atgTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTa                                                                                  <  2:1970179/91‑1 (MQ=255)

           tgTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCata                                                                                     >  1:3761298/1‑87 (MQ=255)

           tgTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTaa                                                                                 <  1:3254116/91‑1 (MQ=255)

           tgTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTaa                                                                                 >  1:868203/1‑91 (MQ=255)

             tCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAaat                                                                               >  2:1181114/1‑91 (MQ=255)

             tCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAaat                                                                               <  2:2046304/91‑1 (MQ=255)

             tCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAaat                                                                               <  2:2302180/91‑1 (MQ=255)

              cAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAaata                                                                              >  2:3167795/1‑91 (MQ=255)

               aaaaaGTTGTTCGTTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAaataa                                                                             >  1:2998607/1‑91 (MQ=255)

               aaaaaGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAaataa                                                                             <  1:1985337/91‑1 (MQ=255)

                aaaaGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAaataat                                                                            >  2:188602/1‑91 (MQ=255)

                  aaGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGc                                                                          <  2:2810487/91‑1 (MQ=255)

                  aaGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGc                                                                          <  2:1781186/91‑1 (MQ=255)

                  aaGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGc                                                                          >  1:3074025/1‑91 (MQ=255)

                    gttgttCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCACTCGTTGATTGGCTTTGATGCATATTAAATAATGCaa                                                                        >  2:3829296/1‑91 (MQ=255)

                        ttcattcaTACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAatata                                                                    >  2:3670759/1‑91 (MQ=255)

                         tcattcatACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAatatat                                                                   <  1:1229881/91‑1 (MQ=255)

                          cattcatACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAatatata                                                                  >  1:2628198/1‑91 (MQ=255)

                          cattcatACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAatatata                                                                  <  2:1307419/91‑1 (MQ=255)

                            ttcatACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATAtt                                                                >  2:1201956/1‑91 (MQ=255)

                            ttcatACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATAtt                                                                <  2:2630888/91‑1 (MQ=255)

                              catacataAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATtaa                                                              <  2:1040351/91‑1 (MQ=255)

                              catacataAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATtaa                                                              <  1:415233/91‑1 (MQ=255)

                                tacataAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATtaata                                                            >  2:1938103/1‑91 (MQ=255)

                                tacataAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATtaata                                                            >  2:3649830/1‑91 (MQ=255)

                                 acataAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATtaataa                                                           >  1:2523396/1‑91 (MQ=255)

                                  cataAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATaaa                                                          <  1:990609/91‑1 (MQ=255)

                                   ataaataaAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAAt                                                         <  1:2952351/91‑1 (MQ=255)

                                    taaataaaACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATg                                                        >  2:1507796/1‑91 (MQ=255)

                                    taaataaaACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATg                                                        <  2:2717663/91‑1 (MQ=255)

                                    taaataaaACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAAAGCAATATATATTAATAAATg                                                        >  2:301794/1‑91 (MQ=255)

                                     aaataaaACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATgt                                                       <  2:3237434/91‑1 (MQ=255)

                                        taaaACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATgttag                                                    >  1:2464117/1‑91 (MQ=255)

                                          AAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATgttagtt                                                  <  1:1544774‑M1/91‑1 (MQ=255)

                                             ccAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTtata                                               <  2:844517/91‑1 (MQ=255)

                                              caatcaacgattgattttcaccaactcaattgttgattggttttGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAg                                              >  1:654713‑M2/45‑91 (MQ=255)

                                              cAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAg                                              >  1:877510/1‑91 (MQ=255)

                                               aatcaacgattgattttcaccaactcaattgttgattggttttGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGt                                             >  1:3366832‑M2/44‑91 (MQ=255)

                                               aaTCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGt                                             <  2:2786014/91‑1 (MQ=255)

                                                aTCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGta                                            >  1:1430462/1‑91 (MQ=255)

                                                aTCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGta                                            >  1:52059/1‑91 (MQ=255)

                                                aTCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGta                                            >  2:2711034/1‑91 (MQ=255)

                                                aTCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGta                                            >  1:722001/1‑91 (MQ=255)

                                                 tcaacgattgattttcaccaacccaattgttgattggttttGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGtat                                           >  1:2370592‑M2/42‑91 (MQ=255)

                                                 tCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGtat                                           <  1:3145814/91‑1 (MQ=255)

                                                   aacgattgattttcaccaactcaattgttgattggttttGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTatat                                         >  1:2703301‑M2/40‑91 (MQ=255)

                                                   aacgattgattttcaccaactcaattgttgattggctttGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTatat                                         >  2:2120535‑M2/40‑91 (MQ=255)

                                                   aacaaTTGTGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTatat                                         >  2:2222265/1‑91 (MQ=255)

                                                   aacaaTTGTGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTatat                                         >  2:2222475/1‑91 (MQ=255)

                                                    acgattgattttcaccaactcaattgttgattggttttGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATAtt                                        >  2:52713‑M2/39‑91 (MQ=255)

                                                    acaaTTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATAtt                                        >  2:1830110/1‑91 (MQ=255)

                                                    acaaTTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATAtt                                        >  2:3461284/1‑91 (MQ=255)

                                                      gattgattttcaccaactcaattgttgattggctttGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATAtttt                                      >  2:489991‑M2/37‑91 (MQ=255)

                                                        ttGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGt                                    <  2:1006584/91‑1 (MQ=255)

                                                          gAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCa                                  <  2:3552743/91‑1 (MQ=255)

                                                            gTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAgg                                >  2:1623630/1‑91 (MQ=255)

                                                            gTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAgg                                <  1:1889808/91‑1 (MQ=255)

                                                            gTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAgg                                >  1:2464734/1‑91 (MQ=255)

                                                               ggTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGAtt                             >  1:225041/1‑91 (MQ=255)

                                                                gTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATAAATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGATTg                            >  2:2149501/1‑91 (MQ=255)

                                                                 tGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGATTgg                           <  1:3170148/91‑1 (MQ=255)

                                                                   aaaaTCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGATTGGGt                         >  2:3205147/1‑91 (MQ=255)

                                                                     aatcaatcGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGATTGGGTGa                       >  1:2109578/1‑91 (MQ=255)

                                                                     aatcaatcGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGATTGGGTGa                       <  1:1684638/91‑1 (MQ=255)

                                                                        caatcGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGATTGGGTGAATg                    <  1:2849046/91‑1 (MQ=255)

                                                                          atcGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGATTGGGTGAATGTc                  >  1:3563404/1‑91 (MQ=255)

                                                                          atcGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGATTGGGTGAATGTc                  >  2:2438977/1‑91 (MQ=255)

                                                                           tcGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGATTGGGTGAATGTCt                 <  1:2822669/91‑1 (MQ=255)

                                                                           tcGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGATTGGGTGAATGTCt                 <  1:1527752/91‑1 (MQ=255)

                                                                           tcGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGATTGGGTGAATGTCt                 <  1:2194381/91‑1 (MQ=255)

                                                                           tcGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGATTGGGTGAATGTCt                 >  2:2833369/1‑91 (MQ=255)

                                                                            cGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGATTGGGTGAATGTCTa                <  2:3722674/91‑1 (MQ=255)

                                                                            cGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGATTGGGTGAATGTCTa                >  1:1173774/1‑91 (MQ=255)

                                                                             aacgATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGATTGGGTGAATGTCTaa               >  1:636432/4‑91 (MQ=255)

                                                                              ttGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGATTGGGTGAATGTCTAAg              >  1:176599/1‑91 (MQ=255)

                                                                              ttGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGATTGGGTGAATGTCTAAg              >  2:700034/1‑91 (MQ=255)

                                                                               tGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGATTGGGTGAATGTCTAAGt             <  1:3718830/91‑1 (MQ=255)

                                                                                 aTTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGATTGGGTGAATGTCTAAGttt           <  1:3839264/91‑1 (MQ=255)

                                                                                  attgCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGATTGGGTGAATGTCTAAGtttt          >  2:3740369/4‑91 (MQ=255)

                                                                                   tGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGATTGGGTGAATGTCTAAGTTTTa         >  1:2536041/1‑91 (MQ=255)

                                                                                   tGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGATTGGGTGAATGTCTAAGTTTTa         <  2:1138085/91‑1 (MQ=255)

                                                                                   tGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGATTGGGTGAATGTCTAAGTTTTa         <  2:1702300/91‑1 (MQ=255)

                                                                                    ggCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGATTGGGTGAATGTCTAAGTTTTaa        >  1:1817678/1‑91 (MQ=255)

                                                                                     gCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGATTGGGTGAATGTCTAAGTTTTAat       <  2:257158/91‑1 (MQ=255)

                                                                                      cTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGATTGGGTGAATGTCTAAGTTTTAatt      >  2:1831740/1‑91 (MQ=255)

                                                                                      cTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGATTGGGTGAATGTCTAAGTTTTAatt      >  1:3553612/1‑91 (MQ=255)

                                                                                       tttGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGATTGGGTGAATGTCTAAGTTTTAatta     <  1:495254‑M2/88‑1 (MQ=255)

                                                                                          gATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGATTGGGTGAATGTCTAAGTTTTAAttattt  >  1:3176486/1‑91 (MQ=255)

                                                                                          gATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGATTGGGTGAATGTCTAAGTTTTAAttattt  >  1:3176553/1‑91 (MQ=255)

ATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACAATTGAGTTGGTGAAAATCAATCGTTGATTGGCTTTGATGCATATTAAATAATGCAATATATATTAATAAATGTTAGTTATAGTATATTTTGTCAGGATTGGGTGAATGTCTAAGTTTTAATTATTT  >  USA300TCH1516_ALE/1939329‑1939509

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.