BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1963219	180 (0.940)	14 (0.080)	11/152	NT	7.5%	intergenic (‑82/+241)	ydeN/hemY	Putative hydrolase YdeN/Protoporphyrinogen oxidase
*	?	USA300TCH1516_ALE	= 1963263	176 (0.970)	14 (0.080)	11/152	NT	7.5%	intergenic (‑126/+197)	ydeN/hemY	Putative hydrolase YdeN/Protoporphyrinogen oxidase

Only 100 of 230 total aligned reads displayed.

ATTTTTAAAAAAATGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTCACAAAAATAATTCCCGCTGAAAGTATC  >  USA300TCH1516_ALE/1963173‑1963353

 tttttAAAAAAATGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAg                                                                                           >  1:1026637‑M2/1‑90 (MQ=255)

 tttttAAAAAAATGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAg                                                                                           <  1:615068‑M2/91‑2 (MQ=255)

 tttttAAAAAAATGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAg                                                                                           >  2:740311‑M2/1‑90 (MQ=255)

  ttttAAAAAAATGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAgt                                                                                          <  2:521192‑M2/91‑3 (MQ=255)

   tttAAAAAAATGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAgtg                                                                                         >  2:2153023‑M2/1‑88 (MQ=255)

   tttAAAAAAATGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAgtg                                                                                         <  1:3133942‑M2/91‑4 (MQ=255)

    ttAAAAAAATGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAgtgt                                                                                        >  2:1944867‑M2/1‑87 (MQ=255)

    ttAAAAAAATGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAgtgt                                                                                        >  2:2017719‑M2/1‑87 (MQ=255)

      ttaaaaaTGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTAt                                                                                      >  1:1494449/3‑91 (MQ=255)

      aaaaaaaTGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTAt                                                                                      <  2:2389824/91‑1 (MQ=255)

      aaaaaaaTGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTAt                                                                                      <  1:2958295/91‑1 (MQ=255)

       aaaaaaTGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTAtt                                                                                     >  1:3270330/1‑91 (MQ=255)

        aaaaaTGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTg                                                                                    <  2:2716230/91‑1 (MQ=255)

        aaaaaTGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTg                                                                                    <  1:3661043/91‑1 (MQ=255)

         aaaaTGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGt                                                                                   >  1:2710946/1‑91 (MQ=255)

         aaaaTGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGt                                                                                   >  1:3298990/1‑91 (MQ=255)

           aaTGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGtca                                                                                 <  1:728974/91‑1 (MQ=255)

              gACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGtcatca                                                                              >  2:2496250/1‑91 (MQ=255)

               aCTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTACAGTGTATTGTcatcat                                                                             >  2:3716025/1‑91 (MQ=255)

               aCTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTCATATCGCAAAGTGACATTTCTAATTAAAGCGTATTGTcatcat                                                                             >  1:3876160/1‑91 (MQ=255)

                cTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCAtt                                                                            <  1:750911/91‑1 (MQ=255)

                cTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCAtt                                                                            >  1:609054/1‑91 (MQ=255)

                  gATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTc                                                                          <  2:2205329/91‑1 (MQ=255)

                    ttACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCaa                                                                        >  2:326285/1‑91 (MQ=255)

                      aCCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAata                                                                      >  1:3433505/1‑91 (MQ=255)

                         tataATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCa                                                                   >  1:3736365/1‑91 (MQ=255)

                           taATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCAtt                                                                 <  2:2296168/91‑1 (MQ=255)

                           taATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCAtt                                                                 >  2:1470583/1‑91 (MQ=255)

                            aaTTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTc                                                                >  1:2224329/1‑91 (MQ=255)

                             aTTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCa                                                               >  1:1600141/1‑91 (MQ=255)

                                gTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCaaaa                                                            >  2:2434721/1‑91 (MQ=255)

                                gTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCaaaa                                                            >  1:3562123/1‑91 (MQ=255)

                                  aaaataaaaACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAgtgtttttattttacaattataggtaatcagtca                                                          <  1:889169‑M2/91‑35 (MQ=255)

                                   aaataaaaACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACa                                                         <  2:3255114/91‑1 (MQ=255)

                                   aaataaaaACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACa                                                         >  2:2107077/1‑91 (MQ=255)

                                    aataaaaACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAg                                                        >  2:3308881/1‑91 (MQ=255)

                                      taaaaACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCt                                                      >  2:305561/1‑91 (MQ=255)

                                        aaaaCACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAgtgtttttattttacaattataggtaatcagtcatttttt                                                    <  1:2005664‑M2/91‑41 (MQ=255)

                                         aaaCACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAgtgtttttattttacaattataggtaatcagtcattttttt                                                   <  2:3681443‑M2/91‑42 (MQ=255)

                                         aaaCACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTaaa                                                   <  2:541267/91‑1 (MQ=255)

                                          aaCACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCATAAACAGCTAAAc                                                  <  1:2987039/91‑1 (MQ=255)

                                          aaCACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAAc                                                  >  1:1821296/1‑91 (MQ=255)

                                          aaCACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAAc                                                  >  2:652972/1‑91 (MQ=255)

                                          aaCACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAAc                                                  >  1:3084358/1‑91 (MQ=255)

                                          aaCACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAAc                                                  >  2:8652/1‑91 (MQ=255)

                                          aaCACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAAc                                                  >  2:895998/1‑91 (MQ=255)

                                            cacCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCt                                                <  1:3683460/91‑1 (MQ=255)

                                            cacCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCt                                                >  2:1219557/1‑91 (MQ=255)

                                            cacCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCt                                                >  2:1313877/1‑91 (MQ=255)

                                             acCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAgtgtttttattttacaattataggtaatcagtcatttttttaaaa                                               <  1:2838814‑M2/91‑46 (MQ=255)

                                             acCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCtt                                               >  2:834918/1‑91 (MQ=255)

                                               cTTAATTAGAAATGTTATATCGCAAAGTGGCATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTg                                             <  2:1076228/91‑1 (MQ=255)

                                               cTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAACCAGCTAAACCTTTg                                             <  1:1153546/91‑1 (MQ=255)

                                               cTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTg                                             <  1:2327393/91‑1 (MQ=255)

                                               cTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTg                                             <  2:195952/91‑1 (MQ=255)

                                               cTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTg                                             <  2:1985045/91‑1 (MQ=255)

                                               cTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTg                                             >  1:3458504/1‑91 (MQ=255)

                                                  aaTTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGtct                                          >  2:1719596/1‑91 (MQ=255)

                                                  aaTTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGtct                                          >  1:176775/1‑91 (MQ=255)

                                                  aaTTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGtct                                          >  2:3358209/1‑91 (MQ=255)

                                                  aaTTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTCTGtct                                          >  2:3574335/1‑91 (MQ=255)

                                                   aTTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGtctc                                         >  2:1015422/1‑91 (MQ=255)

                                                   aTTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGtctc                                         >  2:3207952/1‑91 (MQ=255)

                                                   aTTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGtctc                                         >  1:2415312/1‑91 (MQ=255)

                                                    ttAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTctct                                        >  1:3003008/1‑91 (MQ=255)

                                                    ttAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTctct                                        <  2:2597824/91‑1 (MQ=255)

                                                     tAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAGgtgttcttattttacaattataggtaatcagtcatttttttaaaaatagaaaa                                       <  2:2985909‑M2/91‑54 (MQ=255)

                                                     tAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCAGCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTg                                       >  2:3419686/1‑91 (MQ=255)

                                                       gAAATGTTATATCGCAAAGTGACATTTCTAATTAAAgtgtttttattttacaattataggtaatcagtcatttttttaaaaatagaaaaga                                     >  1:2523635‑M2/1‑36 (MQ=255)

                                                       gAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCt                                     <  1:1369999/91‑1 (MQ=255)

                                                       gAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCt                                     <  2:3290584/91‑1 (MQ=255)

                                                       gAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCt                                     <  2:185015/91‑1 (MQ=255)

                                                            gTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAAt                                >  2:462329/1‑91 (MQ=255)

                                                            gTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGCCACCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAAt                                >  2:1085392/1‑91 (MQ=255)

                                                             ttATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAAtt                               >  1:3160466/1‑91 (MQ=255)

                                                             ttATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAAtt                               <  2:2692989/91‑1 (MQ=255)

                                                             gtataTCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAAtt                               <  2:1752608/90‑1 (MQ=255)

                                                                tatCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTca                            <  2:211359/91‑1 (MQ=255)

                                                                  tCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTcaca                          >  2:2921834/1‑91 (MQ=255)

                                                                   cGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTACAATAACAATCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTCACaa                         <  2:643271/91‑1 (MQ=255)

                                                                      aaaGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTCACaaaaa                      <  1:1490415/91‑1 (MQ=255)

                                                                       aaGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTCACAAAaat                     <  1:3802487/91‑1 (MQ=255)

                                                                       aaGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTCACAAAaat                     >  2:1072823/1‑91 (MQ=255)

                                                                       aaGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTCACAAAaat                     <  1:1382038/91‑1 (MQ=255)

                                                                        aGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTCACAAAaata                    <  1:317207/91‑1 (MQ=255)

                                                                           gACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTCACAAAAATAAtt                 >  1:1865754/1‑91 (MQ=255)

                                                                             cATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTCACAAAAATAATTcc               >  2:3307574/1‑91 (MQ=255)

                                                                              aTTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTCACAAAAATAATTccc              <  2:2068629/91‑1 (MQ=255)

                                                                                ttCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTCATAAAAATAATTCCCGc            <  1:3308780/91‑1 (MQ=255)

                                                                                ttCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTCACAAAAATAATTCCCGc            <  1:3354974/91‑1 (MQ=255)

                                                                                ttCTAATTAAAGTGTATTGTCATCATTTCAATATCATCCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTCACAAAAATAATTCCCGc            <  1:190195/91‑1 (MQ=255)

                                                                                  cTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTCACAAAAATAATTCCCGCTg          <  1:2084171/91‑1 (MQ=255)

                                                                                  cTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTCACAAAAATAATTCCCGCTg          <  2:3270330/91‑1 (MQ=255)

                                                                                   tAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTCACAAAAATAATTCCCGCTGa         <  1:2432204/91‑1 (MQ=255)

                                                                                   tAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTCACAAAAATAATTCCCGCTGa         >  1:426677/1‑91 (MQ=255)

                                                                                       tAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTCACAAAAATAATTCCCGCTGAAAGt     >  1:3463797/1‑91 (MQ=255)

                                                                                       tAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTCACAAAAATAATTCCCGCTGAAAGt     >  2:796133/1‑91 (MQ=255)

                                                                                       tAAAGTGTATTGTCATCATTGCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTCACAAAAATAATTCCCGCTGAAAGt     <  2:1126680/91‑1 (MQ=255)

                                                                                         aaGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTCACAAAAATAATTCCCGCTGAAAGTAt   <  2:2824697/91‑1 (MQ=255)

                                                                                          aGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTCACAAAAATAATTCCCGCTGAAAGTATc  <  2:407552/91‑1 (MQ=255)

ATTTTTAAAAAAATGACTGATTACCTATAATTGTAAAATAAAAACACCTTAATTAGAAATGTTATATCGCAAAGTGACATTTCTAATTAAAGTGTATTGTCATCATTTCAATATCATTCAAAAACAGCTAAACCTTTGTCTCTGCTTCAATTTCACAAAAATAATTCCCGCTGAAAGTATC  >  USA300TCH1516_ALE/1963173‑1963353

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.