New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 2082368 =165 (0.870)22 (0.130) 12/138 NT 12.4% intergenic (+9/+315) aspC/USA300HOU_RS10520 Aspartate aminotransferase/65 kDa membrane protein
?USA300TCH1516_ALE 2082406 = 170 (1.040)intergenic (+47/+277) aspC/USA300HOU_RS10520 Aspartate aminotransferase/65 kDa membrane protein

Only 100 of 306 total aligned reads displayed.

ATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATA  >  USA300TCH1516_ALE/2082316‑2082496
                                                                                          |                                                                                          
aTGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCACCCAATAATCTGATGAGTATGAATCGGATTATTGGttt                                                                                            <  2:2104632/91‑1 (MQ=255)
aTGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGttt                                                                                            >  2:3744130/1‑91 (MQ=255)
 taaaatatatcttatgatactttgaaagaaggaataattttaaaaataaaaAACCAATAATCTGATGAGTATGACTCGGATTATTGGtttt                                                                                           >  1:1762429‑M1/52‑91 (MQ=255)
 taaaatatatcttatgatactttgaaagaaggaataattttaaaaataaaaAACCAATAATCTGATGAGTATGACTCGGAT‑ATTGGttttt                                                                                          >  2:2839227‑M1/52‑91 (MQ=255)
  aaaatgtatcttatgatactttgaatgaaggaataatttgaaaaataaaaAACGAATAATCTGATGAGTATGACTCGGATTATTGGttttt                                                                                          >  1:3610369‑M1/51‑91 (MQ=255)
   tATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGtttttt                                                                                         <  1:1849986/91‑1 (MQ=255)
      ttGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAGTCTGATGAGTATGACTCGGATTATTGGTtttttatt                                                                                      >  2:3835223/1‑91 (MQ=255)
      ttGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTtttttatt                                                                                      >  2:3637651/1‑91 (MQ=255)
       tGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTtttttattt                                                                                     >  2:677552/1‑91 (MQ=255)
        tatcttatgatactttgaaagaaggaataattttaaaaataaaaAACCAATAATCTGATGAGTATGACTCGGATTATTGGTtttttatttt                                                                                    >  1:673590‑M1/45‑91 (MQ=255)
        gATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTtttttatttt                                                                                    >  1:1989805/1‑91 (MQ=255)
         atcttatgatactttgaaagaaggaataattttaaaaataaaaAACCAATAATCTGATGAGTATGACTCGGATTATTGGTtttttattttt                                                                                   >  2:940428‑M1/44‑91 (MQ=255)
           tCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTaa                                                                                 >  1:3216810/1‑91 (MQ=255)
            cAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTaaa                                                                                <  2:3072139/91‑1 (MQ=255)
            atgttGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTaaa                                                                                <  2:1345378/88‑1 (MQ=255)
              aTTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAat                                                                              >  2:2582156/1‑91 (MQ=255)
               ttGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTATAatt                                                                             >  2:1706350/1‑91 (MQ=255)
                  cTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAattatt                                                                          <  1:2513250/91‑1 (MQ=255)
                    ctttgaaagaaggaataattttaaaaataaaaAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTcc                                                                        >  2:3043146‑M1/33‑91 (MQ=255)
                     aaGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCct                                                                       <  2:1099556/91‑1 (MQ=255)
                       gCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCcttc                                                                     >  2:2909309/1‑91 (MQ=255)
                        cGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGGGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCcttct                                                                    <  1:3080171/91‑1 (MQ=255)
                         gATTGATGACTTGAGATAATTGAGTTCAACCGATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCcttctt                                                                   <  2:3880906/91‑1 (MQ=255)
                         gATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCcttctt                                                                   <  1:2798280/91‑1 (MQ=255)
                           ttGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTc                                                                 >  1:632579/1‑91 (MQ=255)
                             gatgaCTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCaa                                                               <  2:2143642/91‑1 (MQ=255)
                              atgaCTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCaaa                                                              >  2:2267490/1‑91 (MQ=255)
                              atgaCTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCaaa                                                              <  2:2033744/91‑1 (MQ=255)
                               tgaCTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAg                                                             >  2:1966490/1‑91 (MQ=255)
                                gaCTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGt                                                            >  2:3259614/1‑91 (MQ=255)
                                 aCTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTa                                                           <  1:3446696/91‑1 (MQ=255)
                                  cTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTAt                                                          >  2:1987443/1‑91 (MQ=255)
                                  cTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTAt                                                          >  1:704576/1‑91 (MQ=255)
                                   ttAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATc                                                         >  1:1359545/1‑91 (MQ=255)
                                   ttAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATc                                                         >  2:1226182/1‑91 (MQ=255)
                                    tAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCa                                                        >  1:2126628/1‑91 (MQ=255)
                                       gATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAattatt                                                                          <  1:3339295/70‑1 (MQ=255)
                                       gATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAattatt                                                                          >  2:3339295/1‑70 (MQ=255)
                                       gATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATaa                                                     >  2:2516616/1‑91 (MQ=255)
                                        aTAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAg                                                    <  1:780166/91‑1 (MQ=255)
                                          aattaattTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGat                                                  >  1:2146461/1‑91 (MQ=255)
                                          aaaaataaaaaaccaataatccgagtcatactcatcagattattggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGat                                                  >  2:943584‑M2/49‑91 (MQ=255)
                                           attaattTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGata                                                 <  2:1990190/91‑1 (MQ=255)
                                           attaattTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGata                                                 <  2:2314722/91‑1 (MQ=255)
                                            ttaattTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGatat                                                >  1:3200847/1‑91 (MQ=255)
                                            ttaattTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGatat                                                <  1:2712110/91‑1 (MQ=255)
                                            ttaattTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGatat                                                >  1:172260/1‑91 (MQ=255)
                                            ttaattTCAACCAATAATCTGATGAGTATGACTCGGACTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGatat                                                >  1:3260575/1‑91 (MQ=255)
                                            aaataataAACTATTAATTTGATTAGTATTACTTGGATTATTGGTTTTTTATTTTTAAAATTATTCTTTCTTTCAATGTATCATAAGatat                                                >  2:214550‑M1/9‑91 (MQ=255)
                                              aattTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGatatat                                              >  1:2612437/1‑91 (MQ=255)
                                               taaaaaaccaataatccgagtcatactcatcagattattggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATAtt                                             >  1:2963‑M2/44‑91 (MQ=255)
                                               attTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATAtt                                             >  1:3795076/1‑91 (MQ=255)
                                                 ttCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATAtttt                                           <  1:1958259/91‑1 (MQ=255)
                                                 ttCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATAtttt                                           >  1:2336453/1‑91 (MQ=255)
                                                 ttCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATAtttt                                           <  1:2466943/91‑1 (MQ=255)
                                                  tCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTa                                          <  2:755809/91‑1 (MQ=255)
                                                  aaaaccaataatccgagtcatactcatcagattattggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTa                                          >  1:1763071‑M2/41‑91 (MQ=255)
                                                     ACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTc                                       <  1:2313665‑M1/91‑1 (MQ=255)
                                                     ACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTc                                       <  1:2443910‑M1/91‑1 (MQ=255)
                                                      CCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCa                                      >  2:1726807‑M1/1‑91 (MQ=255)
                                                      CCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCa                                      >  2:1892026‑M1/1‑91 (MQ=255)
                                                        AATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGc                                    >  2:1822316‑M1/1‑91 (MQ=255)
                                                         ATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCa                                   >  1:1228889‑M1/1‑91 (MQ=255)
                                                          TAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCaa                                  <  1:952940‑M1/91‑1 (MQ=255)
                                                          TAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCaa                                  >  1:3730595‑M1/1‑91 (MQ=255)
                                                            ATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACt                                <  2:2559293‑M1/91‑1 (MQ=255)
                                                               tgatgaGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGt                             <  1:2651966/91‑1 (MQ=255)
                                                                gatgaGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTc                            <  1:609182/91‑1 (MQ=255)
                                                                 atgaGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCa                           <  1:1695817/91‑1 (MQ=255)
                                                                 atgaGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCa                           >  1:1525333/1‑91 (MQ=255)
                                                                 atgaGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGCATCATAAGATATATTTTATTCAGCAACTTGTCa                           >  2:1560135/1‑91 (MQ=255)
                                                                  tgaGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCaa                          <  1:27674/91‑1 (MQ=255)
                                                                  tgaGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCaa                          >  1:2887829/1‑91 (MQ=255)
                                                                    aGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAac                        <  2:2377324/91‑1 (MQ=255)
                                                                       aTGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACt                     <  2:1444437/91‑1 (MQ=255)
                                                                        tGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCaaa                         >  1:2076299/1‑86 (MQ=255)
                                                                        tGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACta                    >  1:2196870/1‑91 (MQ=255)
                                                                          aCTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACCCtata                  >  2:3567508/1‑91 (MQ=255)
                                                                          aCTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACtata                  >  1:2557382/1‑91 (MQ=255)
                                                                            tCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATAcc                >  1:1304718/1‑91 (MQ=255)
                                                                            tCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATAcc                >  1:2693514/1‑91 (MQ=255)
                                                                               gattattggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTaa             <  2:3812917‑M2/80‑1 (MQ=255)
                                                                                attattggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAAt            <  2:2163211‑M2/81‑1 (MQ=255)
                                                                                 ttattggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAAtt           >  1:848074‑M2/10‑91 (MQ=255)
                                                                                  tattggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTa          >  2:2856583‑M2/9‑91 (MQ=255)
                                                                                  tattggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTa          <  2:872077‑M2/83‑1 (MQ=255)
                                                                                  tattggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTa          <  1:1445393‑M2/83‑1 (MQ=255)
                                                                                  tattggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTa          >  2:3018025‑M2/9‑91 (MQ=255)
                                                                                  tattggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTa          <  2:2775684‑M2/83‑1 (MQ=255)
                                                                                    ttggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTagc        >  1:3637890‑M2/7‑90 (MQ=255)
                                                                                    ttggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGt        >  1:2383594‑M2/7‑91 (MQ=255)
                                                                                    ttggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGt        <  1:1149642‑M2/85‑1 (MQ=255)
                                                                                     tggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGtt       >  1:3533481‑M2/6‑91 (MQ=255)
                                                                                       gttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGtttt     >  1:3857304‑M2/4‑91 (MQ=255)
                                                                                         tTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTtat   <  1:482633‑M2/90‑1 (MQ=255)
                                                                                         tTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTtat   <  1:906077‑M2/90‑1 (MQ=255)
                                                                                         tTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTtat   <  1:106830‑M2/90‑1 (MQ=255)
                                                                                          ttttatttttaGAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTGATTCAGCAAGTTGTCAAACACTATACCTAATTAGTTTtata  <  2:2957896/91‑1 (MQ=255)
                                                                                          ttttatttttaAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTtata  <  2:3499681/91‑1 (MQ=255)
                                                                                          ttttatttttaAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTtata  <  2:568510/91‑1 (MQ=255)
                                                                                          |                                                                                          
ATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATA  >  USA300TCH1516_ALE/2082316‑2082496

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.