BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2150647 =	195 (1.020)	18 (0.110)	13/136	NT	11.1%	intergenic (+310/+57)	agrA/scrK	Accessory gene regulator A/Fructokinase
*	?	USA300TCH1516_ALE	2150691 =	124 (0.770)	18 (0.110)	13/136	NT	11.1%	intergenic (+354/+13)	agrA/scrK	Accessory gene regulator A/Fructokinase

Only 100 of 229 total aligned reads displayed.

ATAAAATGCTATAATTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACTATTGCAGCAAC  >  USA300TCH1516_ALE/2150601‑2150781

ataaaATGCTATAATTTCCTACTCCGTGAATCTTGTTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTta                                                                                            >  2:2939235/1‑91 (MQ=255)

ataaaATGCTATAATTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTta                                                                                            >  2:2938516/1‑91 (MQ=255)

 taaaATGCTATAATTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTtat                                                                                           >  1:906762/1‑91 (MQ=255)

  aaaaTGCTATAATTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTGTCCTACACTGTTTtata                                                                                          <  1:1189008/91‑1 (MQ=255)

    aaTGCTATAATTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATaaa                                                                                        >  1:1051036/1‑91 (MQ=255)

    aaTGCTATAATTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATaaa                                                                                        >  2:1522280/1‑91 (MQ=255)

    aaTGCTATAATTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTACTACACTGTTTTATaaa                                                                                        <  2:944820/91‑1 (MQ=255)

     aTGCTATAATTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAAt                                                                                       >  2:1011350/1‑91 (MQ=255)

      ttacaagaggttgaacaagcattttaaataattcatttataaaacagtgtaggaaacaagttgaatcttgtgctacactgttttaaaaaac                                                                                      <  1:820848‑M2/7‑3 (MQ=255)

      ttacaagaggttgaacaagcattttaaataattcagttatAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATg                                                                                      >  2:851206‑M1/41‑91 (MQ=255)

      tGCTATAATTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATg                                                                                      >  1:3655719/1‑91 (MQ=255)

        cTATAATTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGaa                                                                                    <  1:479888/91‑1 (MQ=255)

         tataATTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAat                                                                                   <  1:1646297/91‑1 (MQ=255)

            aaTTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAattat                                                                                >  1:3199504/1‑91 (MQ=255)

            aaTTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAattat                                                                                >  2:2782729/1‑91 (MQ=255)

             aTTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAattatt                                                                               >  1:429783/1‑91 (MQ=255)

              tttCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTAttt                                                                              <  2:2488784/91‑1 (MQ=255)

              tttCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTAttt                                                                              <  2:1795451/91‑1 (MQ=255)

                tCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTaa                                                                            <  2:752863/91‑1 (MQ=255)

                  cTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTaaaa                                                                          <  2:452164/91‑1 (MQ=255)

                   tACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAAt                                                                         >  1:1518665/1‑91 (MQ=255)

                    aCTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATg                                                                        <  2:646480/91‑1 (MQ=255)

                    aCTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATg                                                                        >  1:869034/1‑91 (MQ=255)

                      tCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCt                                                                      >  2:1930425/1‑91 (MQ=255)

                       ccGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCtt                                                                     >  1:2932005/1‑91 (MQ=255)

                        cGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTg                                                                    <  1:2925690/91‑1 (MQ=255)

                            aaTCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCa                                                                >  2:3265835/1‑91 (MQ=255)

                             ttaaataattcatttataaaacagtgtaggaaacaagttgaatcttgtgctacactgttttTTAAATGAATTATTTAAAATGCTTGTTCaa                                                               >  1:814394‑M2/62‑91 (MQ=255)

                               cTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAAcc                                                             >  2:771550/1‑91 (MQ=255)

                                ttATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACct                                                            <  1:1011350/91‑1 (MQ=255)

                                 tATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACctc                                                           >  1:973465/1‑91 (MQ=255)

                                 tATTTTGTATTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACctc                                                           <  2:2436117/91‑1 (MQ=255)

                                  aTTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACctct                                                          >  2:2548649/1‑91 (MQ=255)

                                  aTTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACctct                                                          <  1:1759419/91‑1 (MQ=255)

                                  aTTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACctct                                                          >  2:804817/1‑91 (MQ=255)

                                  aTTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACctct                                                          <  2:2758719/91‑1 (MQ=255)

                                  aTTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACctct                                                          >  1:2051396/1‑91 (MQ=255)

                                    tttGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTTCACTGTTTTATAAATGAATTATGTAAAATGCTTGTTCAACCTCTTg                                                        <  1:3071054/91‑1 (MQ=255)

                                    tttGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTg                                                        <  1:723258/91‑1 (MQ=255)

                                    tttGTTTTAAAAAACAGTGTAGCACAAGATTCAACGTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTg                                                        <  2:540864/91‑1 (MQ=255)

                                        ttttAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAAt                                                    <  1:3560227/91‑1 (MQ=255)

                                        ttttAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAAt                                                    <  1:3560517/91‑1 (MQ=255)

                                        ttttAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAAt                                                    <  2:3235598/91‑1 (MQ=255)

                                           tataaaacattgtaggaaacaagttgaatcttgtgctacactgttttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGtt                                                 >  1:1947895‑M2/48‑91 (MQ=255)

                                           tAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGtt                                                 <  1:2235390/91‑1 (MQ=255)

                                            aaaaaaCAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTg                                                <  2:2086558/91‑1 (MQ=255)

                                             tAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACTTCTTGTAATGTTgg                                               <  2:1476221‑M1/90‑1 (MQ=255)

                                             aaaaaCAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTgg                                               <  1:3031725/91‑1 (MQ=255)

                                               AAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCa                                             >  1:3750738‑M1/1‑91 (MQ=255)

                                               AAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCa                                             >  2:1162827‑M1/1‑91 (MQ=255)

                                                 ACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCaaa                                           >  2:1837387‑M1/1‑91 (MQ=255)

                                                 ACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCaaa                                           <  2:563324‑M1/91‑1 (MQ=255)

                                                  cagtgtaggaaacaagttgaatcttgtgctacactgttttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAAc                                          >  1:629170‑M2/41‑91 (MQ=255)

                                                  CAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAAc                                          >  1:2782657‑M1/1‑91 (MQ=255)

                                                   agtgtaggaaacaagttgaatcttgtgctacactgttttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACt                                         >  1:3470088‑M2/40‑91 (MQ=255)

                                                   AGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACt                                         >  2:3021326‑M1/1‑91 (MQ=255)

                                                    gtgtaggaaacaagttgaatcttgtgctacactgttttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTa                                        >  1:1914656‑M2/39‑91 (MQ=255)

                                                    GTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTa                                        >  1:3289810‑M1/1‑91 (MQ=255)

                                                     TGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTAt                                       <  1:2582667‑M1/91‑1 (MQ=255)

                                                     TGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTAt                                       <  2:2247280‑M1/91‑1 (MQ=255)

                                                     TGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTAt                                       <  2:3484915‑M1/91‑1 (MQ=255)

                                                       TAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTa                                     <  1:141373‑M1/91‑1 (MQ=255)

                                                        aggaaacaagttgaatcttgtgctacactgttttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTaa                                    >  1:2690136‑M2/35‑91 (MQ=255)

                                                         ggaaacaagttgaatcttgtgctacactgttttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAAt                                   >  2:221551‑M2/34‑91 (MQ=255)

                                                         GCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAAt                                   >  2:3332499‑M1/1‑91 (MQ=255)

                                                           aaacaagttgaatcttgtgctacactgttttTTAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAg                                 >  2:3397858‑M2/32‑91 (MQ=255)

                                                             aaGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCa                               <  1:1127951/91‑1 (MQ=255)

                                                              aGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCAc                              <  2:3800502/91‑1 (MQ=255)

                                                                aTTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCa                            <  2:486514/91‑1 (MQ=255)

                                                                aTTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCa                            <  2:2355314/91‑1 (MQ=255)

                                                                aTTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCa                            <  1:3409830/91‑1 (MQ=255)

                                                                 ttCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCAt                           <  1:94929/91‑1 (MQ=255)

                                                                  tCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATa                          <  1:2368986/91‑1 (MQ=255)

                                                                  tCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATa                          <  1:344630/91‑1 (MQ=255)

                                                                   cAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATAc                         <  1:3330309/91‑1 (MQ=255)

                                                                    aaCTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACt                        <  2:2355724/91‑1 (MQ=255)

                                                                    aaCTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACt                        <  1:1856602/91‑1 (MQ=255)

                                                                    aaCTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACt                        <  2:304152/91‑1 (MQ=255)

                                                                    aaCTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTCGTAATGTTGGCAAACTATTAATAGCACCATACt                        >  1:2568677/1‑91 (MQ=255)

                                                                     aCTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACtt                       >  1:2399049/1‑91 (MQ=255)

                                                                       ttGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCg                     >  1:2834841/1‑91 (MQ=255)

                                                                       ttGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACATCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCg                     <  2:3594628/91‑1 (MQ=255)

                                                                        tGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGt                    <  1:1705061/91‑1 (MQ=255)

                                                                         gTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGtt                   <  2:91835/91‑1 (MQ=255)

                                                                           ttCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGt                 <  1:216358/91‑1 (MQ=255)

                                                                            tCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTc                <  1:3828628/91‑1 (MQ=255)

                                                                            tCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTc                >  1:3562987/1‑91 (MQ=255)

                                                                            tCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTc                >  2:3882165/1‑91 (MQ=255)

                                                                             ccTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCa               >  1:1287770/1‑91 (MQ=255)

                                                                              ctacactgttttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCAc              >  1:1168839‑M2/13‑91 (MQ=255)

                                                                               tactctgttttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACt             >  2:1320427‑M2/12‑91 (MQ=255)

                                                                               tacactgttttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACt             >  2:2171118‑M2/12‑91 (MQ=255)

                                                                                acactgttttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACTa            >  2:145389‑M2/11‑91 (MQ=255)

                                                                                  actgttttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACTAtt          <  1:336087‑M2/83‑1 (MQ=255)

                                                                                   ctgttttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACTATTg         >  2:1871935‑M2/8‑91 (MQ=255)

                                                                                     gttttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACTATTgca       <  1:67084‑M2/86‑1 (MQ=255)

                                                                                      ttttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACTATTgcag      >  2:3588809‑M2/5‑91 (MQ=255)

                                                                                       tttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACTATTgcagc     <  1:2939235‑M2/88‑1 (MQ=255)

                                                                                       tttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACTATTgcagc     >  1:1524454‑M2/4‑91 (MQ=255)

                                                                                        ttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACTATTgcagca    >  1:2287431‑M2/3‑91 (MQ=255)

ATAAAATGCTATAATTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACTATTGCAGCAAC  >  USA300TCH1516_ALE/2150601‑2150781

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.