BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2160376 =	157 (0.820)	13 (0.080)	10/136	NT	8.5%	intergenic (+9/‑352)	yheS/mutS_2	putative ABC transporter ATP‑binding protein YheS/DNA mismatch repair protein MutS
*	?	USA300TCH1516_ALE	2160413 =	148 (0.920)	13 (0.080)	10/136	NT	8.5%	intergenic (+46/‑315)	yheS/mutS_2	putative ABC transporter ATP‑binding protein YheS/DNA mismatch repair protein MutS

Only 100 of 237 total aligned reads displayed.

GAACACGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTAGTTACCCACAAGTAAATT  >  USA300TCH1516_ALE/2160323‑2160502

gctataatatcagcgtttttattgtgaataaaaaaattaaaatttgtaaaaaaATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTAtt                                                                                           >  1:3239778‑M1/54‑91 (MQ=255)

 aaCACGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTAttt                                                                                          >  2:62535/1‑91 (MQ=255)

 aaCACGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTAttt                                                                                          >  1:1228422/1‑91 (MQ=255)

     cGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTAttttttt                                                                                      >  1:1712416/1‑91 (MQ=255)

      gCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTa                                                                                     >  1:294652/1‑91 (MQ=255)

      gCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTa                                                                                     <  1:2964756/91‑1 (MQ=255)

       cTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTAc                                                                                    <  2:2391126/91‑1 (MQ=255)

          tGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACaaa                                                                                 >  1:2240693/1‑91 (MQ=255)

          tGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACaaa                                                                                 >  1:1767243/1‑91 (MQ=255)

           gTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAaat                                                                                >  2:570089/1‑91 (MQ=255)

           agcgtttttattgtgaataaaaaaattaaaatttgtaaaaaaATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAaat                                                                                >  1:1237687‑M1/43‑91 (MQ=255)

            tCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAaatt                                                                               <  2:3076347/91‑1 (MQ=255)

            tCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAaatt                                                                               <  2:3560918/91‑1 (MQ=255)

            tCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAaatt                                                                               <  2:3747229/91‑1 (MQ=255)

             cTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAaattt                                                                              <  2:2742186/91‑1 (MQ=255)

                 tttattgtgaataaaaaaattaaaatttgtaaaaaaATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAaattttaat                                                                          >  1:2002899‑M1/37‑91 (MQ=255)

                 tttattgtgaataaaaaaattaaaatttgtaaaaaaATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAaattttaat                                                                          >  1:2002925‑M1/37‑91 (MQ=255)

                 aTGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAaattttaat                                                                          <  2:2855146/91‑1 (MQ=255)

                 aTGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAaattttaat                                                                          <  2:1748983/91‑1 (MQ=255)

                 aTGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAaattttaat                                                                          <  1:960487/91‑1 (MQ=255)

                   gggAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAaattttaattt                                                                        <  1:194337/91‑1 (MQ=255)

                     gaagaaTTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAAttttt                                                                      >  2:833574/1‑91 (MQ=255)

                      tgtgaataaaaaaattaaaatttgtaaaaaaATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAAtttttt                                                                     >  1:2297218‑M1/32‑91 (MQ=255)

                      aagaaTTACAACAAAATCTATAAAAATATACATAACTCTAACTGTAAAATCTCTATAGTTAGAGTTATTTTTTTACAAATTTTAAtttttt                                                                     <  2:3587327/91‑1 (MQ=255)

                      aagaaTTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAAtttttt                                                                     <  2:2048634/91‑1 (MQ=255)

                      aagaaTTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAAtttttt                                                                     <  2:3588468/91‑1 (MQ=255)

                         aaTTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTAt                                                                  >  1:2585015/1‑91 (MQ=255)

                         aaTTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTAt                                                                  >  1:680307/1‑91 (MQ=255)

                          aTTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTAtt                                                                 >  2:1214852/1‑91 (MQ=255)

                            tACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTca                                                               >  2:162145/1‑91 (MQ=255)

                            tACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTca                                                               >  1:1289508/1‑91 (MQ=255)

                             acaacaCAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATGcac                                                              >  1:3012387/1‑91 (MQ=255)

                               aacaaAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTATAGTTATTGTTTTACAAATTTTAAATTTTTTATTCACaa                                                            <  1:1154612/91‑1 (MQ=255)

                               aacaaAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACaa                                                            >  1:1416190/1‑91 (MQ=255)

                               aacaaAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACaa                                                            >  1:1673573/1‑91 (MQ=255)

                                acaaAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAAt                                                           >  1:423818/1‑91 (MQ=255)

                                acaaAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAAt                                                           <  2:1809750/91‑1 (MQ=255)

                                 aaattaaaatttgtaaaaaaATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATa                                                          >  1:581667‑M1/21‑91 (MQ=255)

                                 aaaaaaCTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATa                                                          <  2:670163/90‑1 (MQ=255)

                                  aaaaaCTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATaa                                                         >  1:1428314/1‑91 (MQ=255)

                                   aaaaCTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATaaa                                                        <  2:2342973/91‑1 (MQ=255)

                                    aaaCTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATaaaa                                                       >  2:2202382/1‑91 (MQ=255)

                                       aaatttgtaaaaaaataactctaactatagcgattttacacttagagttgtTTTTTTACACATTCTAATTTTTTTATTCACAATAAAAACg                                                    >  2:3409483‑M2/52‑91 (MQ=255)

                                        tataAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTCTACAAATTTTAATTTTTTTATTCACAATAAAAACga                                                   >  2:3834538/1‑90 (MQ=255)

                                         ataAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTTACTATAAAAACGCt                                                  >  2:3705276/1‑91 (MQ=255)

                                         ataAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCt                                                  >  2:3268956/1‑91 (MQ=255)

                                          taAAAATATACATAGCTCTAACTGTAAAATCGCTATAGTTAGAGTTATGTTTTTACAGATTTTAAGTTTTTTATTCACAATAAAAACGCTg                                                 <  2:1061706/91‑1 (MQ=255)

                                          taAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTg                                                 <  2:1428314/91‑1 (MQ=255)

                                          taAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTg                                                 <  1:79725/91‑1 (MQ=255)

                                            aaaaTATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGat                                               <  2:1712416/91‑1 (MQ=255)

                                                  taCATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATtata                                         >  1:616005/1‑91 (MQ=255)

                                                  taCATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATtata                                         >  1:1052169/1‑91 (MQ=255)

                                                    cATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACg                                                    >  1:1335232/1‑78 (MQ=255)

                                                    cATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACg                                                    <  2:1335232/78‑1 (MQ=255)

                                                     ATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCt                                      <  1:3813611‑M1/91‑1 (MQ=255)

                                                      TAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACACTAAAAACGCTGATATTATAGCTa                                     <  2:2966348‑M1/91‑1 (MQ=255)

                                                      TAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTa                                     <  2:2729786‑M1/91‑1 (MQ=255)

                                                       aactctaactatagcgattttacagttagagttatTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTAt                                    >  1:1829866‑M2/36‑91 (MQ=255)

                                                          TCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCca                                 >  1:1097949‑M1/1‑91 (MQ=255)

                                                            TAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCcaca                               <  2:3346665‑M1/91‑1 (MQ=255)

                                                            TAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCcaca                               >  1:3828737‑M1/1‑91 (MQ=255)

                                                            TAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCcaca                               >  2:3251946‑M1/1‑91 (MQ=255)

                                                            TAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCcaca                               >  1:267347‑M1/1‑91 (MQ=255)

                                                             aactatagcgattttacagttagagttatTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAg                              >  2:3312767‑M2/30‑91 (MQ=255)

                                                             AACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAg                              <  1:3745016‑M1/91‑1 (MQ=255)

                                                             AACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAg                              <  1:2174759‑M1/91‑1 (MQ=255)

                                                               CTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGAc                            >  1:114466‑M1/1‑91 (MQ=255)

                                                                TGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACt                           <  1:1582816‑M1/91‑1 (MQ=255)

                                                                TGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACt                           <  1:701620‑M1/91‑1 (MQ=255)

                                                                  tagcgattttacagttagagttatTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTa                         >  1:2713175‑M2/25‑91 (MQ=255)

                                                                   aaaaTCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTTATATTATAGCTATCCACAGACTTAt                        >  1:3612891/1‑91 (MQ=255)

                                                                   aaaaTCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTAt                        <  2:3282247/91‑1 (MQ=255)

                                                                   aaaaTCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTAt                        <  2:3048150/91‑1 (MQ=255)

                                                                    aaaTCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATc                       <  1:3120529/91‑1 (MQ=255)

                                                                    aaaTCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATc                       <  2:165805/91‑1 (MQ=255)

                                                                    aaaTCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATc                       >  1:2635952/1‑91 (MQ=255)

                                                                     aaTCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATcc                      >  2:1125252/1‑91 (MQ=255)

                                                                       tCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTa                    <  2:1857196/91‑1 (MQ=255)

                                                                       tCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTa                    >  2:2484279/1‑91 (MQ=255)

                                                                       tCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTa                    >  2:2483746/1‑91 (MQ=255)

                                                                        cGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTAg                   <  1:3422847/91‑1 (MQ=255)

                                                                        cGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTAg                   >  1:929327/1‑91 (MQ=255)

                                                                         gCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTAGt                  <  2:1915375/91‑1 (MQ=255)

                                                                         gCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTAGt                  >  2:462450/1‑91 (MQ=255)

                                                                         gCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTAGt                  >  1:3552200/1‑91 (MQ=255)

                                                                           tataGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTAGTTa                >  2:3498613/1‑91 (MQ=255)

                                                                           tataGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTAGTTa                >  1:1833444/1‑91 (MQ=255)

                                                                           tataGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTAGTTa                >  1:2021691/1‑91 (MQ=255)

                                                                               gttagagttatTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTAGTTACCca            <  1:1664933‑M2/80‑1 (MQ=255)

                                                                               gttagagttatTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTAGTTACCca            <  2:401402‑M2/80‑1 (MQ=255)

                                                                               gttagagttatTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTAGTTACCca            >  2:1888967‑M2/12‑91 (MQ=255)

                                                                               gttagagttatTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTAGTTACCca            >  2:1927623‑M2/12‑91 (MQ=255)

                                                                               gttagagttatTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTAGTTACCca            >  1:1054429‑M2/12‑91 (MQ=255)

                                                                               gttagagttatTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTAGTTACCca            >  1:2340233‑M2/12‑91 (MQ=255)

                                                                               gttagagttatTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTAGTTACCca            <  2:729075‑M2/80‑1 (MQ=255)

                                                                                ttagagttatTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTAGTTACCcac           <  1:3508177‑M2/81‑1 (MQ=255)

                                                                                  agagttatTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTAGTTACCCACaa         <  2:1582816‑M2/83‑1 (MQ=255)

                                                                                   gagttatTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTAGTTACCCACAAg        >  1:493324‑M2/8‑91 (MQ=255)

                                                                                     gttatTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTAGTTACCCACAAGTa      <  2:1304827‑M2/86‑1 (MQ=255)

                                                                                         tTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTAGTTACCCACAAGTAAAtt  <  2:3419446‑M2/90‑1 (MQ=255)

GAACACGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTAGTTACCCACAAGTAAATT  >  USA300TCH1516_ALE/2160323‑2160502

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.