| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2377221 = | 166 (0.870) | 30 (0.180) | 14/142 | NT | 18.1% | intergenic (+124/‑57) | USA300HOU_RS12205/glcU_2 | hypothetical protein/putative glucose uptake protein GlcU |
| ? | USA300TCH1516_ALE | 2377253 = | 124 (0.730) | intergenic (+156/‑25) | USA300HOU_RS12205/glcU_2 | hypothetical protein/putative glucose uptake protein GlcU | |||||
Only 100 of 242 total aligned reads displayed.
ATATTGAAAATTATAAGTAGTTGTTTTTTACTATTAGGGCAGAATGCTTTACAATAACATGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTGCTTTATTCTGGGGAAGTGTCGTTCTTATT > USA300TCH1516_ALE/2377163‑2377343 | taaaagtgcgattaagaaatcaagaaattgcaagactactcactctcctatactatttATGCAAGTGTCAATTAAGGGGAGCACTTGCATa > 1:1587394‑M1/59‑91 (MQ=255) tatTGAAAATTATAAGTAGTTGTTTTTTACTATTAGGGCAGAATGCTTTACAATAACATGCAAGTGTCAATTAAGGGGAGCACTTGCATaa < 2:55292/91‑1 (MQ=255) aaaagtgcgattaagaaatcaagaaattgcaagactactcactctcctatactatttATGCAAGTGTCAATTAAGGGGAGCACTTGCATaa > 2:2022026‑M1/58‑91 (MQ=255) tGAAAATTATAAGTAGTTGTTTTTTACTATTAGGGCAGAATGCTTTACAATAACATGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATa < 2:1257456/91‑1 (MQ=255) gAAAATTATAAGTAGTTGTTTTTTACTATTAGGGCAGAATGCTTTACAATAACATGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAg > 1:2039625/1‑91 (MQ=255) gAAAATTATAAGTAGTTGTTTTTTACTATTAGGGCAGAATGCTTTACAATAACATGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAg > 1:1239217/1‑91 (MQ=255) gAAAATTATAAGTAGTTGTTTTTTACTATTAGGGCAGAATGCTTTACAATAACATGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAg > 1:1468621/1‑91 (MQ=255) cgattaagaaatcaagaaattgcaagactactcactctcctatactatttATGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAGtat < 2:1931274‑M1/41‑1 (MQ=255) aaTTATAAGTAGTTGTTTTTTTTTATTATTGCAGAATGCTTTACAATAACATGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAGcat > 2:2416076/1‑91 (MQ=255) aTTATAAGTAGTTGTTTTTTACTATTAGGGCAGAATGCTTTACAATAACATGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAGtata < 2:1422932/91‑1 (MQ=255) attaagaaatcaagaaattgcaagactactcacgctcctatactatttATGCAAGTGTCAATTATGGGGAGCACTTGCATAAATAGTATAg > 2:2206830‑M1/49‑91 (MQ=255) tataAGTAGTTGTTTTTTACTATTAGGGCAGAATGCTTTACAATAACATGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAgg > 1:3161275/1‑91 (MQ=255) ataAGTAGTTGTTTTTTACTATTAGGGCAGAATGCTTTACAATAACATGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGga > 2:1680760/1‑91 (MQ=255) aaGTAGTTGTTTTTTACTATTAGGGCAGAATGCTTTACAATAACATGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGgaga < 1:1505146/91‑1 (MQ=255) agtagtTGTTTTTTACTATTAGGGCAGAATGCTTTACAATAACATGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGagag > 2:778270/1‑91 (MQ=255) agtagtTGTTTTTTACTATTAGGGCAGAATGCTTTACAATAACATGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGagag > 1:2200187/1‑91 (MQ=255) gtagtTGTTTTTTACTATTAGGGCAGAATGCTTTACAATAACATGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGAgagt > 2:2604491/1‑91 (MQ=255) gtagtTGTTTTTTACTATTAGGGCAGAATGCTTTACAATAACATGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGAgagt < 1:579489/91‑1 (MQ=255) tagtTGTTTTTTACTATTAGGGCAGAATGCTTTACAATAACATGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGAgagtg < 1:1149377/91‑1 (MQ=255) ttttACTATTAGGGCAGAATGCTTTACAATAACATGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCt > 1:914837/1‑91 (MQ=255) ttACTATTAGGGCAGAATGCTTTACAATAACATGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTg < 1:173532/91‑1 (MQ=255) tACTATTAGGGCAGAATGCTTTACAATAACATGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGc > 2:463447/1‑91 (MQ=255) tACTATTAGGGCAGAATGCTTTACAATAACATGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGc > 2:3026284/1‑91 (MQ=255) aCTATTAGGGCAGAATGCTTTACAATAACATGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCa > 1:1939074/1‑91 (MQ=255) aCTATTAGGGCAGAATGCTTTACAATAACATGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCa < 2:1514848/91‑1 (MQ=255) aCTATTAGGGCAGAATGCTTTACAATAACATGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCa < 2:1596619/91‑1 (MQ=255) cTATTAGGGCAGAATGCTTTACAATAACGTGCAAGTGTCAAGTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCaa < 2:1008127/91‑1 (MQ=255) tATTAGGGCAGAATGCTTTACAATAACATGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAAt > 1:665400/1‑91 (MQ=255) aTTAGTGCAGAATGCTTTACAATAACATGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAAtt > 2:1498791/1‑91 (MQ=255) aTTAGGGCAGAATGCTTTACAATAACATGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAAtt > 1:183484/1‑91 (MQ=255) ttAGGGCAGAATGCTTTACAATAACATGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAAttt < 1:2842916/91‑1 (MQ=255) ttAGGGCAGAATGCTTTACAATAACATGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAAttt < 2:422146/91‑1 (MQ=255) tAGGGCAGAATGCTTTACAATAACATGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTc < 2:3184234/91‑1 (MQ=255) tAGGGCAGAATGATTTACAATAACATGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTc > 1:2978260/1‑91 (MQ=255) ggCAGAATGCTTTACAATAACATGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTg > 1:2897781/1‑91 (MQ=255) gCTTTACAATAACATGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTa > 2:1800290/1‑91 (MQ=255) gCTTTACAATAACATGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTa > 2:3761361/1‑91 (MQ=255) gCTTTACAATAACATGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTa > 1:989866/1‑91 (MQ=255) cTTTACAATAACATGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTaa > 1:3258402/1‑91 (MQ=255) cTTTACAATAACATGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTaa > 1:2540435/1‑91 (MQ=255) cTTTACAATAACATGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCGTGATTTCTTaa > 1:3520212/1‑91 (MQ=255) tttACAATAACATGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAAt > 1:585568/1‑91 (MQ=255) ttACAATAACATGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATc > 1:2408314/1‑91 (MQ=255) aTAACATGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACt < 2:1707021/91‑1 (MQ=255) tAACATGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACtt < 2:2861669/91‑1 (MQ=255) aCATGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACtttt > 2:2033188/1‑91 (MQ=255) aCATGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACtttt > 1:222457/1‑91 (MQ=255) tatgcaagtgctccccttaattgacacttgcatAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTa > 1:1587481‑M2/34‑91 (MQ=255) tatgcaagtgctccccttaattgacacttgcatAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTa > 1:1587493‑M2/34‑91 (MQ=255) cATGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTa > 1:1089430/1‑91 (MQ=255) cATGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTa < 2:2994600/91‑1 (MQ=255) ATGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTAc > 1:564532‑M1/1‑91 (MQ=255) TGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTAcc < 2:2586705‑M1/91‑1 (MQ=255) GCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTACCt < 2:616845‑M1/91‑1 (MQ=255) caagtgctccccttaattgacacttgcatAAATAGTATAGGAGAGTGAGTAGTCTTGCACTTTCTTGATTTCTTAATCGCACTTTTACCTg > 1:875516‑M2/30‑91 (MQ=255) caagtgctccccttaattgacacttgcatAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTg > 1:3415230‑M2/30‑91 (MQ=255) CAAGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTg < 2:2759504‑M1/91‑1 (MQ=255) CAAGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTg > 1:673555‑M1/1‑91 (MQ=255) aagtgctccccttaattgacacttgcatAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTGc > 1:2071403‑M2/29‑91 (MQ=255) AAGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTGc < 2:2160944‑M1/91‑1 (MQ=255) AAGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTGc > 1:3583451‑M1/1‑91 (MQ=255) agtgctccccttaattgacacttgcatAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTGCt > 1:3341041‑M2/28‑91 (MQ=255) AGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTGCt < 1:1342874‑M1/91‑1 (MQ=255) AGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTGCt < 2:6978‑M1/91‑1 (MQ=255) AGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTGCt > 2:1215583‑M1/1‑91 (MQ=255) GTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTGCtt > 2:2391725‑M1/1‑91 (MQ=255) GTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTGCtt < 1:3634701‑M1/91‑1 (MQ=255) gctccccttaattgacacttgcatAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTGCTTTa > 1:3833668‑M2/25‑91 (MQ=255) tngaTTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTANTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTGCTTTAt < 2:912869/88‑1 (MQ=255) tccccttaattgacacttgcatAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTGCTTTAtt > 2:114837‑M2/23‑91 (MQ=255) tccccttaattgacacttgcatAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTGCTTTAtt > 2:124604‑M2/23‑91 (MQ=255) cAATTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTGCTTTAtt > 2:1953246/1‑91 (MQ=255) aaTTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTGCTTTATTc > 2:3455883/1‑91 (MQ=255) aTTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTGCTTTATTCt > 1:3818527/1‑91 (MQ=255) ttAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCAc > 1:3117796/1‑72 (MQ=255) ggggAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTGCTTTATTCTGGGGa > 2:1422985/1‑91 (MQ=255) gggAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTGCTTTATTCTGGGGaa > 1:2138673/1‑91 (MQ=255) gggAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTGCTTTATTCTGGGGaa > 2:529972/1‑91 (MQ=255) gggAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTGCTTTATTCTGGGGaa < 2:3515162/91‑1 (MQ=255) ggAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTGCTTTATTCTGGGGAAg < 2:2683664/91‑1 (MQ=255) gAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTGCTTTATTCTGGGGAAgt > 2:2243060/1‑91 (MQ=255) gAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTGCTTTATTCTGGGGAAgt > 2:2242765/1‑91 (MQ=255) gAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTGCTTTATTCTGGGGAAgt < 1:2697205/91‑1 (MQ=255) gAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTGCTTTATTCTGGGGAAgt < 1:3195060/91‑1 (MQ=255) aGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTGCTTTATTCTGGGGAAgtg < 2:1053668/91‑1 (MQ=255) gCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTGCTTTATTCTGGGGAAgtgt < 1:1869195/91‑1 (MQ=255) acttgcatAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTGCTTTATTCTGGGGAAGTGTCg < 1:2656256‑M2/83‑1 (MQ=255) acttgcatAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTGCTTTATTCTGGGGAAGTGTCg < 1:529972‑M2/83‑1 (MQ=255) ttgcatAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTGCTTTATTCTGGGGAAGTGTCGtt < 2:348078‑M2/85‑1 (MQ=255) ttgcatAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTGCTTTATTCTGGGGAAGTGTCGtt > 1:379688‑M2/7‑91 (MQ=255) ttgcatAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTGCTTTATTCTGGGGAAGTGTCGtt < 2:3563465‑M2/85‑1 (MQ=255) gcatAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTGCTTTATTCTGGGGAAGTGTCGTTCt > 2:219746‑M2/5‑91 (MQ=255) gcatAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTGCTTTATTCTGGGGAAGTGTCGTTCt < 1:1173574‑M2/87‑1 (MQ=255) catAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTGCTTTATTCTGGGGAAGTGTCGTTCtt > 2:2118411‑M2/4‑91 (MQ=255) catAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTGCTTTATTCTGGGGAAGTGTCGTTCtt > 1:402118‑M2/4‑91 (MQ=255) catAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTGCTTTATTCTGGGGAAGTGTCGTTCtt > 1:2445357‑M2/4‑91 (MQ=255) catAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTGCTTTATTCTGGGGAAGTGTCGTTCtt < 2:2296018‑M2/88‑1 (MQ=255) atAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTGCTTTATTCTGGGGAAGTGTCGTTCTTa < 1:1779528‑M2/89‑1 (MQ=255) tAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTGCTTTATTCTGGGGAAGTGTCGTTCTTAt > 1:2353743‑M2/2‑91 (MQ=255) aaaTAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTGCTTTATTCTGGGGAAGTGTCGTTCttatt < 1:834957/91‑1 (MQ=255) | ATATTGAAAATTATAAGTAGTTGTTTTTTACTATTAGGGCAGAATGCTTTACAATAACATGCAAGTGTCAATTAAGGGGAGCACTTGCATAAATAGTATAGGAGAGTGAGTAGTCTTGCAATTTCTTGATTTCTTAATCGCACTTTTACCTGCTTTATTCTGGGGAAGTGTCGTTCTTATT > USA300TCH1516_ALE/2377163‑2377343 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |