BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2622931	177 (0.930)	14 (0.080)	10/142	NT	8.1%	intergenic (‑261/+123)	USA300HOU_RS13520/USA300TCH1516_02501	hypothetical protein/Putative surface protein
*	?	USA300TCH1516_ALE	= 2622960	162 (0.960)	14 (0.080)	10/142	NT	8.1%	intergenic (‑290/+94)	USA300HOU_RS13520/USA300TCH1516_02501	hypothetical protein/Putative surface protein

Only 100 of 213 total aligned reads displayed.

ATGATTATATTAAATATGAAAATATTATCAAAAAAATCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTA‑AATATAGTGAATGCAAATCAACTATTATTTAAATTATGAATT  >  USA300TCH1516_ALE/2622870‑2623050

aTGATTATATTAAATATGAAAATATTATCAAAAAAATCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACtttt                                                                                             <  1:2542678/91‑1 (MQ=255)

 tGATTATATTAAATATGAAAATATTATCAAAAAAATCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTg                                                                                            <  1:2268773‑M2/91‑2 (MQ=255)

 tGATTATATTAAATATGAAAATATTATCAAAAAAATCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTg                                                                                            <  2:481932‑M2/91‑2 (MQ=255)

 tGATTATATTAAATATGAAAATATTATCAAAAAAATCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTg                                                                                            <  2:2287474‑M2/91‑2 (MQ=255)

 tGATTATATTAAATATGAAAATATTATCAAAAAAATCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTg                                                                                            <  2:683786‑M2/91‑2 (MQ=255)

  aatTATATTAAATATGAAAATATTATCAAAAAAATCAAAAAAAAAAAAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTgg                                                                                           >  2:1403875‑M2/2‑89 (MQ=255)

   aTTATATTAAATATGAAAATATTATCAAAAAAATCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTggg                                                                                          <  2:1106996‑M2/91‑4 (MQ=255)

    ttATATTAAATATGAAAATATTATCAAAAAAATCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTgggg                                                                                         <  1:2038605‑M2/91‑5 (MQ=255)

      atatTAAATATGAAAATATTATCAAAAAAATCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTggggtg                                                                                       <  2:1378993‑M2/91‑7 (MQ=255)

      atatTAAATATGAAAATATTATCAAAAAAATCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTggggtg                                                                                       <  2:3752471‑M2/91‑7 (MQ=255)

      atatTAAATATGAAAATATTATCAAAAAAATCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTggggtg                                                                                       <  2:2292058‑M2/91‑7 (MQ=255)

         ttAAATATGAAAATATTATCAAAAAAATCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTggggtgtat                                                                                    >  2:3661799‑M2/1‑82 (MQ=255)

         ttAAATATGAAAATATTATCAAAAAAATCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTggggtgtat                                                                                    >  1:3219621‑M2/1‑82 (MQ=255)

           aaaTATGAAAATATTATCAAAAAAATCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTatat                                                                                  <  2:1855951/91‑1 (MQ=255)

           aaaTATGAAAATATTATCAAAAAAATCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTatat                                                                                  <  2:1303912/91‑1 (MQ=255)

            aaTATGAAAATATTATCAAAAAAATCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATc                                                                                 >  1:2452834/1‑91 (MQ=255)

             atatGAAAATATTATCAAAAAAATCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCa                                                                                >  1:1623756/1‑91 (MQ=255)

                tGAAAATATTATCAAAAAAATCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATtc                                                                             >  1:2183932/1‑91 (MQ=255)

                  aaaaTATTATCAAAAAAATCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATtctc                                                                           <  2:2629139/91‑1 (MQ=255)

                  aaaaTATTATCAAAAAAATCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATtctc                                                                           <  2:2855219/91‑1 (MQ=255)

                    aaTATTATCAAAAAAATCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCtcat                                                                         <  1:205169/91‑1 (MQ=255)

                     atatTATCAAAAAAATCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCtcatc                                                                        >  2:2795485/1‑91 (MQ=255)

                      tattatCAAAAAAATCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCtcatca                                                                       >  1:3792822/1‑91 (MQ=255)

                        ttatCAAAAAAATCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCata                                                                     >  2:3248846/1‑91 (MQ=255)

                        ttatCAAAAAAATCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCata                                                                     <  1:519748/91‑1 (MQ=255)

                        ttatCAAAAAAATCAAATTTAT‑ACAAAAATACACCCCTTCAAGTTAGGTCTTTCAATCAAACTTTTGGGGTGTATATCATTCTCATCatat                                                                    >  2:1554553/1‑91 (MQ=255)

                          atCAAAAAAATCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATAtt                                                                   >  2:2992288/1‑91 (MQ=255)

                          atCAAAAAAATCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATAtt                                                                   >  1:3545722/1‑91 (MQ=255)

                          atCAAAAAAATCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATAtt                                                                   >  1:1097577/1‑91 (MQ=255)

                            cAAAAAAATCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCt                                                                 <  1:816531/91‑1 (MQ=255)

                             aaaaaaaTCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTa                                                                <  2:723156/91‑1 (MQ=255)

                              aaaaaaTCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAg                                                               <  2:2083711/91‑1 (MQ=255)

                               aaaaaTCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAgg                                                              <  1:2045968/91‑1 (MQ=255)

                                aaaaTCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGgt                                                             <  1:2431869/91‑1 (MQ=255)

                                aaaaTCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGgt                                                             <  1:3453282/91‑1 (MQ=255)

                                  aaTCAAATTTATAACAACAATACACCCCTTAATGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGgttg                                                           <  1:3326011/91‑1 (MQ=255)

                                    tCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGgttgtt                                                         >  1:1331259/1‑91 (MQ=255)

                                    tCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGgttgtt                                                         <  1:479429/91‑1 (MQ=255)

                                      aaaTTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAg                                                               >  2:3486352/1‑83 (MQ=255)

                                        aTTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTa                                                     >  1:1377199/1‑91 (MQ=255)

                                        aTTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGCTTGTTGTTa                                                     >  1:3485960/1‑91 (MQ=255)

                                         tttATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTaa                                                    <  1:1185158/91‑1 (MQ=255)

                                         tttATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTaa                                                    <  2:1938955/91‑1 (MQ=255)

                                          ttATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAAc                                                   <  1:1373794/91‑1 (MQ=255)

                                            ataACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACaa                                                 <  1:1867033/91‑1 (MQ=255)

                                             taACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACaaa                                                >  2:3401243/1‑91 (MQ=255)

                                             taACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACaaa                                                >  1:1061265/1‑91 (MQ=255)

                                              aaCAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAAc                                               <  1:263090/91‑1 (MQ=255)

                                               aCAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACt                                              <  1:3366409/91‑1 (MQ=255)

                                               aCAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACt                                              >  1:506607/1‑91 (MQ=255)

                                               aCAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACt                                              <  2:3029251/91‑1 (MQ=255)

                                                 aaaaaTACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTa‑a                                           <  1:2133556/91‑1 (MQ=255)

                                                  aaaaTACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTa‑aa                                          >  1:2001563/1‑91 (MQ=255)

                                                  aaaaTACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTa‑aa                                          >  2:3074830/1‑91 (MQ=255)

                                                  aaaaTACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTa‑aa                                          >  2:1464674/1‑91 (MQ=255)

                                                   aaaTACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTA‑Aat                                         <  2:624734/91‑1 (MQ=255)

                                                    aaTACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTA‑Aata                                        <  2:3721534/91‑1 (MQ=255)

                                                     aTACACCCCTTAAAGTTAGGTCTTTCAATCCAGCTTTTGGGGTGTATATCATTCTCATCATATT‑TAGTTTGTTAAAAACAACCTAGAatat                                       <  2:2473026/91‑1 (MQ=21)

                                                      tACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTggggtgtatttttgttataaatttgatttttttgataatattttcatatttaat                                       <  1:2179062‑M2/91‑55 (MQ=255)

                                                       acacCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTggggtgtatttttgttataaatttgatttttttgataatattttcatatttaata                                      <  2:677998‑M2/91‑56 (MQ=255)

                                                         acCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTggggtgtatttttgttataaatttgatttttttgataatattttcatatttaatata                                    <  1:1297538‑M2/91‑58 (MQ=255)

                                                         acCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGCTGTATATCATTCTCATCATATTCTAGGCTGTTTTTAACAAACTA‑AATGTAGTg                                   >  1:3615016/1‑91 (MQ=255)

                                                          ccccTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTA‑AATATAGTGa                                  >  1:1844705/1‑91 (MQ=255)

                                                          ccccTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTA‑AATATAGTGa                                  <  2:1807281/91‑1 (MQ=255)

                                                          ccccTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTA‑AATATAGTGa                                  >  2:817619/1‑91 (MQ=255)

                                                            ccTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTA‑AATATAGTGAAt                                <  1:874310/91‑1 (MQ=255)

                                                            ccTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTA‑AATATAGTGAAt                                <  2:2262053/91‑1 (MQ=255)

                                                             cTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTA‑AATATAGTGAATg                               <  2:2183932/91‑1 (MQ=255)

                                                               tAAAGTTAGGTCTTTCAATCCAACTTTTggggtgtatttttgttataaatttgatttttttgataatattttcatatttaatataatcata                              <  1:666011‑M2/91‑64 (MQ=255)

                                                                 aaGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTA‑AATATAGTGAATGCaaa                           <  1:2795485/91‑1 (MQ=255)

                                                                 aaGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTA‑AATATAGTGAATGCaaa                           <  1:3552601/91‑1 (MQ=255)

                                                                  aGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTA‑AATATAGTGAATGCAAAt                          >  1:230899/1‑91 (MQ=255)

                                                                  aGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTA‑AATATAGTGAATGCAAAt                          >  1:778279/1‑91 (MQ=255)

                                                                  aGTTAGGTCTTTCAATCCAACTTTAaggggtgtatttttgttataaatttgatttttttgataatattttcatatttaatataatcataat                           <  1:2399586‑M2/91‑67 (MQ=255)

                                                                     tAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTA‑AATATAGTGAATGCAAATCaa                       >  1:3633718/1‑91 (MQ=255)

                                                                     tAGGTCTTTCAATCCAACTTTAaggggtgtatttttgttataaatttgatttttttgataatattttcatatttaatataatcataattag                        <  1:3527453‑M2/91‑70 (MQ=255)

                                                                      aGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTA‑AATATAGTGAATGCAAATCAAc                      >  1:3591420/1‑91 (MQ=255)

                                                                      aGGTCTTACAATCCAACGTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTGTTTAACAAACTA‑AATATAGTGTATACAAATCAAc                      >  2:2194226/1‑91 (MQ=255)

                                                                          cTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTA‑AATATAGTGAATGCAAATCAACtatt                  <  1:1763642/91‑1 (MQ=255)

                                                                          cTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTA‑AATATAGTGAATGCAAATCAACtatt                  <  2:514132/91‑1 (MQ=255)

                                                                          cTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTA‑AATATAGTGAATGCAAATCAACtatt                  >  2:2624046/1‑91 (MQ=255)

                                                                            ttCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTA‑AATATAGTGAATGCAAATCAACtattat                <  2:1176399/91‑1 (MQ=255)

                                                                            ttCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTA‑AATATAGTGAATGCAAATCAACtattat                >  2:1718877/1‑91 (MQ=255)

                                                                            ttCAATCCAACTTTGTGGGTGTATATCATTCTCATCATATACTAGGTTGTTTTTAACAAACTA‑AATATAGTGAATGCAAATCAACtattat                <  2:844740/91‑1 (MQ=255)

                                                                             tCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTA‑AATATAGTGAATGCAAATCAACTattatt               >  1:2467572/1‑91 (MQ=255)

                                                                               aaTCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTA‑AATATAGTGAATGCAAATCAACTATTATTTa             >  1:3429961/1‑91 (MQ=255)

                                                                                aTCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTA‑AATATAGTGAATGCAAATCAACTATTATTTaa            <  2:2968965/91‑1 (MQ=255)

                                                                                 tCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTA‑AATATAGTGAATGCAAATCAACTATTATTTaaa           >  1:1884066/1‑91 (MQ=255)

                                                                                   cAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTA‑AATATAGTGAATGCAAATCAACTATTATTTAAAtt         <  2:2662211/91‑1 (MQ=255)

                                                                                   cAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTA‑AATATAGTGAATGCAAATCAACTATTATTTAAAtt         <  1:1732873/91‑1 (MQ=255)

                                                                                   cAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTCAACAAACTA‑AATATAGTGAATGCAAATCAACTATTATTTAAAtt         >  1:3082034/1‑91 (MQ=255)

                                                                                    aaCTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTA‑AATATAGTGAATGCAAATCAACTATTATTTAAATTa        <  2:3631644/91‑1 (MQ=255)

                                                                                    aaCTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTA‑AATATAGTGAATGCAAATCAACTATTATTTAAATTa        >  1:792653/1‑91 (MQ=255)

                                                                                     aCTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTA‑AATATAGTGAATGCAAATCAACTATTATTTAAATTAt       >  1:467666/1‑91 (MQ=255)

                                                                                     aCTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTA‑AATATAGTGAATGCAAATCAACTATTATTTAAATTAt       <  1:1401769/91‑1 (MQ=255)

                                                                                        tttGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTA‑AATATAGTGAATGCAAATCAACTATTATTTAAATTATGaa    >  2:2357347/1‑91 (MQ=255)

                                                                                         ttGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTA‑AATATAGTGAATGCAAATCAACTATTATTTAAATTATGAat   >  1:1263407/1‑91 (MQ=255)

                                                                                         ttGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTA‑AATATAGTGAATGCAAATCAACTATTATTTAAATTATGAat   >  2:877141/1‑91 (MQ=255)

                                                                                          tGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTA‑AATATAGTGAATGCAAATCAACTATTATTTAAATTATGAatt  >  1:1501682/1‑91 (MQ=255)

                                                                                          tGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTA‑AATATAGTGAATGCAAATCAACTATTATTTAAATTATGAatt  >  1:962573/1‑91 (MQ=255)

ATGATTATATTAAATATGAAAATATTATCAAAAAAATCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTA‑AATATAGTGAATGCAAATCAACTATTATTTAAATTATGAATT  >  USA300TCH1516_ALE/2622870‑2623050

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.