BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2721747	162 (0.850)	16 (0.090)	12/146	NT	9.4%	intergenic (+28/+119)	USA300HOU_RS14000/yciC_3	putative hydrolase/Putative metal chaperone YciC
*	?	USA300TCH1516_ALE	= 2721776	159 (0.920)	16 (0.090)	12/146	NT	9.4%	intergenic (+57/+90)	USA300HOU_RS14000/yciC_3	putative hydrolase/Putative metal chaperone YciC

Only 100 of 221 total aligned reads displayed.

TTTGCTGATGTATTATTAAATATGTGGGGTTAATTGATTGTTCTCTAATAAAACAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGTTATTATACATGAAGGCATGTTAACCATTCTCTTCCACTGAAAACAC  >  USA300TCH1516_ALE/2721687‑2721866

tttGCTGATGTATTATTAAATATGTGGGGTTAATTGATTGTTCTCTAATAAAACAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGAc                                                                                           <  2:2797409‑M2/91‑2 (MQ=255)

tttGCTGATGTATTATTAAATATGTGGGGTTAATTGATTGTTCTCTAATAAAACAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGAc                                                                                           <  2:2037711‑M2/91‑2 (MQ=255)

 ttGCTGATGTATTATTAAATATGTGGGGTTAATTGATTGTTCTCTAATAAAACAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGAcc                                                                                          <  1:3539924‑M2/91‑3 (MQ=255)

  tGCTGATGTATTATTAAATATGTGTGGGTAATTGATTGTTCTCTAATAAAACAGCGTTGACATTGTTCAAATTATATTTGATGGCTGAcca                                                                                         >  2:1153206‑M2/1‑88 (MQ=255)

  tGCTGATGTATTATTAAATATGTGGGGTTAATTGATTGTTCTCTAATAAAACAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGAcca                                                                                         >  2:3640153‑M2/1‑88 (MQ=255)

    cTGATGTATTATTAAATATGTGGGGTTAATTGATTGTTCTCTAATAAAACAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGAccaag                                                                                       >  2:1358027‑M2/1‑86 (MQ=255)

     tGATGTATTATTAAATATGTGGGGTTAATTGATTGTTCTCTAATAAAACAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGAccaagc                                                                                      >  1:1460946‑M2/1‑85 (MQ=255)

      gATGTATTATTAAATATGTGGGGTTAATTGATTGTTCTCTAATAAAACAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGAccaagct                                                                                     >  1:1080234‑M2/1‑84 (MQ=255)

         gTATTATTAAATATGTGGGGTTAATTGATCGTTCTCTAATAAAACAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCttat                                                                                  >  1:2421323/1‑91 (MQ=255)

          tattatTAAATATGTGGGGTTAATTGATTGTTCTCTAATAAAACAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCttatt                                                                                 >  1:1202185/1‑91 (MQ=255)

          tattatTAAATATGTGGGGTTAATTGATTGTTCTCTAATAAAACAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCttatt                                                                                 <  2:3522095/91‑1 (MQ=255)

            ttattaAATATGTGGGGTTAATTGATTGTTCTCTAATAAAACAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCttatttt                                                                               <  2:629167/91‑1 (MQ=255)

            ttattaAATATGTGGGGTTAATTGATTGTTCTCTAATAAAACAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCttatttt                                                                               <  1:509118/91‑1 (MQ=255)

            ttattaAATATGTGGGGTTAATTGATTGTTCTCTAATAAAACAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCttatttt                                                                               <  1:672945/91‑1 (MQ=255)

               ttaAATATGTGGGGTTAATTGATTGTTCTCTAATAAAACAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCttatttttat                                                                            >  1:2350317/1‑91 (MQ=255)

                   atatGTGGGGTTAATTGATTGTTCTCTAATAAAACAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTAc                                                                        <  1:643123/91‑1 (MQ=255)

                    tatGTGGGCTTAATTGATTGTTCTCTAATAAAACAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACg                                                                       <  2:3379934/91‑1 (MQ=255)

                     atGTGGGGTTAATTGATTGTTCTCTAATAAAACAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGc                                                                      <  1:2240475/91‑1 (MQ=255)

                     atGTGGGGTTAATTGATTGTTCTCTAATAAAACAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGc                                                                      >  2:3025327/1‑91 (MQ=255)

                      tgtgGGGTTAATTGATTGTTCTCTAATAAAACAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCt                                                                     <  1:3249703/91‑1 (MQ=255)

                        tgGGGTTAATTGATTGTTCTCTAATAAAACAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTa                                                                   <  1:1673072/91‑1 (MQ=255)

                        tgGGGTTAATTGATTGTTCTCTAATAAAACAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTa                                                                   <  1:2460683/91‑1 (MQ=255)

                        tgGGGTTAATTGATTGTTCTCTAATAAAACAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTa                                                                   >  2:2328243/1‑91 (MQ=255)

                        tgGGGTTAATTGATTGTTCTCTAATAAAACAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTa                                                                   <  2:668489/91‑1 (MQ=255)

                         ggggTTAATTGATTGTTCTCTAATAAAACAGTTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTaa                                                                  <  2:258370/91‑1 (MQ=255)

                         ggggTTAATTGATTGTTCTCTAATAAAACAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTaa                                                                  <  1:1594615/91‑1 (MQ=255)

                          gggTTAATTGATTGTTCTCTAATAAAACAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTaaa                                                                 >  1:385103/1‑91 (MQ=255)

                             ttAATTGATTGTTCTCTAATAAAACAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGt                                                              <  1:56164/91‑1 (MQ=255)

                               aaTTGATTGTTCTCTAATAAAACAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTc                                                            >  1:2735967/1‑91 (MQ=255)

                                attgattgTTCTCTAATAAAACAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCa                                                           >  2:1828153/1‑91 (MQ=255)

                                attgattgTTCTCTAATAAAACAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCa                                                           <  1:1044978/91‑1 (MQ=255)

                                attgattgTTCTCTAATAAAACAGCTTGGACAGTTTTCAAATTATAGTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCa                                                           <  2:2615583/91‑1 (MQ=255)

                                 ttgattgTTCTCTAATAAAACAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGtt                                                             <  2:672058/88‑1 (MQ=255)

                                  tgattgTTCTCTAATAAAACAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCaaa                                                         >  1:3201779/1‑91 (MQ=255)

                                  tgattgTTCTCTAATAAAACAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCaaa                                                         <  1:174557/91‑1 (MQ=255)

                                   gattgTTCTCTAATAAAACAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAAt                                                        >  1:199390/1‑91 (MQ=255)

                                   gattgTTCTCTAATAAAACAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAAt                                                        >  2:3279770/1‑91 (MQ=255)

                                     ttgTTCTCTAATAAAACAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCa                                                      <  1:2095486/91‑1 (MQ=255)

                                       gTTGTCTAATAAAACAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAAc                                                    <  1:3122352/91‑1 (MQ=255)

                                        ttCTCTAATAAAACAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACt                                                   >  1:1778792/1‑91 (MQ=255)

                                         tctcTAATAAAACAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTc                                                  >  2:2184324/1‑91 (MQ=255)

                                          ctctAATAAAACAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCg                                                 <  2:2434640/91‑1 (MQ=255)

                                          ctctAATAAAACAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCg                                                 >  2:3477809/1‑91 (MQ=255)

                                           tctAATAAAACAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGt                                                <  2:3113613/91‑1 (MQ=255)

                                            ctAATAAAACAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGtt                                               <  1:1508870/91‑1 (MQ=255)

                                            ctAATAAAACAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGtt                                               <  2:1164545/91‑1 (MQ=255)

                                                taaAACAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGttatta                                           <  1:3461572/91‑1 (MQ=255)

                                                  aaaCAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGTTATtata                                         >  1:3363304/1‑91 (MQ=255)

                                                   aaCAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGAccaagctgttttattagagaacaatcaattaaccccacctatttaataatac                                        <  1:3884384‑M2/91‑53 (MQ=255)

                                                   aaCAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGTTATTATAc                                        <  1:3450007/91‑1 (MQ=255)

                                                    aCAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGTTATTATACa                                       >  1:827567/1‑91 (MQ=255)

                                                    aCAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGTTATTATACa                                       >  1:2524320/1‑91 (MQ=255)

                                                    aCAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGTTATTATACa                                       >  2:1010324/1‑91 (MQ=255)

                                                    aCAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGTTATTATACa                                       >  1:2521703/1‑91 (MQ=255)

                                                    aCAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGTTATTATACa                                       >  2:3766363/1‑91 (MQ=255)

                                                    aCAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGTTATTATACa                                       >  2:2490404/1‑91 (MQ=255)

                                                     ctgCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGTTATTATACAt                                      <  2:1716724/89‑1 (MQ=255)

                                                     cAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGTTATTATACAt                                      <  1:259414/91‑1 (MQ=255)

                                                       gCTTGGACAGTTTTCAAATTATATTTGATGGCTGAccaagctgttttattagagaacaatcaattaaccccacatatttaataatacatca                                    <  1:92463‑M2/91‑57 (MQ=255)

                                                       gCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGTTATTATACATGa                                    >  1:442311/1‑91 (MQ=255)

                                                        cTTGGACAGTTTTCAAATTATATTTGATGGCTGAccacgctgttttattagcgaacaatcaattagccccacatatttaataatatatcag                                   <  1:3610834‑M2/91‑58 (MQ=255)

                                                        cTTGGACAGTTTTCAAATTATATTTGATGGCTGAccaagctgttttattagagaacaatcaattaaccccacatatttaataatacatcag                                   <  1:2785292‑M2/91‑58 (MQ=255)

                                                        cTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGTTATTATACATGaa                                   >  1:3557784/1‑91 (MQ=255)

                                                         ttGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGTTATTATACATGAAg                                  <  1:2673908/91‑1 (MQ=255)

                                                         ttGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGTTATTATACATGAAg                                  >  2:2303889/1‑91 (MQ=255)

                                                          tGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGTTATTATACATGAAgg                                 <  1:3699785/91‑1 (MQ=255)

                                                           ggACAGTTTTCAAATTATATTTGATGGCTGAccaagctgttttattagagaacaatcaattaaccccacatatttaataatacatcagcaa                                <  1:276487‑M2/91‑61 (MQ=255)

                                                           ggACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGTTATTATACTTGAAGGc                                >  2:3447939/1‑91 (MQ=255)

                                                           ggACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGTTATTATACATGAAGGc                                >  2:3872118/1‑91 (MQ=255)

                                                           ggACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGTTATTATACATGAAGGc                                >  2:2303619/1‑91 (MQ=255)

                                                           ggACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTGTATTTACGCTTAAACGTTCAAATCAACTCGTTATTATACATGAAGGc                                <  1:3869849/91‑1 (MQ=255)

                                                             aCAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGTTATTATACATGAAGGCAt                              <  2:852280/91‑1 (MQ=255)

                                                               aGTTTTCAAATTATATTTGATGGCTGAccaagctgttttattagagaacaatcaattaaccccacatatttaataatacatcagcaaagcc                            <  2:1278804‑M2/91‑65 (MQ=255)

                                                               aGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGTTATTATACATGAAGGCATGt                            >  2:3560305/1‑91 (MQ=255)

                                                                gTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGTTATTATACATGAAGGCATGtt                           >  1:142427/1‑91 (MQ=255)

                                                                 ttttCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGTTATTATACATGAAGGCATGTTa                          <  2:2484089/91‑1 (MQ=255)

                                                                 ttttCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGTTATTATACATGAAGGCATGTTa                          >  1:1853028/1‑91 (MQ=255)

                                                                 ttttCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGTTATTATACATGAAGGCATGTTa                          <  2:322022/91‑1 (MQ=255)

                                                                  tttCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGTTATTATACATGAAGGCATGTTaa                         <  1:2839496/91‑1 (MQ=255)

                                                                    tCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGTTATTATACATGAAGGCATGTTAAcc                       >  2:2055142/1‑91 (MQ=255)

                                                                     cAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGTTATTATACATGAAGGCATGTTAACCa                      >  2:3013827/1‑91 (MQ=255)

                                                                       aaTTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGTTATTATACATGAAGGCATGTTAACCAtt                    >  1:3599710/1‑91 (MQ=255)

                                                                          tataTTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGTTATTATACATGAAGGCATGTTAACCATtctc                 >  1:1111373/1‑91 (MQ=255)

                                                                            tatTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGTTATTATACATGAAGGCATGTTAACCATTCTCtt               <  2:521213/91‑1 (MQ=255)

                                                                            tatTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGTTATTATACATGAAGGCATGTTAACCATTCCCtt               >  1:1070118/1‑91 (MQ=255)

                                                                             atTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGTTATTATACATGAAGGCATGTTAACCATTCTCTTc              <  2:30698/91‑1 (MQ=255)

                                                                             atTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGTTATTATACATGAAGGCATGTTAACCATTCTCTTc              <  2:695632/91‑1 (MQ=255)

                                                                              tttGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGTTATTATACATGAAGGCATGTTAACCATTCTCTTcc             >  2:1060245/1‑91 (MQ=255)

                                                                              tttGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGTTATTATACATGAAGGCATGTTAACCATTCTCTTcc             >  1:1333560/1‑91 (MQ=255)

                                                                                tGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGTTATTATACATGAAGGCATGTTAACCATTCTCTTCCAc           >  1:297354/1‑91 (MQ=255)

                                                                                  aTGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGTTATTATACATGAAGGCATGTTAACCATTCTCTTCCACTg         >  1:1721159/1‑91 (MQ=255)

                                                                                      cTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGTTATTATACATGAAGGCATGTTAACCATTCTCTTCCACTGaaaa     >  2:1434863/1‑91 (MQ=255)

                                                                                       tGACCAGGCTTATTTTTATTTCCGCTAAACCGTTCAAATCAACTCGTTATTATACATGAAGGCATGTTAACCATCCTCTCCCACTGAAAac    <  2:142427/91‑1 (MQ=255)

                                                                                       tGACCAAGCTTATTTTTATTTACGCTTAATCGTTCAAATCAACTCGTTATTATACATGAAGGCATGTTAACCATTCTCTTCCACTGAAAac    <  2:1394854/91‑1 (MQ=255)

                                                                                       tGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGTTATTATACATGAAGGCATGTTAACCATTCTCTTCCACTGAAAac    >  2:1645910/1‑91 (MQ=255)

                                                                                       tGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGTTATTATACATGAAGGCATGTTAACCATTCTCTTCCACTGAAAac    <  2:2521703/91‑1 (MQ=255)

                                                                                        gACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGTTATTATACATGAAGGCATGTTAACCATTCTCTTCCACTGAAAaca   <  1:3424346/91‑1 (MQ=255)

                                                                                        gACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGTTATTATACATGAAGGCATGTTAACCATTCTCTTCCACTGAAAaca   >  2:3479593/1‑91 (MQ=255)

                                                                                        gACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGTTATTATACATGAAGGCATGTTAACCATTCTCTTCCACTGAAAaca   >  2:811369/1‑91 (MQ=255)

                                                                                         aCCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGTTATTATACATGAAGGCATGTTAACCATTCTCTTCCACTGAAAacac  <  1:2384487/91‑1 (MQ=255)

TTTGCTGATGTATTATTAAATATGTGGGGTTAATTGATTGTTCTCTAATAAAACAGCTTGGACAGTTTTCAAATTATATTTGATGGCTGACCAAGCTTATTTTTATTTACGCTTAAACGTTCAAATCAACTCGTTATTATACATGAAGGCATGTTAACCATTCTCTTCCACTGAAAACAC  >  USA300TCH1516_ALE/2721687‑2721866

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.