New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 2818806 =196 (1.030)8 (0.050) 7/142 NT 4.8% intergenic (‑478/+67) sraP/USA300HOU_RS14425 Serine‑rich adhesin for platelets/hypothetical protein
?USA300TCH1516_ALE 2818849 = 143 (0.850)intergenic (‑521/+24) sraP/USA300HOU_RS14425 Serine‑rich adhesin for platelets/hypothetical protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 256 total aligned reads displayed.

TAAATACCACGACATATTGCTTTAACATTTTCATTTATAAAGCGAAAAAATGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATCGAAATTTCTTCCTTCTAAACCTGCTAACTCTTCTTTAGAA  >  USA300TCH1516_ALE/2818759‑2818939
                                                                                          |                                                                                          
taAATACCACGACATATTGCTTTAACATTTTCATTTATAAAGCGAAAAAATGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTa                                                                                            >  1:1009269/1‑91 (MQ=255)
taAATACCACGACATATTGCTTTAACATTTTCATTTATAAAGCGAAAAAATGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTa                                                                                            >  2:3128254/1‑91 (MQ=255)
taAATACCACGACATATTGCTTTAACATTTTCATTTATAAAGCGAAAAAATGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTa                                                                                            >  2:3128782/1‑91 (MQ=255)
 aaaTACCACGACATATTGCTTTAACATTTTCATTTATAAAGCGAAAAAATGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTaa                                                                                           >  2:1969543/1‑91 (MQ=255)
 aaaTACCACGACATATTGCTTTAACATTTTCATTTATAAAGCGAAAAAATGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTaa                                                                                           >  2:3483829/1‑91 (MQ=255)
  aaTACCACGACATATTGCTTTAACATTTTCATTTATAAAGCGAAAAAATGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAAt                                                                                          <  1:1415732/91‑1 (MQ=255)
   aTACCACGACATATTGCTTTAACATTTTCATTTATAAAGCGAAAAAATACATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAAtt                                                                                         >  1:2801603/1‑91 (MQ=255)
     aCCACGACATATTGCTTTAACATTTTCATTTATAAAGCGAAAAAATGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCa                                                                                       <  2:2473360/91‑1 (MQ=255)
     aCCACGACATATTGCTTTAACATTTTCATTTATAAAGCGAAAAAATGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCa                                                                                       <  1:604878/91‑1 (MQ=255)
     aCCACGACATATTGCTTTAACATTTTCATTTATAAAGCGAAAAAATGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCa                                                                                       >  2:2352816/1‑91 (MQ=255)
      ccACGACATATTGCTTTAACATTTTCATTTATAAAGCGAAAAAATGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCAc                                                                                      <  2:701795/91‑1 (MQ=255)
      ccACGACATATTGCTTTAACATTTTCATTTATAAAGCGAAAAAATGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCAc                                                                                      >  2:1596379/1‑91 (MQ=255)
      ccACGACATATTGCTTTAACATTTTCATTTATAAAGCGAAAAAATGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCAc                                                                                      <  2:2634422/91‑1 (MQ=255)
      cagatgaaaagatagaagtaatttaatcattttagtgaattAAATGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCAc                                                                                      >  1:1679663‑M1/42‑91 (MQ=255)
        aCGACATATTGCTTTAACATTTTCATTTATAAAGCGAAAAAATGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTa                                                                                    <  2:393015/91‑1 (MQ=255)
          gACATATTGCTTTAACATTTTCATTTATAAAGCGAAAAAATGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTaaa                                                                                  >  2:1089158/1‑91 (MQ=255)
           aCATATTGCTTTAACATTTTCATTTATAAAGCGAAAAAATGGATCGCTACTAAGTTGAATGTTTAGTCAGGATGCATTTGATTCACTaaaa                                                                                 >  2:2958386/1‑91 (MQ=255)
           aCATATTGCTTTAACATTTTCATTTATAAAGCGAAAAAATGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTaaaa                                                                                 >  1:2211485/1‑91 (MQ=255)
             atatTGCTTTAACATTTTCATTTATAAAGCGAAAAAATGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATg                                                                               <  1:221544/91‑1 (MQ=255)
             atatTGCTTTAACATTTTCATTTATAAAGCGAAAAAATGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATg                                                                               >  1:2703920/1‑91 (MQ=255)
             atatTGCTTTAACATTTTCATTTATAAAGCGAAAAAATGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATg                                                                               >  1:3194436/1‑91 (MQ=255)
             atatTGCTTTAACATTTTCATTTATAAAGCGAAAAAATGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATg                                                                               <  2:1392759/91‑1 (MQ=255)
               atTGCTTTAACATTTTCATTTATAAAGCGAAAAAATGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGAt                                                                             <  1:2868417/91‑1 (MQ=255)
                ttGCTTTAACATTTTCATTTATAAAGCGAAAAAATGCATCGCTAGTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGAtt                                                                            <  1:3073430/91‑1 (MQ=255)
                    tttAACATTTTCATTTATAAAGCGAAAAAATGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAAt                                                                        <  1:1417062/91‑1 (MQ=255)
                    tttAACATTTTCATTTATAAAGCGAAAAAATGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAAt                                                                        <  1:997497/91‑1 (MQ=255)
                        aCATTTTCATTTATAAAGCGAAAAAATGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACt                                                                    <  2:2603467/91‑1 (MQ=255)
                          aTTTTCATTTATAAAGCGAAAAAATGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTta                                                                  <  1:3742063/91‑1 (MQ=255)
                          aTTTTCATTTATAAAGCGAAAAAATGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAAGTCACTAAAATGATTAAATTACTta                                                                  >  2:3606738/1‑91 (MQ=255)
                            tttCATTTATAAAGAGAAAAAATGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTtata                                                                >  2:3300771/1‑91 (MQ=255)
                             ttCATTTATAAAGCGAAAAAATGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTatat                                                               >  2:1256064/1‑91 (MQ=255)
                             ttCATTTATAAAGCGAAAAAATGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTatat                                                               >  2:855252/1‑91 (MQ=255)
                             ttCATTTATAAAGCGAAAAAATGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTatat                                                               <  1:1531562/91‑1 (MQ=255)
                             ttCATTTATAAAGCGAAAAAATGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTatat                                                               <  2:667079/91‑1 (MQ=255)
                              tCATTTATAAAGCGAAAAAATGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATc                                                              <  1:3423953/91‑1 (MQ=255)
                               cATTTATAAAGCGAAAAAATGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCt                                                             >  2:274133/1‑91 (MQ=255)
                                 tttATAAAGCGAAAAAATGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCttt                                                           <  2:3239824/91‑1 (MQ=255)
                                 tttATAAAGCGAAAAAATGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCttt                                                           <  2:866884/91‑1 (MQ=255)
                                   tataAAGCGAAAAAATGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTc                                                         <  2:1850272/91‑1 (MQ=255)
                                    ataAAGCGAAAAAATGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCa                                                        <  1:1431060/91‑1 (MQ=255)
                                         gCGAAAAAATGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCtga                                                   >  1:1680082/1‑91 (MQ=255)
                                            aaaaaaTGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCtgattg                                                >  2:1241455/1‑91 (MQ=255)
                                               AAATGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTgattgatt                                             >  1:3785070‑M1/1‑91 (MQ=255)
                                                AATGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTa                                            <  2:2132799‑M1/91‑1 (MQ=255)
                                                AATGCATCGCTACTAAGTCGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTa                                            <  2:3173065‑M1/91‑1 (MQ=255)
                                                 ATGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTAt                                           <  2:155771‑M1/91‑1 (MQ=255)
                                                 ATGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTAt                                           >  1:2731597‑M1/1‑91 (MQ=255)
                                                 ATGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTAt                                           <  2:1358695‑M1/91‑1 (MQ=255)
                                                  tgcatccttactaaacattcaacttagtagcgatgcatttAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATc                                          >  1:2247450‑M2/41‑91 (MQ=255)
                                                  TGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTAt                                           >  1:847819‑M1/1‑90 (MQ=255)
                                                  TGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATc                                          >  2:201925‑M1/1‑91 (MQ=255)
                                                  TGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTGAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATc                                          <  2:956973‑M1/91‑1 (MQ=255)
                                                   GCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATCg                                         >  2:3347162‑M1/1‑91 (MQ=255)
                                                    catccttactaaacattcaacttagtagcgatgcatttAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGCTTGATTATCGa                                        >  1:3516874‑M2/39‑91 (MQ=255)
                                                    CATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATCGa                                        <  2:1087579‑M1/91‑1 (MQ=255)
                                                    CATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATCGa                                        <  1:1921008‑M1/91‑1 (MQ=255)
                                                     ATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATCGaa                                       >  1:3209763‑M1/1‑91 (MQ=255)
                                                      TCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATCGaaa                                      <  1:2197226‑M1/91‑1 (MQ=255)
                                                       CGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATCGAAAt                                     <  1:840560‑M1/91‑1 (MQ=255)
                                                       CGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATCGAAAt                                     >  1:1151103‑M1/1‑91 (MQ=255)
                                                         ctactaAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATCGAAAttt                                   <  1:2353760/91‑1 (MQ=255)
                                                          tactaAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATCGAAATttc                                  >  2:811292/1‑91 (MQ=255)
                                                            ctaAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATCGAAATttctt                                <  1:536447/91‑1 (MQ=255)
                                                             taAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATCGAAATttcttc                               <  2:3274617/91‑1 (MQ=255)
                                                             taAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATCGAAATttcttc                               <  2:537885/91‑1 (MQ=255)
                                                             taAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATCGAAATttcttc                               <  1:2778328/91‑1 (MQ=255)
                                                              aaGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATCGAAATTTcttcc                              >  2:1913650/1‑91 (MQ=255)
                                                               aGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATCGAAATTTcttcct                             >  2:3790935/1‑91 (MQ=255)
                                                               aGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATCGAAATTTcttcct                             <  2:2077988/91‑1 (MQ=255)
                                                               aGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATCGAAATTTcttcct                             <  1:2114466/91‑1 (MQ=255)
                                                                gTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATCGAAATTTcttcctt                            >  2:1963799/1‑91 (MQ=255)
                                                                 ttGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATCGAAATTTcttccttc                           >  1:1293512/1‑91 (MQ=255)
                                                                 ttGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATCGAAATTTcttccttc                           >  2:2792474/1‑91 (MQ=255)
                                                                  tGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATCGAAATTTCTTCCTTCt                          >  2:423050/1‑91 (MQ=255)
                                                                  tGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATCGAAATTTCTTCCTTCt                          >  1:1594456/1‑91 (MQ=255)
                                                                  tGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATCGAAATTTCTTCCTTCt                          <  1:1765876/91‑1 (MQ=255)
                                                                  tGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATCGAAATTTCTTCCTTCt                          <  2:1754911/91‑1 (MQ=255)
                                                                  tGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATCGAAATTACTTCCTTCt                          <  1:1954815/91‑1 (MQ=255)
                                                                  tGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTAATATCTTTTCATCTGATTGATTATCGAAATTTCTTCCTTCt                          <  1:3365684/91‑1 (MQ=255)
                                                                    aaTGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATCGAAATTTCTTCCTTCTaa                        <  1:3352196/91‑1 (MQ=255)
                                                                        tttAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATCGAAATTTCTTCCTTCTAAACCt                    >  1:2577151/1‑91 (MQ=255)
                                                                         ttAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATCGAAATTTCTTCCTTCTTAACCTg                   <  1:3024249/91‑1 (MQ=255)
                                                                         ttAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATCGAAATTTCTTCCTTCTAAACCTg                   <  1:1251984/91‑1 (MQ=255)
                                                                         ttAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATCGAAATTTCTTCCTTCTAAACCTg                   >  2:641761/1‑91 (MQ=255)
                                                                           aGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATCGAAATTTCTTCCTTCTAAACCTGCt                 <  1:1788211/91‑1 (MQ=255)
                                                                            gTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATCGAAATTTCTTCCTTCTAAACCTGCTa                >  2:3353236/1‑91 (MQ=255)
                                                                              aaGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATCGAAATTTCTTCCTTCTAAACCTGCTAAc              >  2:1774988/1‑91 (MQ=255)
                                                                              aaGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATCGAAATTTCTTCCTTCTAAACCTGCTAAc              >  1:2421181/1‑91 (MQ=255)
                                                                              aaGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATCGAAATTTCTTCCTTCGAAACCTGCTAAc              >  2:3233105/1‑91 (MQ=255)
                                                                                  atgcatttAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATCGAAATTTCTTCCTTCTAAACCTGCTAACtctt          <  2:2707835‑M2/83‑1 (MQ=255)
                                                                                  atgcatttAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATCGAAATTTCTTCCTTCTAAACCTGCTAACtctt          >  1:1358572‑M2/9‑91 (MQ=255)
                                                                                  atgcatttAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATCGAAATTTCTTCCTTCTAAACCTGCTAACtctt          <  2:2544170‑M2/83‑1 (MQ=255)
                                                                                   tgcatttAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATCGAAATTTCTTCCTTCTAAACCTGCTAACtcttc         <  1:2079093‑M2/84‑1 (MQ=255)
                                                                                     catttAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTCTCGAAATTTCTTCCTTCTAAACCTGCTAACTcttctt       <  1:3281750‑M2/86‑1 (MQ=255)
                                                                                     catttAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATCGAAATTTCTTCCTTCTAAACCTGCTAACTcttctt       <  1:1546140‑M2/86‑1 (MQ=255)
                                                                                      atttAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATCGAAATTTCTTCCTTCTAAACCTGCTAACTCTTCttt      >  1:1873472‑M2/5‑91 (MQ=255)
                                                                                      atttAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATCGAAATTTCTTCCTTCTAAACCTGCTAACTCTTCttt      >  2:1808654‑M2/5‑91 (MQ=255)
                                                                                        ttAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATCGAAATTTCTTCCTTCTAAACCTGCTAACTCTTCTTTAg    <  2:445740‑M2/89‑1 (MQ=255)
                                                                                          aaTTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATCGAAATTTCTTCCTTCTAAACCTGCTAACTCTTCTTTAGaa  <  2:590394/91‑1 (MQ=255)
                                                                                          aaTTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATCGAAATTTCTTCCTTCTAAACCTGCTAACTCTTCTTTAGaa  <  2:368431/91‑1 (MQ=255)
                                                                                          |                                                                                          
TAAATACCACGACATATTGCTTTAACATTTTCATTTATAAAGCGAAAAAATGCATCGCTACTAAGTTGAATGTTTAGTAAGGATGCATTTAATTCACTAAAATGATTAAATTACTTATATCTTTTCATCTGATTGATTATCGAAATTTCTTCCTTCTAAACCTGCTAACTCTTCTTTAGAA  >  USA300TCH1516_ALE/2818759‑2818939

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.