| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2696548 = | 162 (0.920) | 29 (0.190) | 16/160 | 13.6 | 16.8% | intergenic (+100/‑140) | USA300HOU_RS13875/copA | hypothetical protein/Copper‑exporting P‑type ATPase A |
| ? | USA300TCH1516_ALE | 2696587 = | 143 (0.920) | intergenic (+139/‑101) | USA300HOU_RS13875/copA | hypothetical protein/Copper‑exporting P‑type ATPase A | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACCCCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2696647‑2696548‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caatctctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCAC > USA300TCH1516_ALE/2696587‑2696673 ACCCCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAAC > 1:2826713/1‑91ACCCCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAAC > 2:2101766/1‑91ACCCCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAAC < 1:1663717/91‑1 CCCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCTAACATTGCACAACAA < 1:2644939/91‑1 CCCCTATAGGTATATAAGTCAATCGTTGCGTTGTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCGAACATTGCACAACAA < 1:2645215/91‑1 CCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAAc > 1:2694398/1‑90 CCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAAT > 1:3071010/1‑91 CCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAAT < 2:2518735/91‑1 CCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAAT < 2:2518451/91‑1 CCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAAT < 1:257762/91‑1 CCCTATAGGTATATAAGTCAATCGTAGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTACAAACATTGCACAACAAT > 2:3057882/1‑91 CCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATC < 1:1918481/91‑1 CCTATAGGCATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTACAAAGCAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATC > 2:2755294/1‑91 CTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCT < 2:2500433/91‑1 CTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCT < 2:544065/91‑1 CTATAGGTATATAAGTCAAGCGTTGCGTTTTACTGTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCT < 2:544100/91‑1 AGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCT < 2:2589307/91‑1 AGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCT < 2:2589461/91‑1 AAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTT > 1:1693621/1‑91 GAAAAATAGAGATTGCCGGGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATA > 1:923796/1‑91 AAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATA > 2:2556364/1‑91 AAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATA > 2:1815764/1‑91 AAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATA > 2:1016608/1‑91 AAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATAC > 1:1407027/1‑91 AAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACC > 1:1072366/1‑91 AGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCT > 1:1804290/1‑91 GAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTA > 1:825462/1‑91 GAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTA > 2:1791691/1‑91 AGAGATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGACTGACTTATATACCTAT > 2:2375055/1‑91 AGAGATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGACTGACTTATATACCTAT > 2:2375038/1‑91 GAGATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATA > 2:2819631/1‑91 GAGATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATA > 2:2819241/1‑91 AGATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAG > 1:907799/1‑91 AGATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAG > 1:907859/1‑91 GATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGG > 1:1648238/1‑91 GATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGG > 1:1648317/1‑91 GATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGG > 1:1648753/1‑91 TTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGG > 2:508661/1‑91 TTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGG > 2:1715071/1‑91 TTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGG > 1:2215447/1‑91 GCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGT > 1:1779481/1‑91 GCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGT > 1:11365/1‑91 CCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTA > 2:601643/1‑91 CCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTA > 1:1601448/1‑91 CCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTA > 1:3026279/1‑91 CGTGCAAACATTGCACAGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTAC > 1:2936457/1‑91 CAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTA > 1:2672385/1‑91 CAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATG < 2:1599987/91‑1 CAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATG < 2:2332904/91‑1 CAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATG > 2:863668/1‑91 AATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGA < 2:868246/91‑1 TCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAAT > 2:1597070/1‑91 CTCTCTTTTTTTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATC > 2:664996/1‑91 CTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATC < 2:2089905/91‑1 CTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATC < 1:555473/91‑1 CTCTCTTTTTATTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATC > 2:128940/1‑91 CTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCAC > 2:717845/1‑91 CTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCAC > 2:717933/1‑91 CTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCAC < 1:1555366/91‑1 CTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCAC < 1:1554805/91‑1 ACCCCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2696647‑2696548‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caatctctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCAC > USA300TCH1516_ALE/2696587‑2696673 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |