BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2696548 =	162 (0.920)	29 (0.190)	16/160	13.6	16.8%	intergenic (+100/‑140)	USA300HOU_RS13875/copA	hypothetical protein/Copper‑exporting P‑type ATPase A
*	?	USA300TCH1516_ALE	2696587 =	143 (0.920)	29 (0.190)	16/160	13.6	16.8%	intergenic (+139/‑101)	USA300HOU_RS13875/copA	hypothetical protein/Copper‑exporting P‑type ATPase A
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 161 total aligned reads displayed.

TCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCAC  >  USA300TCH1516_ALE/2696498‑2696673

  atACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtcttttt                                                                                     <  1:2705323/91‑1 (MQ=255)

   tACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtctttttc                                                                                    <  1:2581830/91‑1 (MQ=255)

   tACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtctttttc                                                                                    <  1:2581855/91‑1 (MQ=255)

    aCATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtctttttct                                                                                   <  2:924859/91‑1 (MQ=255)

    aCATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtctttttct                                                                                   <  2:838923/91‑1 (MQ=255)

     cATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtctttttctt                                                                                  <  2:916871/91‑1 (MQ=255)

      aTCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtctttttcttt                                                                                 <  2:1526792/91‑1 (MQ=255)

      aTCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtctttttcttt                                                                                 <  2:2982409/91‑1 (MQ=255)

       tCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtctttttctttt                                                                                >  1:1152291/1‑91 (MQ=255)

        ccTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTctttttcttttt                                                                               <  1:774959/91‑1 (MQ=255)

        ccTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTctttttcttttt                                                                               >  1:600329/1‑91 (MQ=255)

         cTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTa                                                                              <  1:1361605/91‑1 (MQ=255)

           ttAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTaaa                                                                            <  1:288947/91‑1 (MQ=255)

            tAATATTAATTACGGCTTCTTTTATATAGATGCTCAGTAGAGGGTTTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTaaaa                                                                           <  2:2993149/91‑1 (MQ=255)

            tAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTaaaa                                                                           <  2:1549390/91‑1 (MQ=255)

            tAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTaaaa                                                                           <  2:744757/91‑1 (MQ=255)

             aaTATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGTTTGTTGTGTAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAAt                                                                          >  2:3006357/1‑91 (MQ=255)

             aaTATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAAt                                                                          >  1:2043347/1‑91 (MQ=255)

                    attaCGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGgtaaa                                                                   >  1:651222/1‑91 (MQ=255)

                    attaCGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGgtaaa                                                                   <  2:1234061/91‑1 (MQ=255)

                     ttaCGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGgtaaaa                                                                  >  2:2263894/1‑91 (MQ=255)

                     ttaCGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGgtaaaa                                                                  >  2:2262493/1‑91 (MQ=255)

                      taCGACTTCTTTTATATAGATGCTACGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGgtaaaag                                                                 <  2:928219/91‑1 (MQ=255)

                      taCGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGgtaaaag                                                                 >  1:2834010/1‑91 (MQ=255)

                      taCGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGgtaaaag                                                                 <  1:276749/91‑1 (MQ=255)

                       aCGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGgtaaaagt                                                                >  1:2155970/1‑91 (MQ=255)

                       aCGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGgtaaaagt                                                                <  1:1993306/91‑1 (MQ=255)

                       aCGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGgtaaaagt                                                                <  1:1990548/91‑1 (MQ=255)

                       aCGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGgtaaaagt                                                                >  2:2786241/1‑91 (MQ=255)

                          aCTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGgtaaaagtaaa                                                             >  2:2446911/1‑91 (MQ=255)

                          aCTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGgtaaaagtaaa                                                             >  2:964441/1‑91 (MQ=255)

                          aCTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTATTAAAATTGgtaaaagtaaa                                                             >  2:674718/1‑91 (MQ=255)

                           cttcttTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGgtaaaagtaaaa                                                            <  1:343058/91‑1 (MQ=255)

                              cttTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGc                                                         >  2:1640672/1‑91 (MQ=255)

                              cttTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGc                                                         >  2:1827807/1‑91 (MQ=255)

                              cttTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGc                                                         <  2:1758885/91‑1 (MQ=255)

                                 ttATATATATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAAc                                                      <  1:1556014/91‑1 (MQ=255)

                                 ttATATAGATGCTAAGTAGAGAGATTGTTGTGCACTGTTTGCACGGCAATCTCTCCTTGTCTTTTTAAAATTGGTAAAAGTAAAACGCAAc                                                      >  2:265021/1‑91 (MQ=255)

                                 ttATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAAc                                                      <  2:1401747/91‑1 (MQ=255)

                                  tatataGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACg                                                     >  2:1837869/1‑91 (MQ=255)

                                       aGATGCTAAGTTGAGAGATTGTTGTGCAATGTTTGCACGGCAATTTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGa                                                <  1:1152999/91‑1 (MQ=255)

                                       aGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGa                                                <  2:384302/91‑1 (MQ=255)

                                        gATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGAc                                               >  2:1494230/1‑91 (MQ=255)

                                         aTGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACt                                              >  1:889705/1‑91 (MQ=255)

                                          tGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACtt                                             <  2:2377809/91‑1 (MQ=255)

                                           gCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTta                                            >  2:1101502/1‑91 (MQ=255)

                                              aaGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTtatat                                         >  1:421965/1‑91 (MQ=255)

                                               aaaagagagATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTtatata                                        >  2:2556364/4‑91 (MQ=17)

                                               aGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTtatata                                        <  1:1426462/91‑1 (MQ=255)

                                               aGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTtatata                                        >  1:1639025/1‑91 (MQ=255)

                                                gTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATAc                                       <  1:455595/91‑1 (MQ=255)

                                                aaagagagATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATAc                                       >  1:1407027/3‑91 (MQ=17)

                                                 tAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATAcc                                      <  2:1080046/91‑1 (MQ=255)

                                                 aagagagATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATAcc                                      >  1:1072366/2‑91 (MQ=18)

                                                  agagagATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCt                                     >  2:2589307/1‑91 (MQ=255)

                                                  agagagATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCt                                     >  2:2589461/1‑91 (MQ=255)

                                                    agngaTTGCCGTGCAAAAATTGCACAACAAANACACTTTTTCTTTTTNAAATTGGTAAAAGTAAAACNCAACGNTTGACTTAAATACCtat                                   >  2:836181/1‑91 (MQ=16)

                                                    agagaTTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGACTGACTTATATACCtat                                   >  2:2375055/1‑91 (MQ=18)

                                                      agaTTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAACAGTAAAACGCAACGCTTGACTTATATACCTATAg                                 >  2:544100/1‑91 (MQ=255)

                                                      agaTTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAg                                 >  2:2500433/1‑91 (MQ=255)

                                                      agaTTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAg                                 >  2:544065/1‑91 (MQ=255)

                                                       gaTTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAgg                                >  1:1918481/1‑91 (MQ=255)

                                                       gaTTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTGCTTTGTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATGCCTATAgg                                <  2:2755294/91‑1 (MQ=255)

                                                        gttgttgTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAggg                               <  1:2694398/90‑1 (MQ=255)

                                                        aTTGTTGTGCAATGTTTGTACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCTACGATTGACTTATATACCTATAggg                               <  2:3057882/91‑1 (MQ=255)

                                                        aTTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAggg                               >  2:2518735/1‑91 (MQ=255)

                                                         ttgttgTGCAATGTTAGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAgggg                              >  1:2644939/1‑91 (MQ=255)

                                                           gttgtGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGt                            <  2:2101766/91‑1 (MQ=255)

                                                           gttgtGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGt                            >  1:1663717/1‑91 (MQ=255)

                                                             tgtgCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTAc                          >  2:1979617/1‑91 (MQ=255)

                                                             tgtgCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTAc                          <  1:2282078/91‑1 (MQ=255)

                                                               tgCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACAt                        >  1:2855308/1‑91 (MQ=255)

                                                                gCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACAtt                       >  1:1083379/1‑91 (MQ=255)

                                                                gCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACAtt                       <  1:2362970/91‑1 (MQ=255)

                                                                gCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACAtt                       >  2:1589832/1‑91 (MQ=255)

                                                                 cAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTa                      >  1:1431025/1‑91 (MQ=255)

                                                                 cAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTa                      <  1:2275090/91‑1 (MQ=255)

                                                                  aaTGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAg                     <  1:2959820/91‑1 (MQ=255)

                                                                       ttGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCGACGATTGACTTATATACCTATAGGGGGTACATTAGACgtg                <  1:1347055/91‑1 (MQ=255)

                                                                        tGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACgtgt               >  2:1374805/1‑91 (MQ=255)

                                                                        tGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACgtgt               >  1:1889180/1‑91 (MQ=255)

                                                                         gCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTa              <  2:267923/91‑1 (MQ=255)

                                                                         gCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTa              <  1:2493355/91‑1 (MQ=255)

                                                                         gCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTa              >  2:2452579/1‑91 (MQ=255)

                                                                          cACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTaa             >  1:2788770/1‑91 (MQ=255)

                                                                          cACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTaa             >  2:1155604/1‑91 (MQ=255)

                                                                          cACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTaa             >  2:1175827/1‑91 (MQ=255)

                                                                          cACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTaa             >  2:1775034/1‑91 (MQ=255)

                                                                           aCGGCAATCTCTGTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACCATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAAc            >  1:2384177/1‑91 (MQ=255)

                                                                           aCGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAAc            >  2:1043194/1‑91 (MQ=255)

                                                                           aCGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAAc            <  1:3034633/91‑1 (MQ=255)

                                                                            cGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACa           >  1:1599987/1‑91 (MQ=255)

                                                                             ggCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACaa          <  1:697388/91‑1 (MQ=255)

                                                                               cAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATg        >  2:863668/1‑91 (MQ=255)

                                                                               cAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATg        <  2:2332904/91‑1 (MQ=255)

                                                                                aaTCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGa       <  2:868246/91‑1 (MQ=255)

                                                                                  tctctcTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAAt     >  2:1597070/1‑91 (MQ=255)

                                                                                   ctctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATc    <  2:2089905/91‑1 (MQ=255)

                                                                                     ctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATcac  <  1:1554805/91‑1 (MQ=255)

                                                                                     ctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATcac  >  2:717845/1‑91 (MQ=255)

TCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCAC  >  USA300TCH1516_ALE/2696498‑2696673

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.