New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 2696548 =162 (0.920)29 (0.190) 16/160 13.6 16.8% intergenic (+100/‑140) USA300HOU_RS13875/copA hypothetical protein/Copper‑exporting P‑type ATPase A
?USA300TCH1516_ALE 2696587 = 143 (0.920)intergenic (+139/‑101) USA300HOU_RS13875/copA hypothetical protein/Copper‑exporting P‑type ATPase A
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 168 total aligned reads displayed.

GAATTGCAAATCCAGAAGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCT  >  USA300TCH1516_ALE/2696458‑2696638
                                                                                          |                                                                                          
gAATTGCAAATCCAGAAGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTa                                                                                            >  2:1243330/1‑91 (MQ=255)
gAATTGCAAATCCAGAAGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTa                                                                                            <  1:228390/91‑1 (MQ=255)
  aTTGCAAATCCAGAAGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTaga                                                                                          >  1:2528847/1‑91 (MQ=255)
  aTTGCAAATCCAGAAGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTaga                                                                                          <  1:1434807/91‑1 (MQ=255)
  aTTGCAAATCCAGAAGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTaga                                                                                          <  1:2322038/91‑1 (MQ=255)
  aTTGCAAATCCAGAAGTCATTTAAGTTTTACCTGTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTaga                                                                                          <  1:2532477/91‑1 (MQ=255)
   ttGCAAATCCAGAAGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTagag                                                                                         <  1:2599511/91‑1 (MQ=255)
   ttGCAAATCCAGAAGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTagag                                                                                         <  1:1868020/91‑1 (MQ=255)
    tGCAAATCCAGAAGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTagaga                                                                                        >  1:1018651/1‑91 (MQ=255)
     gCAAATCCAGAAGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTagagag                                                                                       >  2:1617205/1‑91 (MQ=255)
     gCAAATCCAGAAGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTagagag                                                                                       >  1:240318/1‑91 (MQ=255)
     gCAAATCCAGAAGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTagagag                                                                                       <  1:2251082/91‑1 (MQ=255)
       aaaTCCAGAAGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGAt                                                                                     >  2:343058/1‑91 (MQ=255)
           ccAGAAGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGAttgtt                                                                                 <  2:2843473/91‑1 (MQ=255)
            cAGAAGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGAttgttg                                                                                <  2:2053776/91‑1 (MQ=255)
            cAGAAGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGAttgttg                                                                                <  1:1571440/91‑1 (MQ=255)
              gAAGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTtgtg                                                                              <  2:2981409/91‑1 (MQ=255)
               aaGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGc                                                                             >  1:1697009/1‑91 (MQ=255)
                aGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCa                                                                            <  1:2087938/91‑1 (MQ=255)
                aGTAATTTAAGTTTTACTTTTCATTGATACATAGTTTAATATTAATTATGAATTTTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCa                                                                            >  2:286691/1‑91 (MQ=255)
                 gTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCaa                                                                           <  2:2227153/91‑1 (MQ=255)
                  tCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAAt                                                                          >  2:1023078/1‑91 (MQ=255)
                    aTTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGt                                                                        <  2:1725400/91‑1 (MQ=255)
                     tttAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGtt                                                                       >  1:2131414/1‑91 (MQ=255)
                       tAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTg                                                                     >  2:2603537/1‑91 (MQ=255)
                         aGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCa                                                                   <  1:1726653/91‑1 (MQ=255)
                         aGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCa                                                                   <  1:2862029/91‑1 (MQ=255)
                         aGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGAATGTTGTGCAATGTTTGCa                                                                   <  1:2863842/91‑1 (MQ=255)
                           ttttACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACg                                                                 <  2:1386623/91‑1 (MQ=255)
                             ttACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACggg                                                               >  2:3079060/1‑90 (MQ=255)
                             ttACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGc                                                               >  2:3079001/1‑91 (MQ=255)
                              tACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCa                                                              >  1:1820460/1‑91 (MQ=255)
                               aCCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCaa                                                             <  1:2730682/91‑1 (MQ=255)
                                ccTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAAt                                                            <  1:1000278/91‑1 (MQ=255)
                                ccTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAAt                                                            <  1:999967/91‑1 (MQ=255)
                                 cTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAAtc                                                           <  2:1654397/91‑1 (MQ=255)
                                 cTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAAtc                                                           <  1:70454/91‑1 (MQ=255)
                                  tttCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAAtct                                                          <  2:2162647/91‑1 (MQ=255)
                                  tttCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAAtct                                                          <  2:2162582/91‑1 (MQ=255)
                                    tcattcatACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGATAGATTGTTGTGCAATGTTTGCACGGCAAtctct                                                        >  1:2754215/1‑91 (MQ=255)
                                     cattcatACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAAtctctc                                                       <  1:630715/91‑1 (MQ=255)
                                     cattcatACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAAtctctc                                                       <  1:538102/91‑1 (MQ=255)
                                        tcatACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtcttt                                                    <  2:2585949/91‑1 (MQ=255)
                                          atACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtcttttt                                                  <  1:2705323/91‑1 (MQ=255)
                                           tACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtctttttc                                                 <  1:2581855/91‑1 (MQ=255)
                                            aCATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtctttttct                                                <  2:924859/91‑1 (MQ=255)
                                            aCATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtctttttct                                                <  2:838923/91‑1 (MQ=255)
                                            aCATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTACACGGCAATCTCtctttttct                                                >  1:2300862/1‑91 (MQ=255)
                                             cATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtctttttctt                                               <  2:916871/91‑1 (MQ=255)
                                              aTCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtctttttcttt                                              <  2:939856/91‑1 (MQ=255)
                                              aTCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtctttttcttt                                              <  2:1526792/91‑1 (MQ=255)
                                               tCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtctttttctttt                                             >  2:307491/1‑91 (MQ=255)
                                               tCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtctttttctttt                                             >  1:1152291/1‑91 (MQ=255)
                                                ccTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTctttttcttttt                                            <  1:774959/91‑1 (MQ=255)
                                                ccTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTctttttcttttt                                            <  1:2218209/91‑1 (MQ=255)
                                                ccTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTctttttcttttt                                            >  1:600329/1‑91 (MQ=255)
                                                    tAATATTAATTACGGCTTCTTTTATATAGATGCTCAGTAGAGGGTTTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTaaaa                                        <  2:2993149/91‑1 (MQ=255)
                                                    tAATATTAATTACGACTTCTTTTATATAGATGCTAAGTATAGAGAGTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTaaaa                                        <  2:1218159/91‑1 (MQ=255)
                                                    tAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTaaaa                                        <  2:744757/91‑1 (MQ=255)
                                                    tAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTaaaa                                        <  1:1414985/91‑1 (MQ=255)
                                                    tAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTaaaa                                        <  2:439610/91‑1 (MQ=255)
                                                     aaTATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAAt                                       <  2:1545051/91‑1 (MQ=255)
                                                     aaTATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAAt                                       >  1:2043347/1‑91 (MQ=255)
                                                            attaCGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGgtaaa                                <  2:1234061/91‑1 (MQ=255)
                                                            attaCGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGgtaaa                                >  2:2346440/1‑91 (MQ=255)
                                                             ttaCGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGgtaaaa                               >  2:2262493/1‑91 (MQ=255)
                                                             ttaCGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGgtaaaa                               >  2:2263894/1‑91 (MQ=255)
                                                              taCGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGgtaaaag                              <  1:276749/91‑1 (MQ=255)
                                                              taCGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGgtaaaag                              >  1:2834010/1‑91 (MQ=255)
                                                               aCGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGgtaaaagt                             <  1:1993204/91‑1 (MQ=255)
                                                                cGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGgtaaaagta                            >  2:2757799/1‑91 (MQ=255)
                                                                  aCTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGgtaaaagtaaa                          >  1:2379605/1‑91 (MQ=255)
                                                                  aCTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTATTAAAATTGgtaaaagtaaa                          >  2:674718/1‑91 (MQ=255)
                                                                   cttcttTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGgtaaaagtaaaa                         <  1:343058/91‑1 (MQ=255)
                                                                     tcttTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACg                       >  2:2034276/1‑91 (MQ=255)
                                                                      cttTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGc                      <  1:134925/91‑1 (MQ=255)
                                                                         ttATATATATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAAc                   <  1:1556014/91‑1 (MQ=255)
                                                                         ttATATAGATGCTAAGTAGAGAGATTGTTGTGCACTGTTTGCACGGCAATCTCTCCTTGTCTTTTTAAAATTGGTAAAAGTAAAACGCAAc                   >  2:265021/1‑91 (MQ=255)
                                                                         ttATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAAc                   <  2:1401747/91‑1 (MQ=255)
                                                                          tatataGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACg                  >  1:1907638/1‑91 (MQ=255)
                                                                          tatataGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACg                  >  2:1837869/1‑91 (MQ=255)
                                                                               aGATGCTAAGTTGAGAGATTGTTGTGCAATGTTTGCACGGCAATTTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGa             <  1:1152999/91‑1 (MQ=255)
                                                                               aGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGa             <  1:398696/91‑1 (MQ=255)
                                                                                gATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGAc            >  2:1494230/1‑91 (MQ=255)
                                                                                 aTGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACt           >  1:2918715/1‑91 (MQ=255)
                                                                                 aTGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACt           >  1:889705/1‑91 (MQ=255)
                                                                                  tGCTAAGTAGTGAGATTGTTGTGCAATGTTTGCACTGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACtt          <  2:878896/91‑1 (MQ=255)
                                                                                  tGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACtt          <  2:2377880/91‑1 (MQ=255)
                                                                                   gCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTta         >  2:1101502/1‑91 (MQ=255)
                                                                                    cTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTtat        <  2:2996916/91‑1 (MQ=255)
                                                                                      aaGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTtatat      >  2:969133/1‑91 (MQ=255)
                                                                                      aaGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTtatat      <  2:176286/91‑1 (MQ=255)
                                                                                       aaaagagagATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTtatata     >  2:2556364/4‑91 (MQ=17)
                                                                                       aaaagagagATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTtatata     >  2:1016608/4‑91 (MQ=17)
                                                                                       aGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTtatata     >  1:1639025/1‑91 (MQ=255)
                                                                                        gTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATAc    >  2:852880/1‑91 (MQ=255)
                                                                                        gTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATAc    <  1:455595/91‑1 (MQ=255)
                                                                                        aaagagagATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATAc    >  1:1407027/3‑91 (MQ=17)
                                                                                         aagagagATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATAcc   >  1:1072366/2‑91 (MQ=18)
                                                                                          agagagATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCt  >  2:2589461/1‑91 (MQ=255)
                                                                                          |                                                                                          
GAATTGCAAATCCAGAAGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCT  >  USA300TCH1516_ALE/2696458‑2696638

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.