BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	75971 =	231 (1.310)	27 (0.190)	15/148	13.0	12.8%	intergenic (+29/‑244)	USA300HOU_RS00335/USA300HOU_RS00140	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	76020 =	177 (1.230)	27 (0.190)	15/148	13.0	12.8%	intergenic (+78/‑195)	USA300HOU_RS00335/USA300HOU_RS00140	hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 234 total aligned reads displayed.

TAGGAGATGTTACACATAAGATTGCTAAAAGAAGTTCTGTCCCAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCTTTTTTATTTTTTTAATAAACGTAATGAATTTAATATAACTAATATT  >  USA300TCH1516_ALE/75881‑76061

tAGGAGATGTTACACATAAGATTGCTAAAAGAAGTTCTGTCCCAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCa                                                                                            >  2:1811809/1‑91 (MQ=255)

 aGGAGATGTTACACATAAGATTGCTAAAAGAAGTTCTGTCCCAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCaa                                                                                           >  1:758168/1‑91 (MQ=255)

 aGGAGATGTTACACATAAGATTGCTAAAAGAAGTTCTGTCCCAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCaa                                                                                           >  1:1210365/1‑91 (MQ=255)

  ggAGATGTTACACATAAGATTTCTAAAAGAAGTTCTGTCCCAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCaaa                                                                                          <  1:33672/91‑1 (MQ=255)

   gagaTGTTACACATAAGATTGCTAAAAGAAGTTCTGTCCCAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCaaaa                                                                                         >  1:525474/1‑91 (MQ=255)

     gaTGTTACACATAAGATTGCTAAAAGAAGTTCTGTCCCAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAg                                                                                       <  1:2224119/91‑1 (MQ=255)

     gaTGTTACACATAAGATTGCTAAAAGAAGTTCTGTCCCAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAg                                                                                       >  2:3045347/1‑91 (MQ=255)

      aTGTTACACATAAGATTGCTAAAAGAAGTTCTGTCCCAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGc                                                                                      >  1:2333428/1‑91 (MQ=255)

          tACACATAAGATTGCTAAAAGAAGTTCTGTCCCAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTaa                                                                                  >  2:705482/1‑91 (MQ=255)

          tACACATAAGATTGCTAAAAGAAGTTCTGTCCCAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTaa                                                                                  >  2:2931905/1‑91 (MQ=255)

           acacATAAGATTGCTAAAAGAAGTTCTGTCCCAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTaaa                                                                                 >  2:1682568/1‑91 (MQ=255)

           acacATAAGATTGCTAAAAGAAGTTCTGTCCCAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTaaa                                                                                 <  2:1444460/91‑1 (MQ=255)

            cacaTAAGATTGCTAAAAGAAGTTCTGTCCCAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAAt                                                                                <  1:2543317/91‑1 (MQ=255)

            cacaTAAGATTGCTAAAAGAAGTTCTGTCCCAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAAt                                                                                >  1:1030435/1‑91 (MQ=255)

             acaTAAGATTGCTAAAAGAAGTTCTGTCCCAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATa                                                                               <  2:915308/91‑1 (MQ=255)

               aTAAGATTGCTAAAAGAAGTTCTGTCCCAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACt                                                                             <  1:1771694/91‑1 (MQ=255)

                 aaGATTGCTAAAAGAAGTTCTGTCCCAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACttt                                                                           <  1:1161066/91‑1 (MQ=255)

                 aaGATTGCTAAAAGAAGTTCTGTCCCAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACttt                                                                           <  2:315806/91‑1 (MQ=255)

                  aGATTGCTAAAAGAAGTTCTGTCCCAGTACTAATTGTTAAATAAACTTAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTtc                                                                          >  1:2463855/1‑91 (MQ=255)

                  aGATTGCTAAAAGAAGTTCTGTCCCAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTtc                                                                          >  1:1194200/1‑91 (MQ=255)

                  aGATTGCTAAAAGAAGTTCTGTCCCAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTtc                                                                          <  1:383454/91‑1 (MQ=255)

                  aGATTGCTAAAAGAAGTTCTGTCCCAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTtc                                                                          >  1:1913758/1‑91 (MQ=255)

                   gATTGCTAAAAGAAGTTCTGTCCCAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTtct                                                                         <  2:2241465/91‑1 (MQ=255)

                    aTTTCTAAACGAAGTTCTGTCCCAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTtctc                                                                        <  1:2783557/91‑1 (MQ=255)

                    aTTGCTAAAAGAAGTTCTGTCCCAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTtctc                                                                        <  1:1037371/91‑1 (MQ=255)

                    aTTGCTAAAAGAAGTTCTGTCCCAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTtctc                                                                        <  1:1464713/91‑1 (MQ=255)

                    aTTGCTAAAAGAAGTTCTGTCCCAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTtctc                                                                        <  1:2005620/91‑1 (MQ=255)

                     ttGCTAAAAGAAGTTCTGTCCCAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTca                                                                       <  2:1293085/91‑1 (MQ=255)

                      tGCTAAAAGAAGTTCTGTCCCAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTcac                                                                      <  2:660640/91‑1 (MQ=255)

                      tGCTAAAAGAAGTTCTGTCCCAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTcac                                                                      <  1:2605655/91‑1 (MQ=255)

                      tGCTAAAAGAAGTTCTGTCCCAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTcac                                                                      <  1:1159795/91‑1 (MQ=255)

                      tGCTAAAAGAAGTTCTGTCCCAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTcac                                                                      >  2:2114736/1‑91 (MQ=255)

                       gCTAAAAGAAGTTCTGTCCCAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAAGTTATTAATTCAAAAAGCCTAAATACTTTCTcaca                                                                     <  1:1668303/91‑1 (MQ=255)

                        cTAAAAGAAGTTCTGTCCCAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTGAAAAAGCCTAAATACTTTCTCACaa                                                                    >  1:2880889/1‑91 (MQ=255)

                         tAAAAGAAGTTCTGTCCCAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACaaa                                                                   >  1:1715324/1‑91 (MQ=255)

                          aaaaGAAGTTCTGTCCCAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAAt                                                                  >  1:2570805/1‑91 (MQ=255)

                           aaaGAAGTTCTGTCCCAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATc                                                                 <  2:765195/91‑1 (MQ=255)

                             agaagTTCTGTCCCAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCga                                                               <  1:1569005/91‑1 (MQ=255)

                              gaagTTCTGTCCCAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCgag                                                              <  1:813120/91‑1 (MQ=255)

                              gaagTTCTGTCCCAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCgag                                                              <  1:1353022/91‑1 (MQ=255)

                               aagTTCTGTCCCAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCgaga                                                             <  2:1083443/91‑1 (MQ=255)

                                agTTCTGTCCCAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCgagag                                                            >  2:1710660/1‑91 (MQ=255)

                                  ttCTGTCCCAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCGagagag                                                          >  2:1469621/1‑91 (MQ=255)

                                    cTGTCCCAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTa                                                        >  2:1739670/1‑91 (MQ=255)

                                    cTGTCCCAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTa                                                        >  2:2280454/1‑91 (MQ=255)

                                    cTGTCCCAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTa                                                        >  1:557403/1‑91 (MQ=255)

                                         ccAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCGAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAg                                                   <  1:2683213/91‑1 (MQ=255)

                                         ccAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAg                                                   >  2:3079565/1‑91 (MQ=255)

                                          cAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAgg                                                  <  1:962515/91‑1 (MQ=255)

                                          cAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAgg                                                  <  1:963650/91‑1 (MQ=255)

                                           aGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGc                                                 >  2:2551423/1‑91 (MQ=255)

                                             tACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCtt                                               >  1:2061765/1‑91 (MQ=255)

                                             tACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCtt                                               >  2:2676965/1‑91 (MQ=255)

                                             tACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCtt                                               >  2:909069/1‑91 (MQ=255)

                                              aCTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCttt                                              <  2:2032791/91‑1 (MQ=255)

                                              aCTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCttt                                              <  1:1077021/91‑1 (MQ=255)

                                               cTAATTGTTATATGAACATTAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAAGACTTTCTCACAAATCGAGAGAGTATTTAGGCtttt                                             <  1:1374798/91‑1 (MQ=255)

                                               cTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCtttt                                             <  2:612341/91‑1 (MQ=255)

                                               cTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCtttt                                             >  2:1832759/1‑91 (MQ=255)

                                                tAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCttttt                                            <  1:2764228/91‑1 (MQ=255)

                                                 aaTTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCtttttt                                           <  1:2828236/91‑1 (MQ=255)

                                                  aTTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCTTTTTTa                                          >  1:2159227/1‑91 (MQ=255)

                                                    tGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCTTTTTTAtt                                        >  1:3034798/1‑91 (MQ=255)

                                                      ttAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCTTTTTTAtttt                                      <  1:793141/91‑1 (MQ=255)

                                                        aaataaaCATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCTTTTTTAtttttt                                    >  1:2313408/1‑91 (MQ=255)

                                                           taaaCATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCTTTTTTATTTTTTtaa                                 <  2:2486978/91‑1 (MQ=255)

                                                           taaaCATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCTTTTTTATTTTTTtaa                                 >  1:265209/1‑91 (MQ=255)

                                                           taaaCATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCTTTTTTATTTTTTtaa                                 >  1:1860861/1‑91 (MQ=255)

                                                             aaCATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCTTTTTTATTTTTTtaata                               >  1:2982038/1‑91 (MQ=255)

                                                               cATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCTTTTTTATTTTTTTAATaaa                             >  1:2705221/1‑91 (MQ=255)

                                                                aTAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCTTTTTTATTTTTTTAATAAAc                            <  1:336317/91‑1 (MQ=255)

                                                                 tAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCTTTTTTATTTTTTTAATAAACg                           >  2:1183449/1‑91 (MQ=255)

                                                                 tAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCTTTTTTATTTTTTTAATAAACg                           <  1:2080668/91‑1 (MQ=255)

                                                                  aagaagTAAGAAAATTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCAAGAGAGTATTTAGACTTATTTATTTTTTTAATATACGt                          >  2:2670476/1‑91 (MQ=255)

                                                                   agaagTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCTCTTTTATTTTTTTAATAAACGTa                         >  2:2208234/1‑91 (MQ=255)

                                                                     aagTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCTTTTTTATTTTTTTAATAAACGTAAt                       >  1:968326/1‑91 (MQ=255)

                                                                       gTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCTTTTTTATTTTTTTAATAAACGTAATGa                     >  2:1584391/1‑91 (MQ=255)

                                                                       gTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCTTTTTTATTTTTTTAATAAACGTAATGa                     >  2:1356062/1‑91 (MQ=255)

                                                                       gTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCTTTTTTATTTTTTTAATAAACGTAATGa                     <  1:1254212/91‑1 (MQ=255)

                                                                       gTAAGAAATTTATTAACTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCTTTTTTATTTTTTTAATAAACGTAATGa                     <  2:2966174/91‑1 (MQ=255)

                                                                         aaGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCTTTTTTATTTTTTTAATAAACGTAATGAAt                   >  1:31871/1‑91 (MQ=255)

                                                                         aaGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCTTTTTTATTTTTTTAATAAACGTAATGAAt                   <  2:1913758/91‑1 (MQ=255)

                                                                         aaGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCTTTTTTATTTTTTTAATAAACGTAATGAAt                   <  2:2463855/91‑1 (MQ=255)

                                                                         aaGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCTTTTTTATTTTTTTAATAAACGTAACGAAt                   <  2:533091/91‑1 (MQ=255)

                                                                          aGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCTTTTTTATTTTTTTAATAAACGTAATGAAtt                  >  2:2932207/1‑91 (MQ=255)

                                                                          aGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCTTTTTTATTTTTTTAATAAACGTAATGAAtt                  <  2:1065773/91‑1 (MQ=255)

                                                                           gAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCTTTTTTATTTTTTTAATAAACGTAATGAAttt                 >  2:545720/1‑91 (MQ=255)

                                                                             aaTTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCTTTTTTATTTTTTTAATAAACGTAATGAATTTaa               >  2:1637620/1‑91 (MQ=255)

                                                                             aaTTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCTTTTTTATTTTTTTAATAAACGTAATGAATTTaa               >  2:389959/1‑91 (MQ=255)

                                                                              aTTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCTTTTTTATTTTTTTAATAAACGTAATGAATTTAat              >  1:3083025/1‑91 (MQ=255)

                                                                                 tattaATTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCTTTTTTAttttttt                                   <  2:2107839/67‑1 (MQ=255)

                                                                                 tattaATTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCTTTTTTAttttttt                                   >  1:2107839/1‑67 (MQ=255)

                                                                                     aaTTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCTTTTTTATTTTTTTAATAAACGTAATGAATTTAATATAACTa       >  2:2773284/1‑91 (MQ=255)

                                                                                     aaTTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCTTTTTTATTTTTTTAATAAACGTAATGAATTTAATATAACTa       >  1:2654678/1‑91 (MQ=255)

                                                                                     aaTTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCTTTTTTATTTTTTTAATAAACGTAATGAATTTAATATAACTa       <  1:114805/91‑1 (MQ=255)

                                                                                      aTTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCTTTTTTATTTTTTTAATAAACGTAATGAATTTAATATAACTaa      <  2:358796/91‑1 (MQ=255)

                                                                                      aTTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCTTTTTTATTTTTTTAATAAACGTAATGAATTTAATATAACTaa      <  1:365219/91‑1 (MQ=255)

                                                                                        taaaaaaGCCTAAATACTCTCTCGATTTGTGAGAAAGTATTTAGGCTTTTTTATTTTTTTAATAAACGTAATGAATTTAATATAACTAata    >  1:1327118/3‑91 (MQ=14)

                                                                                        tCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCTTTTTTATTTTTTTAATAAACGTAATGAATTTAATATAACTAata    >  2:418169/1‑91 (MQ=255)

                                                                                          aaaaaGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCTTTTTTATTTTTTTAATAAACGTAATGAATTTAATATAACTAATAtt  <  1:800299/91‑1 (MQ=255)

TAGGAGATGTTACACATAAGATTGCTAAAAGAAGTTCTGTCCCAGTACTAATTGTTAAATAAACATAAGAAGTAAGAAATTTATTAATTCAAAAAGCCTAAATACTTTCTCACAAATCGAGAGAGTATTTAGGCTTTTTTATTTTTTTAATAAACGTAATGAATTTAATATAACTAATATT  >  USA300TCH1516_ALE/75881‑76061

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.