BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	932460 =	183 (1.040)	21 (0.140)	18/156	12.3	11.3%	intergenic (+6/+257)	USA300HOU_RS04635/nfuA	hypothetical protein/Fe/S biogenesis protein NfuA
*	?	USA300TCH1516_ALE	932506 =	172 (1.130)	21 (0.140)	18/156	12.3	11.3%	intergenic (+52/+211)	USA300HOU_RS04635/nfuA	hypothetical protein/Fe/S biogenesis protein NfuA
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 183 total aligned reads displayed.

GAAAGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGG  >  USA300TCH1516_ALE/932370‑932549

     gTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAg                                                                                      >  1:920654/1‑91 (MQ=255)

     gTTGGGATAATATGGATGAGCAAATAGCGAAACATAAGAAAGGAGAACCACAACCAGAAGTAGATAAACCTAAAAATTAAAATACAAATaa                                                                                      >  2:1044421/1‑90 (MQ=255)

      ttGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGc                                                                                     >  2:442916/1‑91 (MQ=255)

      ttGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGc                                                                                     >  1:2167385/1‑91 (MQ=255)

       tGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGca                                                                                    <  2:1622171/91‑1 (MQ=255)

       tGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGca                                                                                    <  2:248285/91‑1 (MQ=255)

         ggTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGcaca                                                                                  <  2:2487177/91‑1 (MQ=255)

          gTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACAt                                                                                 >  2:358809/1‑91 (MQ=255)

          gTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACAt                                                                                 >  2:404397/1‑91 (MQ=255)

          gTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACAt                                                                                 >  1:2338195/1‑91 (MQ=255)

             tataTGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAAc                                                                              <  1:1112748/91‑1 (MQ=255)

             tataTGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAAc                                                                              <  1:456508/91‑1 (MQ=255)

               tatGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTc                                                                            >  2:2312265/1‑91 (MQ=255)

                  ggATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAAc                                                                         >  1:339915/1‑91 (MQ=255)

                   gATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACg                                                                        >  1:1328787/1‑91 (MQ=255)

                   gATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACg                                                                        >  1:1328911/1‑91 (MQ=255)

                      gAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGAtt                                                                     <  1:2392595/91‑1 (MQ=255)

                      gAGCAAATAGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTCAAATACAAATAGCACATAACTCAACGAtt                                                                     <  2:2693392/91‑1 (MQ=255)

                       aGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGAttt                                                                    >  1:796152/1‑91 (MQ=255)

                       aGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGAttt                                                                    <  1:1733285/91‑1 (MQ=255)

                             ttGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTttgattg                                                              >  1:1010943/1‑91 (MQ=255)

                              tGCGAAACATATGAAAGGTGAACCACATCCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTttgattga                                                             <  2:694000/91‑1 (MQ=255)

                              tGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTttgattga                                                             <  1:1842842/91‑1 (MQ=255)

                               gCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAg                                                            >  2:1318344/1‑91 (MQ=255)

                                 gAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCg                                                          >  1:776640/1‑91 (MQ=255)

                                  aaaCATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGt                                                         >  2:1754584/1‑91 (MQ=255)

                                  aaaCATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGt                                                         <  1:2198981/91‑1 (MQ=255)

                                  aaaCATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGt                                                         >  2:1877805/1‑91 (MQ=255)

                                    aCATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTAt                                                       <  1:43463/91‑1 (MQ=255)

                                    aCATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTAt                                                       <  2:2239538/91‑1 (MQ=255)

                                    aCATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTAt                                                       <  2:635251/91‑1 (MQ=255)

                                    aCATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGAGTGAGCGTAt                                                       <  1:1559230/91‑1 (MQ=255)

                                      atatGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTAtgt                                                     >  1:2972721/1‑91 (MQ=255)

                                      atatGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTAtgt                                                     >  1:1463564/1‑91 (MQ=255)

                                        atGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGc                                                   >  2:1920358/1‑91 (MQ=255)

                                        atGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGc                                                   <  1:167191/91‑1 (MQ=255)

                                         tGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCt                                                  <  2:882090/91‑1 (MQ=255)

                                         tGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCt                                                  >  1:669191/1‑91 (MQ=255)

                                         tGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCt                                                  >  2:2799463/1‑91 (MQ=255)

                                          gAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTa                                                 >  2:1395306/1‑91 (MQ=255)

                                          gAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTa                                                 <  1:569016/91‑1 (MQ=255)

                                           aaaGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTAt                                                >  1:440618/1‑91 (MQ=255)

                                             aGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTAttt                                              <  1:965644/91‑1 (MQ=255)

                                               gTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTAttttt                                            <  1:932292/91‑1 (MQ=255)

                                               gTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTAttttt                                            >  1:1314984/1‑91 (MQ=255)

                                               gTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTAttttt                                            >  2:2931454/1‑91 (MQ=255)

                                                tGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTta                                           <  1:1474535/91‑1 (MQ=255)

                                                 gAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTatat                                          >  1:2786178/1‑91 (MQ=255)

                                                  aaCCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTtata                                         <  1:1956911/91‑1 (MQ=255)

                                                    ccACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATAtt                                       <  1:2088408/91‑1 (MQ=255)

                                                    ccACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATAtt                                       <  1:2541737/91‑1 (MQ=255)

                                                     cacaACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATAttt                                      <  1:711720/91‑1 (MQ=255)

                                                      acaACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATAtttt                                     <  1:2378503/91‑1 (MQ=255)

                                                       caACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAGCGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTa                                    >  1:2627490/1‑91 (MQ=255)

                                                       caACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTa                                    >  2:2067998/1‑91 (MQ=255)

                                                       caACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTa                                    >  1:2693995/1‑91 (MQ=255)

                                                        aaCCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTaa                                   >  2:3092203/1‑91 (MQ=255)

                                                        aaCCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTaa                                   >  1:1794261/1‑91 (MQ=255)

                                                         aCCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTaaa                                  >  2:2202130/1‑91 (MQ=255)

                                                         aCCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTaaa                                  >  2:1275349/1‑91 (MQ=255)

                                                         aCCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTaaa                                  >  2:1718587/1‑91 (MQ=255)

                                                           cTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAAtt                                <  2:1738857/91‑1 (MQ=255)

                                                             gAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTc                              >  1:1030442/1‑91 (MQ=255)

                                                              aaGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCa                             >  2:2350042/1‑91 (MQ=255)

                                                               aGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCat                            >  2:1485098/1‑91 (MQ=255)

                                                                  aGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCataga                         <  1:1762478/91‑1 (MQ=255)

                                                                     tAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCatagaata                      <  1:523351/91‑1 (MQ=255)

                                                                      aaaCCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCatagaatag                     >  1:2556437/1‑91 (MQ=255)

                                                                       aaCCTAAAAATTAAGATACAAATAGCACATAACTCAACGATTTTGATTTAGCGTATGTGCTATTTTTATATTTTAAATTTCatagaataga                    <  2:2257048/91‑1 (MQ=255)

                                                                       aaCCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCatagaataga                    <  2:2257015/91‑1 (MQ=255)

                                                                        acatAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCAtagaatagaa                   <  2:556682/88‑1 (MQ=255)

                                                                        aCCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCAtagaatagaa                   <  1:2142996/91‑1 (MQ=255)

                                                                        aCCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCAtagaatagaa                   <  2:2433491/91‑1 (MQ=255)

                                                                         ccTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATagaatagaat                  >  1:510894/1‑91 (MQ=255)

                                                                         ccTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATagaatagaat                  <  2:2183264/91‑1 (MQ=255)

                                                                            aaaaaTTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGTTATTTTTATATTTTAAATTTCATAGAATAGAATAGt               >  2:163269/1‑91 (MQ=255)

                                                                             aaaaTTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTa              >  1:2353071/1‑91 (MQ=255)

                                                                             aaaaTTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTa              >  1:2030283/1‑91 (MQ=255)

                                                                             aaaaTTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTa              >  1:1287983/1‑91 (MQ=255)

                                                                              aaaTTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTaa             <  2:892144/91‑1 (MQ=255)

                                                                              aaaTTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTaa             <  2:1614186/91‑1 (MQ=255)

                                                                              aaaTTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTaa             >  1:2802595/1‑91 (MQ=255)

                                                                               aaTTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAat            <  1:2187165/91‑1 (MQ=255)

                                                                                aTTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAata           <  2:460361/91‑1 (MQ=255)

                                                                                  tAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAAtt                                >  2:787497/1‑68 (MQ=255)

                                                                                  tAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAAtt                                <  1:787497/68‑1 (MQ=255)

                                                                                  tAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATAtg         <  2:770268/91‑1 (MQ=255)

                                                                                  tAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATAtg         <  1:248538/91‑1 (MQ=255)

                                                                                   aaaaTACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATAtgt        <  1:2937939/91‑1 (MQ=255)

                                                                                     aaTACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGc      >  1:744245/1‑91 (MQ=255)

                                                                                      aTACAAATAGCACATAACTCAACGATTTTTTTTTAGTTTTTGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCt     >  2:179667/1‑91 (MQ=255)

                                                                                      aTACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCt     >  2:197058/1‑91 (MQ=255)

                                                                                        aCAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTg   <  2:2185922/91‑1 (MQ=255)

                                                                                        aCAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTg   <  1:212222/91‑1 (MQ=255)

                                                                                        aCAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTg   >  1:2420512/1‑91 (MQ=255)

                                                                                        aCAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTg   <  2:110744/91‑1 (MQ=255)

                                                                                        aCAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTg   <  2:2587361/91‑1 (MQ=255)

                                                                                         cAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTgg  <  1:667698/91‑1 (MQ=255)

                                                                                         cAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTgg  <  1:667732/91‑1 (MQ=255)

                                                                                         cAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTgg  <  2:2344088/91‑1 (MQ=255)

GAAAGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGG  >  USA300TCH1516_ALE/932370‑932549

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.