| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2661788 = | 196 (1.110) | 26 (0.180) | 16/148 | 12.6 | 14.1% | intergenic (‑181/‑140) | ybiV/yydI | Sugar phosphatase YbiV/putative peptide export ATP‑binding protein YydI |
| ? | USA300TCH1516_ALE | 2661832 = | 157 (1.090) | intergenic (‑225/‑96) | ybiV/yydI | Sugar phosphatase YbiV/putative peptide export ATP‑binding protein YydI | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 196 total aligned reads displayed.
TCACATTTTGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAAT > USA300TCH1516_ALE/2661698‑2661877 | tCACATTTTGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTaaaaa < 1:2241178/91‑1 (MQ=255) cacaTTTTGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAat > 2:1654027/1‑91 (MQ=255) cacaTTTTGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAat < 1:1158069/91‑1 (MQ=255) acaTTTTGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAata > 1:2650367/1‑91 (MQ=255) caTTTTGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAatat > 1:512879/1‑91 (MQ=255) aTTTTGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATc < 2:1190081/91‑1 (MQ=255) ttttGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATca > 2:2828849/1‑91 (MQ=255) ttttGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATca > 1:2804646/1‑91 (MQ=255) tttGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATcac < 2:1242540/91‑1 (MQ=255) tttGAAATTGCTTGCATATATGCAAAACACATTACACTGGATAGAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATcac < 1:3105235/91‑1 (MQ=255) tGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCacac < 1:1016149/91‑1 (MQ=255) tGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCacac < 2:1609719/91‑1 (MQ=255) gAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACt > 2:1662108/1‑91 (MQ=255) aaaTTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACta > 2:2225231/1‑91 (MQ=255) aaaTTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACta > 1:1511160/1‑91 (MQ=255) aaaTAGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACta > 1:2447064/1‑91 (MQ=255) aaTTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACtat > 1:3015165/1‑91 (MQ=255) aaTTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACtat > 2:2472027/1‑91 (MQ=255) aaTTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACtat > 1:2571259/1‑91 (MQ=255) aTTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACtata < 1:368188/91‑1 (MQ=255) ttGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTatat < 2:732566/91‑1 (MQ=255) ttGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTatat > 1:1455319/1‑91 (MQ=255) ttGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTatat < 2:2270015/91‑1 (MQ=255) tGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATAtt < 2:3032559/91‑1 (MQ=255) gCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATAttt < 2:720658/91‑1 (MQ=255) cTTTCATGTATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTa < 1:1541167/91‑1 (MQ=255) cTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTa < 1:1255476/91‑1 (MQ=255) ttCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATc < 1:2075397/91‑1 (MQ=255) tCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCa > 2:26064/1‑91 (MQ=255) atatatGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCAtt > 2:2910358/1‑91 (MQ=255) tatatGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCAttt < 1:171198/91‑1 (MQ=255) tGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGAc > 1:2720096/1‑91 (MQ=255) tGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGAc > 1:2384485/1‑91 (MQ=255) tGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGAc > 2:2024621/1‑91 (MQ=255) aaaaCACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACaaa > 1:274166/1‑91 (MQ=255) aaaaCACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACaaa < 1:2003538/91‑1 (MQ=255) aaaCACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACaaaa > 1:1200173/1‑91 (MQ=255) cacaTTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCGGAATATTGTAAAAATATCACTCTATATTTATCATTTAGACAAAatat < 2:1944486/91‑1 (MQ=255) acaTTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAAtata > 2:2526830/1‑91 (MQ=255) acaTTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAAtata > 2:2821796/1‑91 (MQ=255) acaTTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTCATCATTTAGACAAAAtata > 2:894186/1‑91 (MQ=255) caTTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAg < 2:551811/91‑1 (MQ=255) aTTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAgt > 1:2598058/1‑91 (MQ=255) aTTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAgt < 1:648940/91‑1 (MQ=255) aTTACACT‑GATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAgtg > 2:2164705/1‑91 (MQ=255) tACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAgtgt > 2:68179/1‑91 (MQ=255) acacTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGtgtg > 1:576079/1‑91 (MQ=255) cacTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGa < 2:1668521/91‑1 (MQ=255) cacTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGa < 1:1910457/91‑1 (MQ=255) acTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGat > 2:1863950/1‑91 (MQ=255) cTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGata > 2:825415/1‑91 (MQ=255) ggATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGAtata < 1:263247/91‑1 (MQ=255) ggATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGAtata < 1:262899/91‑1 (MQ=255) atatAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACt < 1:1005832/91‑1 (MQ=255) atatAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACt < 1:628311/91‑1 (MQ=255) tataGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTa > 2:275050/1‑91 (MQ=255) ataGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTaa < 1:1048302/91‑1 (MQ=255) taGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAAt > 1:2137203/1‑91 (MQ=255) aGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAAtt > 1:2304687/1‑91 (MQ=255) gCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAAttt > 2:2155490/1‑91 (MQ=255) cATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTta > 2:3086730/1‑91 (MQ=255) cATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTta > 2:44775/1‑91 (MQ=255) cATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTta > 2:44922/1‑91 (MQ=255) cATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTta > 2:44975/1‑91 (MQ=255) aTTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTtat < 2:3044289/91‑1 (MQ=255) cAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAAc < 1:2516728/91‑1 (MQ=255) cAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAAc > 1:1329750/1‑91 (MQ=255) gagGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACAt > 1:1968771/1‑91 (MQ=255) agGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATc > 2:1322779/1‑91 (MQ=255) agGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATc > 2:2598779/1‑91 (MQ=255) ggCGAACATAAATTTCAGAATATTGTAAAAATATCACAATATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCt > 2:909432/1‑91 (MQ=255) gCGAACATAAATTTCAGAACATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCta > 2:993300/1‑91 (MQ=255) cGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCtat < 1:317219/91‑1 (MQ=255) cGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCtat > 1:1350960/1‑91 (MQ=255) cGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCtat > 2:1611906/1‑91 (MQ=255) aaCATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATAc > 1:2023760/1‑91 (MQ=255) aCATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACa > 2:1085061/1‑91 (MQ=255) cATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACAt > 2:1092641/1‑91 (MQ=255) cATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACAt < 1:1988382/91‑1 (MQ=255) aaaTTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAAt > 2:2405302/1‑91 (MQ=255) aaTTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAAtg > 2:1575355/1‑91 (MQ=255) tttCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAAtgtg > 1:2845789/1‑91 (MQ=255) ttCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGa < 2:2435577/91‑1 (MQ=255) ttCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGa < 2:1284019/91‑1 (MQ=255) ttCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGa > 2:1525259/1‑91 (MQ=255) tCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGaa > 2:574070/1‑91 (MQ=255) aGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAg > 2:1884984/1‑91 (MQ=255) aGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAg < 2:1485816/91‑1 (MQ=255) gAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGa > 1:1813156/1‑91 (MQ=255) aaTATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGaa > 2:403326/1‑91 (MQ=255) atatTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAAt > 2:3029239/1‑91 (MQ=255) tatTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATATCATCTATACATAATGTGAAAGAAtt > 1:2871430/1‑91 (MQ=255) atTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAAttt > 2:467970/1‑91 (MQ=255) ttGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAAtttt < 1:2917890/91‑1 (MQ=255) ttGTAAAAATATCACACTATATCTATCATTTAGACAAAATATAGTGTGAGATACTAATTTATAACATCTATACATAATGTGAAAGAAtttt < 2:2356991/91‑1 (MQ=255) tGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAAttttt > 1:703741/1‑91 (MQ=255) gTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTa > 1:849248/1‑91 (MQ=255) tAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTaa > 2:374127/1‑91 (MQ=255) aaaaTATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTaaaa > 1:2198742/1‑91 (MQ=255) aaTATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAAt > 2:2128520/1‑91 (MQ=255) | TCACATTTTGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGACAAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAAT > USA300TCH1516_ALE/2661698‑2661877 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |