New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2082368 =	80 (1.240)	3 (0.050)	3/238	NT	4.0%	intergenic (+9/+315)	aspC/USA300HOU_RS10520	Aspartate aminotransferase/65 kDa membrane protein
	?	USA300TCH1516_ALE	2082406 =	72 (1.220)					intergenic (+47/+277)	aspC/USA300HOU_RS10520	Aspartate aminotransferase/65 kDa membrane protein
Rejected: Frequency below/above cutoff threshold.

TTTGATTTTGTTAGGAGAGATGTATAAAACTAATTAGGTATAGTGTTTGACAAGTTGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGATTATTGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  USA300TCH1516_ALE/2082518‑2082368 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gattattggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAA  >  USA300TCH1516_ALE/2082406‑2082542                                                                                                                                                                                                                                                                                                  TTTGATTTTGTTAGGAGAGATGTATAAAACTAATTAGGTATAGTGTTTGACAAGTTGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAG                                                                                                                                                     >  2:196939/1‑141    ttTTTTTTTTGGAGAGATGTATAAAACTGATTAGGTATGGTGTTTGACAGGTTGCTGAATAAAATATATCTTATGATACTTTGAAAGATGGTGTAATTTTAAAAATAAAAAACCAATAATCCGAGTGATACTCATCAGATT                                                                                                                                                  >  2:225769/3‑141     ATTTTGTTAGGAGAGATGTATAAAACTAATTAGGTATAGTGTTTGACAAGTTGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGATTA                                                                                                                                                 >  2:632788/1‑141      TTTTGTTAGGAGAGATGTACAAAACTAATTAGGTATAGTGTTTGACAAGTTGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGATTAT                                                                                                                                                >  1:463511/1‑141       TTTGTTAGGAGAGATGTATAAAACTAATTAGGTATAGTGTTTGACAAGTTGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGATTATT                                                                                                                                               >  2:201398/1‑141                                       TATAGTGTTTGACAAGTTGCTGAATAAAATATATCTTATGATACTTTGAAAGAATGAATAATTTTAAAAATAAAAAACCAATAATCCGCGGCATACTCATCAGATGATGAGTATTTTATGTTTAAAATAATAGCTTCTTTC                                                                                                               >  1:92474/1‑141                                       TATAGTGTTTGACAAGTTGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTt                                                                                                               >  2:92474/1‑140                                                                                        AAGAAGGAATAATTTTAAAAATTAAAAACATTTCATCCATGTCTAACTCATCATATTATTGGTTTTGTATTTTTAAAATTATTCCTACTTTCAAAGGATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACC                                                              <  2:644933/141‑1                                                                                                                                                TATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGT      <  1:581802/141‑1                                                                                                                                                TATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGT      <  2:75889/141‑1                                                                                                                                                  TTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCTACTTGTCAAACACTATACCTAATTAGTTTTATACATCACTCCTAACAAAGTCAAAAAATCGGACAGATGAAAAGTAA    <  2:231413/141‑1                                                                                                                                                   TGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAA   <  1:354091/141‑1                                                                                                                                                   TGGTTTTTTATTTTAAAAATTATTCCTTCCTTCAAAGTACCAAAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGGTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAA   <  1:65363/141‑1                                                                                                                                                    GGTTTTTTTTTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAA  <  1:710812/141‑1                                                                                                                                                                                                                                                                                                  TTTGATTTTGTTAGGAGAGATGTATAAAACTAATTAGGTATAGTGTTTGACAAGTTGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGATTATTGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  USA300TCH1516_ALE/2082518‑2082368 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gattattggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAA  >  USA300TCH1516_ALE/2082406‑2082542

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.