| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2440041 = | 105 (0.810) | 4 (0.030) | 4/270 | 9.1 | 3.8% | intergenic (+2/+64) | USA300HOU_RS12570/malP | hypothetical protein/PTS system maltose‑specific EIICB component |
| ? | USA300TCH1516_ALE | 2440099 = | 106 (0.890) | intergenic (+60/+6) | USA300HOU_RS12570/malP | hypothetical protein/PTS system maltose‑specific EIICB component | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGTATCCAAGTTGTAGTAGGTATGACAGTACCACAAGTTCGTGAAGCATTTGAACAAATGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2440194‑2440041‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgtgtcttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTGAAATATTC > USA300TCH1516_ALE/2440099‑2440245 AGTATCCAAGTTGTAGTAGGTATGACAGTACCACAAGTTCGTGAAGCATTTGAACAAATGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTG > 2:714695/1‑148 ATCCAAGTTGTAGTAGGTATGACAGTACCACAAGTTCGTGAAGCATTTGAACAAATGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCT < 1:346567/148‑1 ATCCAAGTTGTAGTAGGTATGACACTACCACAAGTTCGTGAAGCATTTGAACAAATGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCT < 1:505020/148‑1 TCCAAGTTGTAGTAGTTATGACAGTACCACAAGTTCGTGAAGCATTTGAACAAATGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTT > 1:886554/1‑148 TCCAAGTTGTAGTAGGTATGACAGTACCACAAGTTCGTGACGAATTTGAACAACTGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTT < 2:639972/148‑1 TCCAAGTTGTAGTAGGTATGACAGTACCACAAGTTCGTGAAGCATTTGAACAAATGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCTTTGTAAATGATCATCGTATA‑‑GATGTGTCTT < 2:1029260/148‑1 TCCAAGTTGTAGTAGGTATGACAGTACCACAAGTTCGTGAAGCATTTGAACAAATGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTT < 1:144897/148‑1 TCCAAGTTGTAGTAGGTATGACAGTACCACAAGTTCGTGAAGCATTTGAACAAATGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTT < 2:423957/148‑1 TCCAAGTTGTAGTAGGTATGACAGTACCACAAGTTCGTGAAGCATTTGAACAAATGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTT > 1:824842/1‑148 TCCAAGTTGTAGTAGGTATGACAGTACCACAAGTTCGTGAAGCATTTGAACAAATGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATAATCGTATA‑‑GATGTGTCTT > 2:2716/1‑148 TCCAAGTTGGAGTAGGTATGACAGTACCACAAGTTCGTGAAGCATTTGAACAAATGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTT < 1:889993/148‑1 aAAGTTGTAGTAGGTAAGACAGTACCACAAGTTCGTGAAGCATTTGAACAAATGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTTTT < 2:373011/147‑1 CAAGTTGTAGTAGGTATGACAGTACCACAAGTTCGTGAAGAATTTGAACAATTGGGTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATTCGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTTTT < 1:1289651/148‑1 AGCATTTGAACAAATGGTTGAGGATCAATCGTCCGAAGCTAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATAATC‑GCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGTACGATTGATCCTCAACC > 2:243181/1‑148 ACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACTAACTTTTGTTACTGTCTTACCTACTACA > 2:292949/1‑148 AAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGA > 2:1177738/1‑148 TCGTATA‑‑GATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTG < 1:1177738/148‑1 GATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGC > 1:221382/1‑148 GATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTGGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGC > 2:704442/1‑148 ATGTGTCTTTGTTTGTATTATTTATCTTCGGAGCATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGTATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCG < 2:38800/148‑1 TGTTTCTTTTTTTTTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGT < 2:625363/148‑1 TGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGT < 2:411278/148‑1 TGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTGA < 2:37174/148‑1 TGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTGA < 1:398596/148‑1 GTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTGAA < 1:37222/148‑1 GTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTGAA > 1:1244310/1‑148 GTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTGAA > 1:293644/1‑148 GTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTGAA > 1:829006/1‑148 GTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTGAA > 1:379321/1‑148 GTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCATTGTGCCATTTGTGGATGCTTGAA > 2:1252164/1‑148 GTCTTTTTTTGTATTATTTATATTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACATACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCAATTTGTTGATGCGTGAA > 1:464008/1‑148 CTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGCTACTCTTACCACTCTTTACTAATCCGTGTGCCAGTTGTTGATGAGTGAAAT > 2:320960/1‑148 TTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTGAAATAT > 1:364721/1‑148 TTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCACATGCTTCCCGAACGTGGGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTGAAATATT < 1:1385330/148‑1 TTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTGAAATATTC < 1:1376768/148‑1 TTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCACCTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTGAAATATTC < 1:674489/148‑1 AGTATCCAAGTTGTAGTAGGTATGACAGTACCACAAGTTCGTGAAGCATTTGAACAAATGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2440194‑2440041‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgtgtcttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTGAAATATTC > USA300TCH1516_ALE/2440099‑2440245 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |