New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 2440041 =105 (0.810)4 (0.030) 4/270 9.1 3.8% intergenic (+2/+64) USA300HOU_RS12570/malP hypothetical protein/PTS system maltose‑specific EIICB component
?USA300TCH1516_ALE 2440099 = 106 (0.890)intergenic (+60/+6) USA300HOU_RS12570/malP hypothetical protein/PTS system maltose‑specific EIICB component
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 108 total aligned reads displayed.

CTTATACGTTGAATAAGTCTCATGCACATATTATATGTACGCCAGAAATATTTGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTG  >  USA300TCH1516_ALE/2439894‑2440188
                                                                                                                                                   |                                                                                                                                                   
 ttATACGTTGAATAAGTCTCATGCACAGATTATATGTACGCCAGAAATATTTGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCAtaataa                                                                                                                                                    <  1:1081091/148‑1 (MQ=255)
      cGTTGAATAAGTCTCATGCACATATTATATGTACGCCAGAAATATTTGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGac                                                                                                                                               <  1:106090/148‑1 (MQ=255)
      cGTTGAATAAGTCTCATGCACATATTATATGTACGCCAGAAATATTTGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGac                                                                                                                                               <  2:1099238/148‑1 (MQ=255)
       gTTGAATAAGTCTCATGCACATATTATATGTACGCCAGAAATATTTGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATCGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAACGaca                                                                                                                                              >  1:741160/1‑148 (MQ=255)
       gTTGAATAAGTCTCATGCACATATTATATGTACGCCAGAAATATTTGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGaca                                                                                                                                              <  1:23608/148‑1 (MQ=255)
       gTTGAATAAGTCTCATGCACATATTATATGTACGCCAGAAATATTTGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGaca                                                                                                                                              <  2:822620/148‑1 (MQ=255)
       gTTGAATAAGTCTCATGCACATATTATATGTACGCCAGAAATATTTGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGaaa                                                                                                                                              >  1:6564/1‑146 (MQ=255)
           aaTAAGTCTCATGCACATATTATATGTACGCCAGAAATATTTGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATc                                                                                                                                          >  1:1096624/1‑148 (MQ=255)
           aaTAAGTCTCATGCACATATTATATGTACGCCAGAAATATTTGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATc                                                                                                                                          <  1:1339833/148‑1 (MQ=255)
           aaTAAGTCTCATGCACATATTATATGTACGCCAGAAATATTTGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATc                                                                                                                                          <  2:1140888/148‑1 (MQ=255)
             tgaGTCTCATGCAGATATTATATGCCCGCGAGAAATATTTGCTAGCTTGTCGCATACGACTGCAACTAGAACTATCGACATGCTAGCGGCCAAGTATAGATCGTCATGTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCta                                                                                                                                        <  2:679717/146‑1 (MQ=255)
             tAAGTCTCATGCACATATTATATGTACGCCAGAAATATTTGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCta                                                                                                                                        >  1:521196/1‑148 (MQ=255)
                  ctcATGCACATATTATATGTACGCCAGAAATATTTGCTAAATTGTTACATACGATCGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATAAga                                                                                                                                   >  1:1411135/1‑148 (MQ=255)
                   tcATGCACATATTATATGTACGCCAGAAATATTTGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACgat                                                                                                                                  <  1:111691/148‑1 (MQ=255)
                      tGCACATATTATATGTACGCCAGAAATATTTGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACgatgat                                                                                                                               >  2:881021/1‑148 (MQ=255)
                      tGCACATATTATATGTACGCCAGAAATATTGGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGCCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACgatgat                                                                                                                               <  2:381679/148‑1 (MQ=255)
                        cacaTATTATATGTACGCCAGAAATATTTGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCa                                                                                                                             >  1:714695/1‑148 (MQ=255)
                         acaTATTATATGTACGCCAGAAATTTTTGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAATGACACATCTATACGAGGATCAt                                                                                                                            <  2:959208/148‑1 (MQ=255)
                         acaTATTATATGTACGCCAGAAATATTTGCTAAATTGTTACATACGATTGCAACTAGTAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCAt                                                                                                                            <  2:930558/148‑1 (MQ=255)
                         acaTATTATATGTACGCCAGAAATATTTGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCAt                                                                                                                            <  2:930392/148‑1 (MQ=255)
                          caTATTATATGTACGCCAGAAATATTTGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCAtt                                                                                                                           <  1:658689/148‑1 (MQ=255)
                            tactataTGTACGCCAGAAATATTTGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTa                                                                                                                         <  1:1222493/145‑1 (MQ=255)
                            cattatATGTACGCCAGAAAAAATCGATAAATTGTTACATACGATTGCAACTAGAAATATCGACATTATATCTGCCAATTACAGATCGTCATCTAAGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTa                                                                                                                         <  1:231588/147‑1 (MQ=255)
                                 tatGTACGCCAGAAATATTTGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAACAGACACATCTATACGATGATCATTTACAATg                                                                                                                    >  1:1077975/1‑148 (MQ=255)
                                  atGTACGCCAGAAATATTTGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGa                                                                                                                   >  2:1020325/1‑148 (MQ=255)
                                  atGTACGCCAGAAATATTTGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTATATCTGCCAATTATAGATCGTCATCTATAAGCAAAGCTCGTATATCATAATAAAAGACACATATATACGATGATCCTTTACAATGa                                                                                                                   >  2:683821/1‑148 (MQ=255)
                                    gTACGCCAGAAATATTTGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGAtt                                                                                                                 >  1:328249/1‑148 (MQ=255)
                                     tACGCCAGAAATATTTGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGCTGATAATTTACAATGATTg                                                                                                                >  2:1326131/1‑148 (MQ=255)
                                      aCGCCAGAAATATTTGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGc                                                                                                               >  2:316914/1‑148 (MQ=255)
                                      aCGCCAGAAATATTTGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGc                                                                                                               >  1:916318/1‑148 (MQ=255)
                                      aCGCCAGAAATATTTGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGc                                                                                                               <  1:75093/148‑1 (MQ=255)
                                      aCGCCAGAAATACTTGCTAAATTGTTACATACGATTGCACTTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGc                                                                                                               >  2:855036/1‑148 (MQ=255)
                                         ccAGAAATACTTGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGta                                                                                                            <  1:364402/148‑1 (MQ=255)
                                          cAGAAATATTTGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGtat                                                                                                           >  2:1159658/1‑148 (MQ=255)
                                              actatTTGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTg                                                                                                       >  1:210636/3‑148 (MQ=255)
                                                   ttGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAGTGATTGCGTATAGTGAtgtg                                                                                                  <  1:495314/148‑1 (MQ=255)
                                                   ttGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGAtgtg                                                                                                  <  1:1134176/148‑1 (MQ=255)
                                                    tGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATgtgt                                                                                                 <  2:1191408/148‑1 (MQ=255)
                                                      cTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATAGAGTATAGTGATGTGTCt                                                                                               >  2:1335456/1‑148 (MQ=255)
                                                       tAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCtt                                                                                              >  1:1252238/1‑148 (MQ=255)
                                                           ttGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAATGATGTGTCtttttt                                                                                          <  2:995292/148‑1 (MQ=255)
                                                            tGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCttttttt                                                                                         <  1:1102616/148‑1 (MQ=255)
                                                            tGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAAGGATTGCGTATAGTGATGTGTCttttttt                                                                                         <  1:887554/148‑1 (MQ=255)
                                                               tACATACGATAGCAACTAGAACTATCGACATTCTATCTGCCAATTATAAACCGTCATCTATGAGCAAATCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGta                                                                                      <  2:917759/148‑1 (MQ=255)
                                                                 cATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGtatt                                                                                    >  2:37222/1‑148 (MQ=255)
                                                                   tACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATCGTGATGTGTCTTTTTTTGtattat                                                                                  >  2:113625/1‑148 (MQ=255)
                                                                   tACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGtattat                                                                                  >  1:713395/1‑148 (MQ=255)
                                                                    aCGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTattatt                                                                                 >  1:190585/1‑148 (MQ=255)
                                                                     cGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTAGGAGCAAAGCTCGTATATCATAATAAAAGACACACCTATACGATGATCATTTACAATGATTGCGTATAGTGCTGTGTCTTTTTTTGTAttattt                                                                                >  2:899701/1‑148 (MQ=255)
                                                                          gCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTAtttt                                                                           >  2:214746/1‑148 (MQ=255)
                                                                          gCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAACGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCtt                                                                           >  2:541036/1‑148 (MQ=255)
                                                                             aCTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCgg                                                                        <  2:567730/148‑1 (MQ=255)
                                                                             aCTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCgg                                                                        <  1:179286/148‑1 (MQ=255)
                                                                             aCTAGAAAGATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCgg                                                                        <  1:450368/148‑1 (MQ=255)
                                                                                aGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACCTGTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACg                                                                     <  1:540832/148‑1 (MQ=255)
                                                                                 gAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGa                                                                    <  2:261111/148‑1 (MQ=255)
                                                                                       tCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATGATTTATCTTCGGACGATTGATc                                                              >  1:1260908/1‑148 (MQ=255)
                                                                                        cGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATcc                                                             >  1:733974/1‑148 (MQ=255)
                                                                                         gACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCt                                                            >  1:411278/1‑148 (MQ=255)
                                                                                         gACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATATTCGGACGATTGATcat                                                            >  1:625363/1‑146 (MQ=255)
                                                                                             ttCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTCTTTATCTTCGGACGATTGATCCTCAAc                                                        >  1:822782/1‑148 (MQ=255)
                                                                                              tCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAAcc                                                       >  1:1415113/1‑148 (MQ=255)
                                                                                                 atcctccAATTATAGATCGTCATCTATTAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACCATTGATCCTCAACCAtt                                                    <  2:1105956/143‑1 (MQ=255)
                                                                                                 aTCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCAtt                                                    <  2:320836/148‑1 (MQ=255)
                                                                                                   cTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGTTTGATCCTCAACCATTTg                                                  >  2:791173/1‑148 (MQ=255)
                                                                                                      tcAATTATAAATCGTCATCTATGAGCAAATGTCGTATATCATAATAAAAGACTCTTCTATACGATGATCATTTACAATTATTTCGTATAGTGAGGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTc                                               <  2:532823/147‑1 (MQ=255)
                                                                                                      ccAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGCTGTGTCTTTTTTTTTATTATTTATCTTCGCACGATTGCTCCTCATCCATTTGTTc                                               >  2:981646/1‑148 (MQ=255)
                                                                                                      ccAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTc                                               <  2:1384830/148‑1 (MQ=255)
                                                                                                      ccAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTc                                               <  2:297514/148‑1 (MQ=255)
                                                                                                             taGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCt                                        >  2:398596/1‑148 (MQ=255)
                                                                                                             taGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCt                                        <  2:834868/148‑1 (MQ=255)
                                                                                                             taGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCt                                        >  1:37174/1‑148 (MQ=255)
                                                                                                                aTCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGACGTGACTTATTTTGTGTTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCa                                     >  2:429232/1‑148 (MQ=255)
                                                                                                                aTCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATAGCGTATAGGGATGTGTCTTTTTTTGTATTATTTATCTTCGGTCGATTTATCCTCAACCATTCGTTCaaaacgtcca                                     >  2:1252590/1‑141 (MQ=255)
                                                                                                                 tCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCAc                                    >  1:791868/1‑148 (MQ=255)
                                                                                                                  cGTCATCTATGACCAAAGCTCGTATATCATAATAAAAGCCACATCTATACAATGATCATTTACAATGATTGCGCATAGGGATGTGTCTTTTTTTATCTTATTTATCTTGGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCaag                                   >  2:469992/1‑146 (MQ=255)
                                                                                                                   gTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGa                                  >  2:432201/1‑148 (MQ=255)
                                                                                                                         tATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATAATCTTATCTGGTTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTtgt                            <  1:668434/148‑1 (MQ=255)
                                                                                                                          aTGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTtgtg                           <  1:219501/148‑1 (MQ=255)
                                                                                                                           tGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTCCAATGCTTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCAATTGTTCACATGCTTCACGTACTTGTgg                          >  1:798519/1‑148 (MQ=255)
                                                                                                                             aGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTa                        >  2:1385330/1‑148 (MQ=255)
                                                                                                                                aaaGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTg                     <  2:661550/148‑1 (MQ=255)
                                                                                                                                aaaGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTg                     >  1:970760/1‑148 (MQ=255)
                                                                                                                                aaaGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTg                     >  1:1337269/1‑148 (MQ=255)
                                                                                                                                aaaGCTCGTATACTATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTg                     <  2:986255/148‑1 (MQ=255)
                                                                                                                                 aaGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGt                    <  1:224236/148‑1 (MQ=255)
                                                                                                                                  aGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTc                   >  2:133895/1‑148 (MQ=255)
                                                                                                                                  aGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTc                   <  1:418511/148‑1 (MQ=255)
                                                                                                                                    cTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCAt                 <  2:124339/148‑1 (MQ=255)
                                                                                                                                    cTCGTATATCATAATAAAAGACACATCTAGACGATTATCATTTACAATGATTGCGTATAGTGATGTATCTTTTTTTATATTATTTATCTTCGGACAATTGATCCTCAACCATTTGTTCAAATTCTTCACGAACTTCTGCTACTGTCAt                 <  2:1106444/148‑1 (MQ=255)
                                                                                                                                         atatCATAATAAAAGACACATCTATACAATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTGTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACcta            >  1:846172/1‑148 (MQ=255)
                                                                                                                                          tatCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACctac           <  2:1411135/148‑1 (MQ=255)
                                                                                                                                          tatCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTAACGAACTTGTGGTAGTGTCATACctac           >  1:358162/1‑148 (MQ=255)
                                                                                                                                               taataaAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACaa      <  1:216158/148‑1 (MQ=255)
                                                                                                                                                aataaAAGACACATCTATACGATGATCATTTACACTGATTGCGGATAGTGGCGTGTATTTTTTTGTATTATCTATCTTCGGACGATTGATACTCAACCATTAGTTCAAATGCTTCACGAACTTGAGGTGCTGTCATACCTACTACAAc     >  2:808430/1‑148 (MQ=255)
                                                                                                                                                 ataaAAGTAACATCTTTACTATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGTCGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACt    <  1:1177479/148‑1 (MQ=255)
                                                                                                                                                  taaAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTCTAACtt   >  2:954471/1‑148 (MQ=255)
                                                                                                                                                   aaaaGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCTTACCTACTACAACttt  >  2:373011/1‑147 (MQ=255)
                                                                                                                                                   aaaaGACACATCTATACGATGATCATTTACAATGATTGCGAATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCACCCAATTGTTCAAATTCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTg  >  1:1289651/1‑148 (MQ=255)
                                                                                                                                                   aaaaGAAACATCTATACGATGATGATTTACAATGATTGCGTATAGTGAAGTGCCTTTTATTGTATTATTTACCTTCGGACGATTGATGGTCAACCATTTGTTCAGTTGTTTCACGAAATTTTGGTACTGTCATACCTACTACAACTTg  >  2:550795/1‑148 (MQ=255)
                                                                                                                                                   |                                                                                                                                                   
CTTATACGTTGAATAAGTCTCATGCACATATTATATGTACGCCAGAAATATTTGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTG  >  USA300TCH1516_ALE/2439894‑2440188

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.