New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 2440041 =105 (0.810)4 (0.030) 4/270 9.1 3.8% intergenic (+2/+64) USA300HOU_RS12570/malP hypothetical protein/PTS system maltose‑specific EIICB component
?USA300TCH1516_ALE 2440099 = 106 (0.890)intergenic (+60/+6) USA300HOU_RS12570/malP hypothetical protein/PTS system maltose‑specific EIICB component
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 127 total aligned reads displayed.

TTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTGAAATATTCC  >  USA300TCH1516_ALE/2439953‑2440246
                                                                                                                                                  |                                                                                                                                                   
 tGTTCCATTCGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCttttttt                                                                                                                                                   <  1:671994/148‑1 (MQ=255)
 tGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCttttttt                                                                                                                                                   <  1:1102616/148‑1 (MQ=255)
 tGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAAGGATTGCGTATAGTGATGTGTCttttttt                                                                                                                                                   <  1:887554/148‑1 (MQ=255)
      cATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGtatt                                                                                                                                              >  2:37222/1‑148 (MQ=255)
         aCGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTattatt                                                                                                                                           >  1:190585/1‑148 (MQ=255)
          cGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTAGGAGCAAAGCTCGTATATCATAATAAAAGACACACCTATACGATGATCATTTACAATGATTGCGTATAGTGCTGTGTCTTTTTTTGTAttattt                                                                                                                                          >  2:899701/1‑148 (MQ=255)
               gCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTAtttt                                                                                                                                     >  2:214746/1‑148 (MQ=255)
               gCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAACGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCtt                                                                                                                                     >  2:541036/1‑148 (MQ=255)
                  aCTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCgg                                                                                                                                  <  1:179286/148‑1 (MQ=255)
                  aCTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCgg                                                                                                                                  <  2:567730/148‑1 (MQ=255)
                  aCTAGAAAGATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCgg                                                                                                                                  <  1:450368/148‑1 (MQ=255)
                     aGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACCTGTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACg                                                                                                                               <  1:540832/148‑1 (MQ=255)
                      gAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGa                                                                                                                              <  2:261111/148‑1 (MQ=255)
                             cGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATcc                                                                                                                       >  1:733974/1‑148 (MQ=255)
                                  ttCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTCTTTATCTTCGGACGATTGATCCTCAAc                                                                                                                  >  1:822782/1‑148 (MQ=255)
                                      atcctccAATTATAGATCGTCATCTATTAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACCATTGATCCTCAACCAtt                                                                                                              <  2:1105956/143‑1 (MQ=255)
                                      aTCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCAtt                                                                                                              <  2:320836/148‑1 (MQ=255)
                                        cTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGTTTGATCCTCAACCATTTg                                                                                                            >  2:791173/1‑148 (MQ=255)
                                           tcAATTATAAATCGTCATCTATGAGCAAATGTCGTATATCATAATAAAAGACTCTTCTATACGATGATCATTTACAATTATTTCGTATAGTGAGGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTc                                                                                                         <  2:532823/147‑1 (MQ=255)
                                           ccAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGCTGTGTCTTTTTTTTTATTATTTATCTTCGCACGATTGCTCCTCATCCATTTGTTc                                                                                                         >  2:981646/1‑148 (MQ=255)
                                           ccAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTc                                                                                                         <  2:1384830/148‑1 (MQ=255)
                                           ccAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTc                                                                                                         <  2:297514/148‑1 (MQ=255)
                                                  taGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCt                                                                                                  <  2:834868/148‑1 (MQ=255)
                                                     aTCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGACGTGACTTATTTTGTGTTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCa                                                                                               >  2:429232/1‑148 (MQ=255)
                                                      tCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCAc                                                                                              >  1:791868/1‑148 (MQ=255)
                                                       cGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGCTCATTTCAAATGAGAGCGGATAGTGATGTGTAAGTAGCGACAGGAAACAGCATCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACg                                                                                             >  2:1353786/1‑148 (MQ=255)
                                                        gTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGa                                                                                            >  2:432201/1‑148 (MQ=255)
                                                              tATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATAATCTTATCTGGTTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTtgt                                                                                      <  1:668434/148‑1 (MQ=255)
                                                               aTGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTtgtg                                                                                     <  1:219501/148‑1 (MQ=255)
                                                                tGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTCCAATGCTTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCAATTGTTCACATGCTTCACGTACTTGTgg                                                                                    >  1:798519/1‑148 (MQ=255)
                                                                tGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCCCGAAATTGTgg                                                                                    >  1:991475/1‑148 (MQ=255)
                                                                  aGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTa                                                                                  >  2:1385330/1‑148 (MQ=255)
                                                                     aaaGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTg                                                                               <  2:661550/148‑1 (MQ=255)
                                                                     aaaGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTg                                                                               >  1:1337269/1‑148 (MQ=255)
                                                                     aaaGCTCGTATACTATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTg                                                                               <  2:986255/148‑1 (MQ=255)
                                                                      aaGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGt                                                                              <  1:224236/148‑1 (MQ=255)
                                                                       aGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTc                                                                             >  2:133895/1‑148 (MQ=255)
                                                                       aGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTc                                                                             <  1:418511/148‑1 (MQ=255)
                                                                         cTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCAt                                                                           <  2:124339/148‑1 (MQ=255)
                                                                         cTCGTATATCATAATAAAAGACACATCTAGACGATTATCATTTACAATGATTGCGTATAGTGATGTATCTTTTTTTATATTATTTATCTTCGGACAATTGATCCTCAACCATTTGTTCAAATTCTTCACGAACTTCTGCTACTGTCAt                                                                           <  2:1106444/148‑1 (MQ=255)
                                                                              atatCATAATAAAAGACACATCTATACAATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTGTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACcta                                                                      >  1:846172/1‑148 (MQ=255)
                                                                               tatCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTAACGAACTTGTGGTAGTGTCATACctac                                                                     >  1:358162/1‑148 (MQ=255)
                                                                                     aataaAAGACACATCTATACGATGATCATTTACACTGATTGCGGATAGTGGCGTGTATTTTTTTGTATTATCTATCTTCGGACGATTGATACTCAACCATTAGTTCAAATGCTTCACGAACTTGAGGTGCTGTCATACCTACTACAAc                                                               >  2:808430/1‑148 (MQ=255)
                                                                                      ataaAAGTAACATCTTTACTATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGTCGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACt                                                              <  1:1177479/148‑1 (MQ=255)
                                                                                       taaAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTCTAACtt                                                             >  2:954471/1‑148 (MQ=255)
                                                                                        aaaaGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCTTACCTACTACAACttt                                                            >  2:373011/1‑147 (MQ=255)
                                                                                        aaaaGACACATCTATACGATGATCATTTACAATGATTGCGAATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCACCCAATTGTTCAAATTCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTg                                                            >  1:1289651/1‑148 (MQ=255)
                                                                                          aaGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTCCAACTTGGa                                                          >  1:889993/1‑148 (MQ=255)
                                                                                          aaGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGa                                                          >  1:144897/1‑148 (MQ=255)
                                                                                          aaGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGa                                                          >  2:423957/1‑148 (MQ=255)
                                                                                          aaGACACATCTATACGATGATCATTTACAAAGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGa                                                          >  2:1029260/1‑148 (MQ=255)
                                                                                           aGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGAt                                                         >  1:346567/1‑148 (MQ=255)
                                                                                                     atccgttgatCATTTACAATGATTGCTTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGTTCCTCAATCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCa                                               <  2:500224/142‑1 (MQ=255)
                                                                                                     ataCGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCa                                               <  2:1164729/148‑1 (MQ=255)
                                                                                                      taCGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTTTTTTTTTTTTCTTCGGACGATTGATACTCAACCATTTGTTTAAATTCTTCACGAACTTGTGGTACTTCCATCCCTACTACAGCTTCGTTACTCttcacac                                              >  2:576173/1‑143 (MQ=255)
                                                                                                      taCGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCGCTGGCTTGTGGTACTGTCATCCCCGCTACAACTTGGATACTCttccacc                                              >  1:532833/1‑143 (MQ=255)
                                                                                                      taCGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCAc                                              >  1:196410/1‑148 (MQ=255)
                                                                                                      taCGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCAc                                              >  1:134948/1‑148 (MQ=255)
                                                                                                       atgagtatCATTTACAATGATTGCGTATAGGGATGTGTCTTTTTTTGCATTATTCATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTCCACGAACTTGTGGTACTTTCATACCTACTACAACTTGGATACTCTTACCAct                                             <  1:269932/142‑1 (MQ=255)
                                                                                                       aCGATGATCATTTACAATGATTGCGTACAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCAct                                             <  1:978539/148‑1 (MQ=255)
                                                                                                        cGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCActc                                            <  1:616114/148‑1 (MQ=255)
                                                                                                        cGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCActc                                            >  1:389314/1‑148 (MQ=255)
                                                                                                        cGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCActc                                            <  1:11077/148‑1 (MQ=255)
                                                                                                         gatgatCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTGTTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACCCTTACCGctct                                           >  2:357877/1‑148 (MQ=255)
                                                                                                         gatgatCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCActct                                           <  1:881021/148‑1 (MQ=255)
                                                                                                         gatgatCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCActct                                           >  2:1129488/1‑148 (MQ=255)
                                                                                                         gatgatCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCActct                                           >  1:1267686/1‑148 (MQ=255)
                                                                                                           tgatCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCttt                                         <  2:1096624/148‑1 (MQ=255)
                                                                                                            tatCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTa                                        <  2:190585/147‑1 (MQ=255)
                                                                                                               cATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCCCTCTTTACTa                                     >  1:1231746/1‑148 (MQ=255)
                                                                                                               cATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGGACTGTCGTACCTACTACAACTTTGCTACGCTTACCACTCTTTACTa                                     >  1:537949/1‑148 (MQ=255)
                                                                                                                     cAATGATTGCGTAGAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATACTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTCGATACTCTTACCACTCTTTACTAATCCgt                               >  2:1037523/1‑148 (MQ=255)
                                                                                                                      aaTGATTGCGTATAGTGATGTGTCTTTTTTGGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCgtg                              >  1:1038963/1‑148 (MQ=255)
                                                                                                                          aTTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGcc                          >  1:1318289/1‑148 (MQ=255)
                                                                                                                           ttGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCa                         <  1:1097427/148‑1 (MQ=255)
                                                                                                                               tcgtatagATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATttg                     <  1:1177738/141‑1 (MQ=255)
                                                                                                                                   aGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGCACTTGTGATACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCCTGTGCCATATGTTGa                 >  2:706705/1‑148 (MQ=255)
                                                                                                                                   aGTGATGTGACTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAAAGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGAATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGa                 >  2:478026/1‑148 (MQ=255)
                                                                                                                                    gTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGAt                >  1:833287/1‑148 (MQ=255)
                                                                                                                                    gTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGAt                >  2:221298/1‑148 (MQ=255)
                                                                                                                                     tGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTACTCCGTGTGCCATTTGTAGAtc               >  2:691073/1‑147 (MQ=255)
                                                                                                                                     tGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATg               >  1:49754/1‑148 (MQ=255)
                                                                                                                                      gATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGc              >  1:221382/1‑148 (MQ=255)
                                                                                                                                      gATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTGGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGc              >  2:704442/1‑148 (MQ=255)
                                                                                                                                       aTGTGTCTTTGTTTGTATTATTTATCTTCGGAGCATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGTATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCg             <  2:38800/148‑1 (MQ=255)
                                                                                                                                        tgttTCTTTTTTTTTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGt            <  2:625363/148‑1 (MQ=255)
                                                                                                                                        tgtgTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGt            <  2:411278/148‑1 (MQ=255)
                                                                                                                                          tgtCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTGa          <  1:398596/148‑1 (MQ=255)
                                                                                                                                           gtCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTGaa         >  1:1244310/1‑148 (MQ=255)
                                                                                                                                           gtCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTGaa         >  1:829006/1‑148 (MQ=255)
                                                                                                                                           gtCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTGaa         >  1:379321/1‑148 (MQ=255)
                                                                                                                                           gtCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTGaa         <  1:37222/148‑1 (MQ=255)
                                                                                                                                           gtCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCATTGTGCCATTTGTGGATGCTTGaa         >  2:1252164/1‑148 (MQ=255)
                                                                                                                                           gtCTTTTTTTGTATTATTTATATTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACATACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCAATTTGTTGATGCGTGaa         >  1:464008/1‑148 (MQ=255)
                                                                                                                                             cTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGCTACTCTTACCACTCTTTACTAATCCGTGTGCCAGTTGTTGATGAGTGAAat       >  2:320960/1‑148 (MQ=255)
                                                                                                                                               ttttttGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTGAAatat     >  1:364721/1‑148 (MQ=255)
                                                                                                                                                tttttGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCACATGCTTCCCGAACGTGGGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTGAAATAtt    <  1:1385330/148‑1 (MQ=255)
                                                                                                                                                 ttttGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTGAAATATTc   <  1:1376768/148‑1 (MQ=255)
                                                                                                                                                 ttttGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCACCTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTGAAATATTc   <  1:674489/148‑1 (MQ=255)
                                                                                                                                                  tttGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTGAAATATTcc  >  1:966083/1‑148 (MQ=255)
                                                                                                                                                  |                                                                                                                                                   
TTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTGAAATATTCC  >  USA300TCH1516_ALE/2439953‑2440246

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.