| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 399691 = | 119 (0.910) | 5 (0.040) | 4/272 | 9.1 | 4.4% | coding (1712/1713 nt) | efeU | Ferrous iron permease EfeU |
| ? | USA300TCH1516_ALE | 399718 = | 108 (0.900) | intergenic (+26/+66) | efeU/tatC2 | Ferrous iron permease EfeU/Sec‑independent protein translocase protein TatCy | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTCTTTGAGTTCAGTATGTTCATCGTTAAGTTCACATGCCGAGGCAAACCGCCAACACATTAACCTTATACGAATCAATGCTGTGATTATCGTTATACTGCAATACCGAATATTTCCAATATAGCAACAAAAAAACAGGCACTCGGCCTGTTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/399846‑399691‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgttttttTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGTTTGCCTCGGCATGTGAACTTAACGATGAACATACTGAACTCAAAGAGCAATATGAGTGGCAATGT > USA300TCH1516_ALE/399718‑399864 CTCTTTGAGTTCAGTATGTTCATCGTTAAGTTCACATGCCGAGGCAAACCGCCAACACATTAACCTTATACGAATCAATGCTGTGATTATCGTTATACTGCAATACCGAATATTTCCAATATCGCAACAAAAAAACAGGCCCTCGGCC > 1:747378/1‑148CTCTTTGAGTTCAGTATGTTCATCGTTAAGTTCACATGCCGAGGCAAACCGCCAACACATTAACCTTATACGAATCAATGCTGTGATTATCGTTATACTGCAATACCGAATATTTCCAATATAGCAACAAAAAAACAGGCACTCGGCC < 2:180488/148‑1CTCTTTGAGTTCAGTATGTTCATCGTTAAGTTCACATGCCGAGGCAAACCGCCAACACATTAACCTTATACGAATCAATGCTGTGATTATCGTTATACTGCAATACCGAATATTTCCAATATAGCAACAAAAAAACAGGCACTCGGCC > 1:1069875/1‑148CTCTTTGAGTTCAGTATGTTCATCGTTAAGTTCACATGCCGAGGCAAACCGCCAACACATTAACCTTATACGAATCAATGCTGTGATTATCGTTATACTGCAATACCGAATATTTCCAATATAGCAACAAAAAAACAGGCACTCGGCC < 1:847102/148‑1CTCTTTGAGTTCAGTATGTTCATCGTTAAGTTCACATGCCGAGGCAAACCGCCAACACATTAACCTTATACGAATCAATGCTGTGATTATCGTTATACTGCAATACCGAATATTTCCAATATAGCAACAAAAAAACAGGCACTCGGCC > 2:1386269/1‑148CTCTTTGAGTTCAGTATGTTCATAGTTAAGTTCACATGCCGAGGCAAACCGCCAACACATTAACCTTATACGAATCAATGCTGTGATTATCGTTATACTGCAATACCGAATATTTCCAATATAGCAACCAAAAAACAGACACTCGGCC > 2:1405605/1‑148 taTTTGTGTTTAGTATGTTCATCGTTAAGTCCACATGCCGTGGCAAACCGCCAACACATTAACCTTATACGAATCAATGCTGTGATTATCGTTATACTGCAATACCGAATATTTCCAATATAGCAACAAAAAAACAGGCACTCGGCCT < 2:744317/146‑1 GTTCAGTATGTTCATCGTTAAGTTCACATGCCGAGGCAAACCGCCAACACATTAACCTTATACGAATCAATGCTGTGATTATCGTTATACTGCAATACCGACTATCACCTGATGAGCATCAAAAAAACAGGCACTCGGCCTGTTTTTT > 1:1314804/1‑148 GCCAACACATTAACCTTATACGAATCAATGCTGTGATTATCGTTATACTGCAATACCGAATATTTCCAATATAGCAACAAAAAAACAGGCACTCGGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATA > 2:142490/1‑148 TATACTGCAATACCGAATATTTCAAATATAGCAACAAAAAAACAGACACTCGGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTACAGTATAACGATAATCACAGCATTGATTCGTATAAGGTGAATGCGTTAGCGGTTca > 2:575754/1‑146 CAAAAAAACAGGCACTCGGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGTTTGCCTCGGCATGTGAACTTAACGATGAACATACTGA < 1:142490/148‑1 AAAAAACAGGCACTCGGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGTTTGCCTCGGCATGTGAACTTAACGATGAACATACTGAAC > 2:325614/1‑148 AAAAAACAGGCACTCGGCCTGTTTTTTTGTTGCTATATTGGAAATACTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGCGTTCGCGGTTTGCCTCGGCATGTGAACGTAACGATGAACATACTGAAC > 2:676595/1‑148 CCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGTTTGCCTCGGCATGTGAACTTAACGATGAACATACTGAACTCAAAGAGCAATATGAG < 1:621797/148‑1 GTTTTTTTGTTGTTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGTTTGCCTCGGCATGTGAACTTAACGATGAACATACTGAACTCAAAGAGCAATATGAGTGG < 2:217060/148‑1 GTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGGTTCGTATAAGGTTAATGTGTTGGCGGTTTGCCTCGGCATGTGAACTTAACGATGAACATACTGAACTCAAAGAGCAATATGAGTGG < 2:283561/148‑1 GTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGTTTGCCTCGGCATGTGAACTTAACGATGAACATACTGAACTCAAAGAGCAATATGAGTGG < 2:860648/148‑1 GTTTTTTTGGTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGGGTTGGCGGTTTGCCTCGGCATGTGAACTTAACGATGAACATAATGTACTCATAGAGCAATATGAGTGG < 2:710377/148‑1 GTTTTTCTGTTGCTATATTGGAAATATTCGGTATTGCAGTAGAACGATAATCACAGCATTGATTCGTATAAGGTCAATGTGTTGGCGGTTTGCCTCGGCATGGGAACTTAACGATGAACATACTGAACTCAAAGAGCAATATGAGTGG < 2:407438/148‑1 TTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGTTTGCCTCGGCATGTGATCTTAACGATGAACATACTGAACTCAAAGAGCAATATGAGTGGCAA < 1:676595/148‑1 TTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGTTTGCCTCGGCATGTGAACTTAACGATGAACATACTGAACTCAAAGAGCAATATGAGTGGCAATG < 2:1156905/148‑1 TTTGTTGCTATACTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGTTTGCCTCGGCATGTGAACTTAACGATGAACATACTGAACTCAAAGAGCAATATGAGTGGCAATG < 1:557640/148‑1 TTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAAAGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTTGCGGTTTTACTCGGCATGTGAACTTAACATTAAACATACTGAACTCAAAGAGAAATCTGAGTGCCATTGc > 2:840962/1‑147 CTCTTTGAGTTCAGTATGTTCATCGTTAAGTTCACATGCCGAGGCAAACCGCCAACACATTAACCTTATACGAATCAATGCTGTGATTATCGTTATACTGCAATACCGAATATTTCCAATATAGCAACAAAAAAACAGGCACTCGGCCTGTTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/399846‑399691‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgttttttTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGTTTGCCTCGGCATGTGAACTTAACGATGAACATACTGAACTCAAAGAGCAATATGAGTGGCAATGT > USA300TCH1516_ALE/399718‑399864 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |