| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 300188 = | 96 (1.060) | 4 (0.050) | 3/260 | 9.6 | 4.0% | coding (455/717 nt) | tarI | Ribitol‑5‑phosphate cytidylyltransferase 1 |
| ? | USA300TCH1516_ALE | 300250 = | 104 (1.230) | coding (517/717 nt) | tarI | Ribitol‑5‑phosphate cytidylyltransferase 1 | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTTCTACAATAATCTTACAAGCATCAGATAAAATACTCTTTTGCTCATCACTCAACTGTGCATAGCTTTCTTTTAATAAATTAATATTAAACGATTGAGGTGTTTGACCTTGGTACATTTCATTACGCACTGGAATTGCATCAATCGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/300337‑300188‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaatcgtttAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTGTAAGATTATTGTAGAAACAAACAAACCGGTTCGACTTGTAAAAGGTGAGTTATATAACATTAAAGTA > USA300TCH1516_ALE/300250‑300387 TTTCTACAATAATCTTACAAGCATCAGATAAAATACTCTTTTGCTCATCACTCAACTGTGCATAGCTTTCTTTTAATAAATTAATATTAAACGATTGAGGTGTTTGACCTTGGTACATTTCATTACGCACTGGAATTGCAT > 1:910741/1‑141TTTCTACAATAATCTTACAAGCATCAGATAAAATACTCTTTTGCTCATCACTCAACTGTGCATAGCTTTCTTTTAATAAATTAATATTAAACGATTGAGGTGTTTGACCTTGGTACATTTCATTACGCACTGGAATTGCAT > 2:73983/1‑141TTTCTACAATAATCTTACAAGCATCAGATAAAATACTCTTTTGCTCATCACTCAACTGTGCATAGCTTTCTTTTAATAAATTAAAATTAAACGATTGAGGTGTTTGACCTTGGTACATTTCATTACGCACTGGAATTGCAT > 2:561623/1‑141 TTCTACAATAATCTTACAAGCATCAGATAAAATACTCTTTTGCTCATCACTCAACTGTGCATAGCTTTCTTTTAATAAATTAATATTAAACGATTGAGGTGTTTGACCTTGGTACATTTCATTACGCACTGGAATTGCATC < 2:464473/141‑1 tTACAATAATCTTACAAGCATCAGATAAAATACGCTTTTGCTCATCACTCAACTGTGCATAGCTTTCTTTTAATAAATTAATATTAAACGATTGAGGTGTTTGACCTTGGTACATTTCATTTCGCACTGGAATTGCATCAA < 2:557777/140‑1 ACAATAATCTTACAAGCATCAGATAAAATACTCTTTTGCTCATCACTCAACTGTGCATAGCTTTCTTTTAATAAATTAATATTAAACGATTGAGGTGTTTGACCTTGGTACATTTCATTACGCACTGGAATTTCATCAATC > 1:175030/1‑141 ACAATAATCTTACAAGCATCAGATAAAATACTCTTTTGCTCATCACTCAACTGTGCATAGCTTTCTTTTAATAAATTAATATTAAACGATTGAGGTGTTTGACCTTGGTACATTTCATTACGCACTGGAATTGCATCAATC < 1:797184/141‑1 AATAATCTTACAAGCATCAGATAAAATACTCTTTTGCTCATCACTCAACTGTGCATAGCTTTCTTTTAATAAATTAATATTAAACGATTGAGGTGTTTGACCTTGGTACATTTCATTACGCACTGGAATTGCATCAATCGT < 1:913762/141‑1 ATTAATATTAAACGATTGAGGTGTTTGACCTTGGTACATTTCATTACGCACTGGAATTGCATCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTT > 1:23878/1‑141 TTAATATTAAACGATTGAGGTGTTTGACCTTGGTACATTTCATTACGCACTGGAATTGCATCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAGAGAGTATTTTATCTGATGCTTG > 1:401431/1‑141 TTAATATTAAACGATTGAGGTGTTTGACCTTGGTACATTTCATTACGCACTGGAATTGCATCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTG > 1:159570/1‑141 GGAATTGCATCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTGTAAGATTATTGTAGAAACAAACAAACCGGTTCGACTTGTAAAAGGTGAGTT < 2:23878/141‑1 AATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTGTAAGATTATTGTAGAAACAAACAAACCGGTTCGACTTGTAAAAGGTGAGTTATATAACATTA < 1:550617/141‑1 TTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTCATGAGCAAAAGAGTATTTTATCTGATGCTTGTAAGATTATTGTAGAAACAAACAAACCGGTTCGACTTGTAAAAGGTGAGTTATATAACATTAAAGTA < 1:183499/141‑1 TTTCTACAATAATCTTACAAGCATCAGATAAAATACTCTTTTGCTCATCACTCAACTGTGCATAGCTTTCTTTTAATAAATTAATATTAAACGATTGAGGTGTTTGACCTTGGTACATTTCATTACGCACTGGAATTGCATCAATCGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/300337‑300188‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaatcgtttAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTGTAAGATTATTGTAGAAACAAACAAACCGGTTCGACTTGTAAAAGGTGAGTTATATAACATTAAAGTA > USA300TCH1516_ALE/300250‑300387 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |