New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	300188 =	96 (1.060)	4 (0.050)	3/260	9.6	4.0%	coding (455/717 nt)	tarI	Ribitol‑5‑phosphate cytidylyltransferase 1
	?	USA300TCH1516_ALE	300250 =	104 (1.230)					coding (517/717 nt)	tarI	Ribitol‑5‑phosphate cytidylyltransferase 1
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGTCATTGTGACACATGATGCAGTTAGACCATTTTTAACGCATCGTATTATTAAAGAAAATATTCAAGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTGTAA  >  USA300TCH1516_ALE/300048‑300323                                                                                                                                             |                                                                                                                                        tgTCATTGTGACACATGATGCAGTTAGACCATTTTTAACGCATCGTATTATTAAAGAAAATATTCAAGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCa                                                                                                                                         <  1:688421/141‑1 (MQ=255) tgTCATTGTGACACATGATGCAGTTAGACCATTTTTAACGCATCGTATTATTAAAGAAAATATTCAAGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCa                                                                                                                                         >  2:958950/1‑141 (MQ=255)            cacaTGATGCAGTTAGACCATTTTTAACGCATCGTATTATTAAAGAAAATATTCAAGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATg                                                                                                                              >  1:712749/1‑141 (MQ=255)             acaTGATGCAGTTAGACCATTTTTAACGCATCGTATTATTAAAGAAAATATTCAAGCTGCTTTAGAGTACGGTGCAGTAGATGCAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGc                                                                                                                             <  1:597586/141‑1 (MQ=255)             acaTGATGCAGTTAGACCATTTTTAACGCATCGTATTATTAAAGAAAATATTCAAGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGc                                                                                                                             <  1:455279/141‑1 (MQ=255)             aaatgatgCAGTTAGACCATTTTTAACGCATCGTATTATTAAAGAAAATATTCAAGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGc                                                                                                                             <  1:381128/139‑1 (MQ=255)                 tatgCAGTTAGACCATTTTTAACGCATCGTATTATTAAAGAAAATATTCAAGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAAtt                                                                                                                         <  1:176127/140‑1 (MQ=255)                 gatgCAGTTAGACCATTTTTAACGCATCGTATTATTAAAGAAAATATTCAAGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAAtt                                                                                                                         >  1:154430/1‑141 (MQ=255)                 gatgCAGTTAGACCATTTTTAACGCATCGTATTATTAAAGAAAATATTCAAGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGAGGCAAtt                                                                                                                         >  2:777278/1‑141 (MQ=255)                  atgCCGTTAGACCATTTTTAACGCATCGTATTATTAAAGAAAATATTCCCGCCGCTTCACAGTACGGTACAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGAGGCAATTc                                                                                                                        >  1:678296/1‑141 (MQ=255)                  atgCAGTTAGACCATTTTTAACGCATCGTATTATTAAAGAAAATATTCAAGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTc                                                                                                                        >  1:380606/1‑141 (MQ=255)                       gTTAGACCATTTTTAACGCATCGTATTATTAAAGAAAATATTCAAGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTg                                                                                                                   >  2:411538/1‑141 (MQ=255)                             ccATTTTTAACGCATCGTATTATTAAAGAAAATATTCAAGCTGCTTTAGAGTGCGGTGTAGTAGATACAGTGATTGATGCTATAGCTACGAGTGTTACATCTAAAGTGATTCAGACGATTGTGGCATTTCCAGTGCGTAAt                                                                                                             >  2:545878/1‑141 (MQ=255)                                 ttttAACGCATCGTATTATTCAAGAAAAGATTCAAGCTGCTTTAGCGTACGGTGCCGTAGATACAGTGATTGATGCTATAGATACGCTGCTTACATCTAAAGATAATCAAACGATTGATCCAATACCAGTCCGTAATGaaa                                                                                                         >  1:60220/1‑141 (MQ=255)                                 ttttAACGCATCGTATTATTAAAGAAAATATTCAAGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGaaa                                                                                                         >  1:22839/1‑141 (MQ=255)                                 ttttAACGCATCGTATTATTAAAGAAAATATTCAAGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGaaa                                                                                                         <  1:484725/141‑1 (MQ=255)                                 ttttAACGCATCGTATTATTAAAGAAAATATTCAAGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTCTTACATCTAAAGATAATCAACCGATGGATGCAATTCCAGTGCGTAATGaaa                                                                                                         <  2:705104/141‑1 (MQ=255)                                   ttAACGCATCGTATTATTAAAGAAAATATTCAAGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATg                                                                                                       <  2:645846/141‑1 (MQ=255)                                      aCGCATCGTATTATTAAAGAAAATATTCAAGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTAc                                                                                                    >  1:653710/1‑141 (MQ=255)                                      aCGCATCGTATTATTAAAGAAAATATTCAAGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTAc                                                                                                    >  2:386093/1‑141 (MQ=255)                                      aCGCATCGTATTATTAAAGAAAATATTCAAGCTGCTTTAGAGTACGGTACAGTAGCTACAGTGATTGATGATATAGATACGATTGTTACATCTAAAGCTAATCAAACGCATGATGCAATTCCAGTGCGTAATGAAATGTAc                                                                                                    >  2:329829/1‑141 (MQ=255)                                       cGCATCGTATTATTAAAGAAAATATTCAAGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTGAAGATAATCAAACGATTGATGCAATTACAGTCCGTAATGAAATGTAcc                                                                                                   >  1:568556/1‑141 (MQ=255)                                           tCGTATTATTAAAGAAAATATTCAAGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAgg                                                                                               >  2:261044/1‑141 (MQ=255)                                                  attaAAGAAAATATTCAAGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAaca                                                                                        <  1:672250/141‑1 (MQ=255)                                                  attaAAGAAAATATTCAAGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAaca                                                                                        <  1:265302/141‑1 (MQ=255)                                                  attaAAGAAAATATTCAAGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAaca                                                                                        <  1:537137/141‑1 (MQ=255)                                                   ttaAAGAAAATATTCAAGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAacac                                                                                       <  1:554306/141‑1 (MQ=255)                                                    taAAGAAAATATTCAAGCTGCTTTAGTGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAACATAATCAAACGATTGATGCAATTCCAGTGCGTAATGACATGTACCAAGGTCAAACAcc                                                                                      <  1:605987/141‑1 (MQ=255)                                                    taAAGAAAATATTCAAGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACAcc                                                                                      <  1:829248/141‑1 (MQ=255)                                                     aaaGAAAATATTCAAGGTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCt                                                                                     <  2:975631/141‑1 (MQ=255)                                                     aaaGAAAATATTCAAGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCt                                                                                     <  2:975632/141‑1 (MQ=255)                                                     aaaGAAAATATTCAAGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGAGTCCTGAAATGTACAAAACTCGAACACCt                                                                                     >  2:999409/1‑141 (MQ=255)                                                     aaaGAAAATATGCAAGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTAGAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCt                                                                                     <  2:395740/141‑1 (MQ=255)                                                           aaTATTCAAGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTTTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAATACCTCAATCg                                                                               <  1:721909/141‑1 (MQ=255)                                                           aaTATTCAAGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCg                                                                               <  2:63520/141‑1 (MQ=255)                                                               ttCAAGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTa                                                                           <  1:411538/141‑1 (MQ=255)                                                               ttCAAGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTa                                                                           >  1:69653/1‑141 (MQ=255)                                                                tCAAGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTaa                                                                          >  1:369970/1‑141 (MQ=255)                                                                tCAAGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTaa                                                                          >  1:141788/1‑141 (MQ=255)                                                                 taaGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGATATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCTAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAat                                                                         <  1:77612/140‑1 (MQ=255)                                                                 cAAGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAat                                                                         <  1:536472/141‑1 (MQ=255)                                                                 cAAGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAat                                                                         >  1:50846/1‑141 (MQ=255)                                                                 cAAGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAAGGTACCAAGGTCAAACACCTCAATCGTTTAat                                                                         <  1:278080/141‑1 (MQ=255)                                                                  aaGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTAAAGAGACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAata                                                                        <  1:428478/141‑1 (MQ=255)                                                                  aaGCTGCCTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAata                                                                        <  2:370204/141‑1 (MQ=255)                                                                      tgctTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTaa                                                                    >  2:910741/1‑141 (MQ=255)                                                                       gctTTAGAGGACGGTGCAATAGATACAGTTATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACATCTCAATCGTTTAATATTAAt                                                                   <  1:837289/141‑1 (MQ=255)                                                                       gccttAGAGTACGGTGCAGTAGATACAGTGATTGAAGCTATAGATACGATTGTTCCATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAAt                                                                   <  1:823069/138‑1 (MQ=255)                                                                        ctTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAAtt                                                                  >  2:175030/1‑141 (MQ=255)                                                                            agagTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATttatt                                                              <  2:101025/141‑1 (MQ=255)                                                                             gagTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATttatta                                                             <  1:700802/141‑1 (MQ=255)                                                                             gagTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGCTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATttatta                                                             >  2:547313/1‑141 (MQ=255)                                                                             gagTACGGTACAGTGGATAAAGTGATTGAAGCTATAGATACGATTCCAAGATCTAAAGGTAATCGAACGATTGATGCAATTCCAGTGCGAAATGAAATGTACCAAGGACAAACACCTCAAGCGGTTAATATCAAttaaata                                                             >  2:547381/1‑136 (MQ=255)                                                                              agTACGGTGCAGTGGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCGAACGATTGATGCAAACCCAGTGAGAAATGAAATGTACCACGGTCAAACACCCCAATCGTTTAATATTAATTTATTaa                                                            >  2:768353/1‑141 (MQ=255)                                                                              agTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTaa                                                            >  2:894198/1‑141 (MQ=255)                                                                              agTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTaa                                                            >  1:251520/1‑141 (MQ=255)                                                                              agTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTaa                                                            <  2:712749/141‑1 (MQ=255)                                                                              agTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTaa                                                            >  1:641272/1‑141 (MQ=255)                                                                              agTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTaa                                                            >  2:130046/1‑141 (MQ=255)                                                                                       cAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCt                                                   >  1:807193/1‑141 (MQ=255)                                                                                       cAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCt                                                   >  2:166890/1‑141 (MQ=255)                                                                                         gTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTAt                                                 >  1:119651/1‑141 (MQ=255)                                                                                           aGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGc                                               <  2:67426/141‑1 (MQ=255)                                                                                           aGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGc                                               <  1:965632/141‑1 (MQ=255)                                                                                               aCAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAg                                           >  2:124904/1‑141 (MQ=255)                                                                                                     attgatGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGtcaagg                                     >  2:216974/1‑136 (MQ=255)                                                                                                     attgatGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAgg                                     >  2:389274/1‑140 (MQ=255)                                                                                                     attgatGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGGTGAGt                                     >  2:242936/1‑141 (MQ=255)                                                                                                      ttgatGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGtg                                    >  1:603339/1‑141 (MQ=255)                                                                                                          tGCTATAGATACGATTGTTACCTCTAAAGAGAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGtgatga                                <  1:924469/141‑1 (MQ=255)                                                                                                          tGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACCGTTGAGtgatga                                <  1:837935/141‑1 (MQ=255)                                                                                                          tGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGtgatga                                <  1:635856/141‑1 (MQ=255)                                                                                                          tGCTATAGATACGATTGTCACATCTAAAGATCAACAAACGATTGATGGCATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTGAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGtgatga                                <  1:242422/141‑1 (MQ=255)                                                                                                          tGCTATAGATACGAGTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGtgatga                                <  1:242395/141‑1 (MQ=255)                                                                                                           gCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAg                               <  2:380606/141‑1 (MQ=255)                                                                                                            cTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGc                              >  2:928355/1‑141 (MQ=255)                                                                                                            cTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGAACAGTTGAGTGATGAgg                              >  1:219544/1‑140 (MQ=255)                                                                                                              ataGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCTAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGtt                                         <  1:739884/128‑1 (MQ=255)                                                                                                              ataGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCTAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGtt                                         >  2:739884/1‑128 (MQ=255)                                                                                                                 gATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAag                         >  1:620261/1‑141 (MQ=255)                                                                                                                  aTACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAaga                        <  1:359555/141‑1 (MQ=255)                                                                                                                      gATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTAt                    <  1:109614/141‑1 (MQ=255)                                                                                                                         tGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTAtttt                 >  1:253670/1‑141 (MQ=255)                                                                                                                         tGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTAtttt                 >  1:783924/1‑141 (MQ=255)                                                                                                                          gTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTa                >  1:705017/1‑141 (MQ=255)                                                                                                                          gTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGCATATTa                >  2:741035/1‑141 (MQ=255)                                                                                                                           ttACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTAt               >  2:143242/1‑141 (MQ=255)                                                                                                                           ttACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTAt               >  2:169394/1‑141 (MQ=255)                                                                                                                              cATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGGGATGAGCAAAAGAGTATTTTATCTg            >  1:953113/1‑141 (MQ=255)                                                                                                                                tCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGAt          <  2:22839/141‑1 (MQ=255)                                                                                                                                ccTAAAAATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGAt          <  2:60220/140‑1 (MQ=255)                                                                                                                                  tAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGc        <  1:166890/141‑1 (MQ=255)                                                                                                                                  tAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTAGAGTGATGAGCAAAAGAGTATTTTATCTGATGc        <  2:807193/141‑1 (MQ=255)                                                                                                                                       aTAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTGTa   <  1:857580/141‑1 (MQ=255)                                                                                                                                        tAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTGTaa  >  1:513089/1‑141 (MQ=255)                                                                                                                                        tAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATATATTAAAAGAAAGCTATGCACAGTTGCATGATGAGCAAACGAGTAGTTTATCTGACGccggtac  >  2:433378/1‑135 (MQ=255)                                                                                                                                             |                                                                                                                                        TGTCATTGTGACACATGATGCAGTTAGACCATTTTTAACGCATCGTATTATTAAAGAAAATATTCAAGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTGTAA  >  USA300TCH1516_ALE/300048‑300323

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.