BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	300188 =	96 (1.060)	4 (0.050)	3/260	9.6	4.0%	coding (455/717 nt)	tarI	Ribitol‑5‑phosphate cytidylyltransferase 1
*	?	USA300TCH1516_ALE	300250 =	104 (1.230)	4 (0.050)	3/260	9.6	4.0%	coding (517/717 nt)	tarI	Ribitol‑5‑phosphate cytidylyltransferase 1
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 106 total aligned reads displayed.

TTCAAGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTGTAAGATTATTGTAGAAACAAACAAACCGGTTCGACTTGTAAAAGGTGAGTTATATAACATTAAAGTA  >  USA300TCH1516_ALE/300110‑300387

ttCAAGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTa                                                                                                                                           >  1:69653/1‑141 (MQ=255)

ttCAAGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTa                                                                                                                                           <  1:411538/141‑1 (MQ=255)

 tCAAGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTaa                                                                                                                                          >  1:141788/1‑141 (MQ=255)

 tCAAGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTaa                                                                                                                                          >  1:369970/1‑141 (MQ=255)

  taaGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGATATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCTAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAat                                                                                                                                         <  1:77612/140‑1 (MQ=255)

  cAAGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAat                                                                                                                                         <  1:536472/141‑1 (MQ=255)

  cAAGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAat                                                                                                                                         >  1:50846/1‑141 (MQ=255)

  cAAGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAAGGTACCAAGGTCAAACACCTCAATCGTTTAat                                                                                                                                         <  1:278080/141‑1 (MQ=255)

   aaGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTAAAGAGACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAata                                                                                                                                        <  1:428478/141‑1 (MQ=255)

   aaGCTGCCTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAata                                                                                                                                        <  2:370204/141‑1 (MQ=255)

       tgctTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTaa                                                                                                                                    >  2:910741/1‑141 (MQ=255)

        gctTTAGAGGACGGTGCAATAGATACAGTTATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACATCTCAATCGTTTAATATTAAt                                                                                                                                   <  1:837289/141‑1 (MQ=255)

        gccttAGAGTACGGTGCAGTAGATACAGTGATTGAAGCTATAGATACGATTGTTCCATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAAt                                                                                                                                   <  1:823069/138‑1 (MQ=255)

         ctTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAAtt                                                                                                                                  >  2:175030/1‑141 (MQ=255)

             agagTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATttatt                                                                                                                              <  2:101025/141‑1 (MQ=255)

              gagTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGCTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATttatta                                                                                                                             >  2:547313/1‑141 (MQ=255)

              gagTACGGTACAGTGGATAAAGTGATTGAAGCTATAGATACGATTCCAAGATCTAAAGGTAATCGAACGATTGATGCAATTCCAGTGCGAAATGAAATGTACCAAGGACAAACACCTCAAGCGGTTAATATCAAttaaata                                                                                                                             >  2:547381/1‑136 (MQ=255)

               agTACGGTGCAGTGGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCGAACGATTGATGCAAACCCAGTGAGAAATGAAATGTACCACGGTCAAACACCCCAATCGTTTAATATTAATTTATTaa                                                                                                                            >  2:768353/1‑141 (MQ=255)

               agTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTaa                                                                                                                            >  1:251520/1‑141 (MQ=255)

               agTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTaa                                                                                                                            >  1:641272/1‑141 (MQ=255)

               agTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTaa                                                                                                                            <  2:712749/141‑1 (MQ=255)

               agTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTaa                                                                                                                            >  2:130046/1‑141 (MQ=255)

               agTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTaa                                                                                                                            >  2:894198/1‑141 (MQ=255)

                        cAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCt                                                                                                                   >  2:166890/1‑141 (MQ=255)

                        cAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCt                                                                                                                   >  1:807193/1‑141 (MQ=255)

                          gTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTAt                                                                                                                 >  1:119651/1‑141 (MQ=255)

                            aGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGc                                                                                                               <  2:67426/141‑1 (MQ=255)

                                aCAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAg                                                                                                           >  2:124904/1‑141 (MQ=255)

                                      attgatGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGtcaagg                                                                                                     >  2:216974/1‑136 (MQ=255)

                                      attgatGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAgg                                                                                                     >  2:389274/1‑140 (MQ=255)

                                      attgatGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGGTGAGt                                                                                                     >  2:242936/1‑141 (MQ=255)

                                       ttgatGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGtg                                                                                                    >  1:603339/1‑141 (MQ=255)

                                           tGCTATAGATACGATTGTTACCTCTAAAGAGAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGtgatga                                                                                                <  1:924469/141‑1 (MQ=255)

                                           tGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACCGTTGAGtgatga                                                                                                <  1:837935/141‑1 (MQ=255)

                                           tGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGtgatga                                                                                                <  1:635856/141‑1 (MQ=255)

                                           tGCTATAGATACGATTGTCACATCTAAAGATCAACAAACGATTGATGGCATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTGAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGtgatga                                                                                                <  1:242422/141‑1 (MQ=255)

                                           tGCTATAGATACGAGTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGtgatga                                                                                                <  1:242395/141‑1 (MQ=255)

                                            gCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAg                                                                                               <  2:380606/141‑1 (MQ=255)

                                             cTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGAACAGTTGAGTGATGAgg                                                                                              >  1:219544/1‑140 (MQ=255)

                                               ataGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCTAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGtt                                                                                                         <  1:739884/128‑1 (MQ=255)

                                               ataGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCTAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGtt                                                                                                         >  2:739884/1‑128 (MQ=255)

                                                  gATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAag                                                                                         >  1:620261/1‑141 (MQ=255)

                                                   aTACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAaga                                                                                        <  1:359555/141‑1 (MQ=255)

                                                       gATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTAt                                                                                    <  1:109614/141‑1 (MQ=255)

                                                          tGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTAtttt                                                                                 >  1:253670/1‑141 (MQ=255)

                                                          tGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTAtttt                                                                                 >  1:783924/1‑141 (MQ=255)

                                                           gTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTa                                                                                >  1:705017/1‑141 (MQ=255)

                                                           gTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGCATATTa                                                                                >  2:741035/1‑141 (MQ=255)

                                                            ttACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTAt                                                                               >  2:169394/1‑141 (MQ=255)

                                                            ttACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTAt                                                                               >  2:143242/1‑141 (MQ=255)

                                                               cATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGGGATGAGCAAAAGAGTATTTTATCTg                                                                            >  1:953113/1‑141 (MQ=255)

                                                                 tCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGAt                                                                          <  2:22839/141‑1 (MQ=255)

                                                                 ccTAAAAATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGAt                                                                          <  2:60220/140‑1 (MQ=255)

                                                                   tAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGc                                                                        <  1:166890/141‑1 (MQ=255)

                                                                   tAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTAGAGTGATGAGCAAAAGAGTATTTTATCTGATGc                                                                        <  2:807193/141‑1 (MQ=255)

                                                                        aTAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTGTa                                                                   <  1:857580/141‑1 (MQ=255)

                                                                         tAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTGTaa                                                                  >  1:513089/1‑141 (MQ=255)

                                                                         tAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATATATTAAAAGAAAGCTATGCACAGTTGCATGATGAGCAAACGAGTAGTTTATCTGACGccggtac                                                                  >  2:433378/1‑135 (MQ=255)

                                                                                aCGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTGTAAGattatt                                                           >  1:913762/1‑141 (MQ=255)

                                                                                  gATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTGTAAGATTATTGt                                                         >  1:797184/1‑141 (MQ=255)

                                                                                  gATTGATGAAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTGTAAGATTATTGt                                                         <  1:175030/141‑1 (MQ=255)

                                                                                    ttGATGCAATTCCAGTGCGAAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGCGTATTTTATCTGATGCTTGTAAGATTATTGTaa                                                       >  2:557777/1‑140 (MQ=255)

                                                                                      gATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTGTAAGATTATTGTAGaa                                                     >  2:464473/1‑141 (MQ=255)

                                                                                       aTGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATTTTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTGTAAGATTATTGTAGaaa                                                    <  2:561623/141‑1 (MQ=255)

                                                                                       aTGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTGTAAGATTATTGTAGaaa                                                    <  2:73983/141‑1 (MQ=255)

                                                                                       aTGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTGTAAGATTATTGTAGaaa                                                    <  1:910741/141‑1 (MQ=255)

                                                                                                cAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTGTAAGATTATTGTAGaaacaaacaaac                                           >  2:245113/1‑141 (MQ=255)

                                                                                                cAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTGTAAGATTATTGTAGaaacaaacaaac                                           >  2:147961/1‑141 (MQ=255)

                                                                                                  gTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGCAACGAGCAAAAGAGTATTTTATCTGATGCTTGTAAGATTATTGTAGAAACAAACAAACCg                                         >  1:471966/1‑141 (MQ=255)

                                                                                                  gTGCGTAAGGAGATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTGTAAGATTATTGTAGAAACAAACAAACCg                                         >  2:834919/1‑141 (MQ=255)

                                                                                                    gagTAATGAAATGTACCAAGGTCAAACAGCTGAAGCGGTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTGTAAGATTATTGTAGAAACAAACAAACCGGt                                       <  2:138309/139‑1 (MQ=255)

                                                                                                    gCGTAGTGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTGTAAGATTATTGTAGAAACAAACAAACCGGt                                       <  2:434046/141‑1 (MQ=255)

                                                                                                             aaTGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTGTAAGATTATTGTAGAAACAAACAAACCGGTTCGACTTGt                              <  2:685587/141‑1 (MQ=255)

                                                                                                             aaTGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTGTAAGATTATTGTAGAAACAAACAAACCGGTTCGACTTGt                              <  2:900917/141‑1 (MQ=255)

                                                                                                             aaTGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTGTAAGATTATTGTAGAAACAAACAAACCGGTTCGACTTGt                              >  2:726311/1‑141 (MQ=255)

                                                                                                              aTGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTGTAAGATTATTGTAGAAACAAACAAACCGGTTCGACTTGTa                             <  1:169394/141‑1 (MQ=255)

                                                                                                              aTGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTGTAAGATTATTGTAGAAACAAACAAACCGGTTCGACTTGTa                             <  1:143242/141‑1 (MQ=255)

                                                                                                               tGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTGTAAGATTATTGTAGAAACAAACAAACCGGTTCGACTTGTaa                            >  2:916216/1‑141 (MQ=255)

                                                                                                                gTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATTTGATGCTTGTAAGATTATTGTAGAAACAAACAAACCGGTTCGACTTGTaaa                           <  2:705017/141‑1 (MQ=255)

                                                                                                                gTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTGTAAGATTATTGTAGAAACAAACAAACCGGTTCGACTTGTaaa                           <  1:218307/141‑1 (MQ=255)

                                                                                                                gTACCAAGGTCAAACACCTCAACCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTGTAAGATTATTGTAGAAACAAACAAACCGGTTCGACTTGTaaa                           <  1:999409/141‑1 (MQ=255)

                                                                                                                 tACCAAGGTCAAACACCTCAATCTTGTAATATTAATTGATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTGTAAGATTATTGTATAAACAAACAAACCGGTTCGACTTGTaaaa                          <  1:130046/141‑1 (MQ=255)

                                                                                                                 tACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTGTAAGATTATTGTAGAAACAAACAAACCGGTTCGACTTGTaaaa                          >  2:550617/1‑141 (MQ=255)

                                                                                                                 tACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTGTAAGATTATTGTAGAAACAAACAAACCGGTTCGACTTGTaaaa                          >  2:330761/1‑141 (MQ=255)

                                                                                                                 tACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTGTAAGATTATTGTAGAAACAAACAAACCGGTTCGACTTGTaaaa                          <  2:251520/141‑1 (MQ=255)

                                                                                                                 tACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTGTAAGATTATTGTAGAAACAAACAAACCGGTTCGACTTGTaaaa                          <  1:894198/141‑1 (MQ=255)

                                                                                                                 tACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGCATTTTATCTGATGCTTGTAAGATTATTGTAGAAGCAAACAAACCGGTTCCGCTTGTaaaa                          >  2:32972/1‑141 (MQ=255)

                                                                                                                 tACCAAGGCCAAACCCCTGAATCGTTTAATATTAATTTACTCCAATAAAGCTATTCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTGTAAGATTATTGTAGAAACAAACAAACCGGTTCGACTTGTaaaa                          <  1:768353/141‑1 (MQ=255)

                                                                                                                  acaaaGGTCAAACACCTAAATCGTTTAATATTAATATATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTGTAAGATTATTGTAGAAACAAACAAACCGGTTCGACTTGTAAAAg                         <  2:253670/138‑1 (MQ=255)

                                                                                                                  aCCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTGTAAGATTATTGTAGAAACAAACAAACCGGTTCGACTTGTAAAAg                         <  2:783924/141‑1 (MQ=255)

                                                                                                                    cAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTGTAAGATTATTGTAGAAACAAACAAACCGGTTCGACTTGTAAAAggg                       >  1:104657/1‑140 (MQ=255)

                                                                                                                    cAACGTCAACCACCTCAATCTTTTAATATTAATTTATTAAAAGAACGCTATGCACAGTTTGGTGTTCAGCAAAAGAGTAGTTTATCTCACGCTCGTAAGATTATTGTAGAAACAAACAAACCGGTTCGACTTGTAACAGGt                       <  2:384157/141‑1 (MQ=255)

                                                                                                                        gTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTGTAAGATTATTGTAGAAACAAACAAACCGGTCCGACTTGTAAAAGGTGAGt                   <  1:545878/141‑1 (MQ=255)

                                                                                                                          cAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGCTGAGAAAAATAGTATTTTATCTGATGCTTGTAAGATTATTGTAGAAACAAACAAACCGGTTCGACTTGTAAAAGGTGAGTta                 <  1:473862/141‑1 (MQ=255)

                                                                                                                              cacCTCAATCGTTTATTATTAATTAATTAAAAGATAGCTATGCAAAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTGTAAGATTATTGTAGAAACAAACAAACCGGTTCGACTTGTAAAAGGTGAGTtatata             <  2:524216/141‑1 (MQ=255)

                                                                                                                              cacCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTGTAAGATTATTGTAGAAACAAACAAACCGGTTCGACTTGTAAAAGGTGAGTtatata             >  1:971269/1‑141 (MQ=255)

                                                                                                                              cacCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTGTAAGATTATTGTAGAAACAAACAAACCGGTTCGACTTGTAAAAGGTGAGTtatata             >  1:161380/1‑141 (MQ=255)

                                                                                                                              cacCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTGTAAGATTATTGTAGAAACAAACAAACCGGTTCGACTTGTAAAAGGTGAGAtatata             >  2:45711/1‑141 (MQ=255)

                                                                                                                                    aaTCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTGTAAGATTATTGTAGAAACAAACAAACCGGTTCGACTTGTAAAAGGTGAGTTATATAACATTa       <  1:550617/141‑1 (MQ=255)

                                                                                                                                         tttAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTCATGAGCAAAAGAGTATTTTATCTGATGCTTGTAAGATTATTGTAGAAACAAACAAACCGGTTCGACTTGTAAAAGGTGAGTTATATAACATTAAAGTa  <  1:183499/141‑1 (MQ=255)

TTCAAGCTGCTTTAGAGTACGGTGCAGTAGATACAGTGATTGATGCTATAGATACGATTGTTACATCTAAAGATAATCAAACGATTGATGCAATTCCAGTGCGTAATGAAATGTACCAAGGTCAAACACCTCAATCGTTTAATATTAATTTATTAAAAGAAAGCTATGCACAGTTGAGTGATGAGCAAAAGAGTATTTTATCTGATGCTTGTAAGATTATTGTAGAAACAAACAAACCGGTTCGACTTGTAAAAGGTGAGTTATATAACATTAAAGTA  >  USA300TCH1516_ALE/300110‑300387

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.