| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1179979 = | 89 (0.980) | 6 (0.070) | 3/252 | 9.4 | 6.9% | intergenic (+235/+70) | USA300HOU_RS05875/USA300HOU_RS05880 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 1180015 = | 83 (1.020) | intergenic (+271/+34) | USA300HOU_RS05875/USA300HOU_RS05880 | hypothetical protein/hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTACTTAGAGTCTTTATAGGATATCTTCACTTCTTTTTAAAAAAGGAAAAACAAGATAAATTTCTTCGTAATGCGTCTCAGTAACACTATTACCAAGAATTAACACGTATATTTAATAACTAAAAAGAGGCAGGTAATCTTGCCTCTTTTTAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1180132‑1179979‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcctctttttagtTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTATAAAGACTCTAAGTACTATTACAGTGGCTAATAACA > USA300TCH1516_ALE/1180015‑1180152 GTACTTAGAGTCTTTATAGGATATCTTCACTTCTTTTTAAAATACAGATTACAAGATAAATTTCTTCGTAATGCGTCTCAGTAACACTATTACCAAGAATTAACACGTATATTTAATAACTAAAAAGAGGCAGGTAATCTT > 1:524873/1‑141GTACTTAGAGTCTTTATAGGATACCTTCACTTCTTTTTACAAAAGGAAAAACAAGATAAATTTCTTCGTAATGCGTCTCAGTAACACTATTACCAAGAATTAACACGTATATTTAATAACTAAAAAGAGGCAGGTAATCTT > 1:282064/1‑141 taaTTAGAGTCTTTATAGGATAACTTCACTTCTTTTTAAAAAAGGAAAAACAAGATAAATTTCTTCGTAATGCGTCTCAGTAACACTATTACCAAGAATTAACACGTATATTTAATAACTAAAAAGAGGCAGGTAATCTTG < 2:950318/138‑1 aaTTAGATGCTTTATAGGATATTTTCACTTCTTTTTAAAAAAGGAAAAACAAGATAAATTTCTTCGTAATGCGTCTCAGTAACACTATTACCAAGAATTAACACGTATATTTAATAACTAAAAAGAGGCAGGTAATCTTGC < 1:180350/139‑1 CTTAGAGTCTTTATAGGATATCTTCACTTCTTTTTAAAAAAGGAAAAACAAGATAAATTTCTTCGTAATGCGTCTCAGTAACACTATTACCAAGAATTAACACGTATATTTAATAACTAAAAAGAGGCAGGTAATCTTGCC > 1:144360/1‑141 CTTAGAGTCTTTATAGGATATCTTCACTTCTTTTTAAAAAAGGAAAAACAAGATAAATTTCTTCGTAATGCGTCTCAGTAACACTATTACCAAGAATTAACACGTATATTTAATAACTAAAAAGAGGCAGGTAATCTTGCC > 2:769914/1‑141 CTTAGAGTCTTTATAGGATATCTTCACTTCTTTTTAAAAAAGGAAAAACAAGATAAATTTCTTCGTAATGCGTCTCAGTAACACTATTACCAAGAATTAACACGTATATTTAATAACTAAAAAGAGGCAGGTAATCTTGCC < 1:452439/141‑1 AGAGTCTTTATAGGATTGCTTCACTTCTCTTTCAAAAAGGAAAAACAAGATAAATTTCTTCGTAATGCGTCTCAGTAACACTATTACCAAGAATTAACACGTATATTTAATAACTAAAAAGAGGCAGGTAATCTTGCCTCT < 1:398005/141‑1 AGAGTCTTTATAGGATATCTTCACTTCTTTTTAAAAAAGGAAAAACAAGATAAATTTCTTCGTAATGCGTCTCAGTAACACTATTACCAAGAATTAACACGTATATTTAATAACTAAAAATAGGCAGGTAATCTTGCCTCT < 1:602292/141‑1 AGAGTCTTTATAGGATATCTTAACTTCTTTTTAAAAAAGGAAAAACAAGATAAATTTCTTCGTAATGCGTCTCAGTAACACTATTACCAAGAATTAACACGTATATTTAATAACTAAAAAGAGGCAGGTAATCTTGCCTCT < 1:818551/141‑1 GATAAATTTCTTCGTAATGCGTCTCAGTAACACTATTACCAAGAATTAACACGTATATTTAATAACTAAAAAGAGGCAGGTAATCTTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGA > 2:714516/1‑141 GTAATGCGTCTCAGTAACACTATTACCAAGAATTAACACGTATATTTAATAACTAAAAAGAGGCAGGTAATCTTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTTTTGGTAATTGTGTTTCTGTGATGCATTACGAA > 1:123474/1‑141 GTAATGCGTCTCAGTAACACTATTACCAAGAATTAACACGTATATTTAATAACTAAAAAGAGGCAGGTAATCTTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAA > 1:750359/1‑141 GTAATGCGTCTCAGTAACACTATTACCAAGAATTAACACGTATATTTAATAACTAAAAAGAGGCAGGTAATCTTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGATAATAGTTTTACTAAGACGCATTAAGAA > 1:73708/1‑141 GTAATGCGTCTCAGTAACACTATTACCAAGAATTAACACGTATATTTAATAACTAAAAAGAGGCAGGTAATCTTGCCTATTTTTAGTTATTAAATATATGTGTTAATTCTTGGTTATATGGTTACTGAGACGCGTTATGAg > 1:123442/1‑140 AGGCAGGTAATCTTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTATAAAGACTCTAA > 1:887571/1‑141 TTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTATAAAGACTCTAAGTACTATTACAGTGGCTAA < 2:123442/141‑1 TTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTATAAAGACTCTAAGTACTATTACAGTGGCTAA < 2:123474/141‑1 TTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTATAAAGACTCTAAGTACTATTACAGTGGCTAA < 2:73708/141‑1 TTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTATAAAGACTCTAAGTACTATTACAGTGGCTAA < 2:750359/141‑1 TTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTATAAAGACTCTAAGTACTATTACAGTGGCTAATA < 1:638660/141‑1 TTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTAAAAAAAAAAAAAAAGAAGTGAAGATATCCTATAAAGACTCTAAGTACTATTACAGTGGCTAATAA < 2:366752/141‑1 AGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGCGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAGGAAGTGAAGATATCCTATAAAGACTCTAAGTACTATTACAGTGGCTAATAACA > 1:38408/1‑141 AGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAGGAAGTGAAGATATCCTATAAAGACTCTAAGTACTATTACAGTGGCTAATAACA > 1:38160/1‑141 GTACTTAGAGTCTTTATAGGATATCTTCACTTCTTTTTAAAAAAGGAAAAACAAGATAAATTTCTTCGTAATGCGTCTCAGTAACACTATTACCAAGAATTAACACGTATATTTAATAACTAAAAAGAGGCAGGTAATCTTGCCTCTTTTTAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1180132‑1179979‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcctctttttagtTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTATAAAGACTCTAAGTACTATTACAGTGGCTAATAACA > USA300TCH1516_ALE/1180015‑1180152 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |