New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1179979 =	89 (0.980)	6 (0.070)	3/252	9.4	6.9%	intergenic (+235/+70)	USA300HOU_RS05875/USA300HOU_RS05880	hypothetical protein/hypothetical protein
	?	USA300TCH1516_ALE	1180015 =	83 (1.020)					intergenic (+271/+34)	USA300HOU_RS05875/USA300HOU_RS05880	hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGTGAAACGTGTTTATGAACTAGACGTTCTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTATAAAGACTCTAAGTACTATTACAGTGGCTAATAACACTT  >  USA300TCH1516_ALE/1179875‑1180155                                                                                                                                             |                                                                                                                                             agTGGAACGTTTTTTTGAAATAGACGTTCTAGTAAAGTAACTATAGCTTTAGTCAGAAGGTATTATTGATAAGAACATAATAAATCAAAGAGGCATTGATATACATTAAAACGTCGTAACATTGCCTGCCTCTCTTTAGtt                                                                                                                                              <  2:457189/141‑1 (MQ=255) agTGAAACGTGTTTATGAACTAGACGTTCTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGtt                                                                                                                                              >  2:21469/1‑141 (MQ=255)        cGTGTTTATGAACTAGACGTTCTAGTATAGTTACTATAGCTTTTGTCAGAAGGTATCATTGATAAGATCATATTAAATCATAGAGGCATTGATATACACTAAAAAGAGGAAAGATTACCTGCCTCTTTTTAGTAATTAAat                                                                                                                                       >  2:5237/1‑141 (MQ=255)           gtTTATGAACTAGACGTTCTAGTATAGTTACGATAGCTTTAGTGAGAAGGTATCATTGATAAGATCATAATAAATCAATGAGCCAGTGGTATACACTAAAAAGAGGCAGAATTACCGGCCTCTGTTTAGTTACTAAatatc                                                                                                                                    >  2:625130/1‑140 (MQ=255)            tttATGAACTAGACGTTCTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATaaaaaaaac                                                                                                                                   >  2:673819/1‑136 (MQ=255)            tttATGAACTAGACGTTCTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATAc                                                                                                                                   >  1:285014/1‑141 (MQ=255)            tttATGAACTAGACGTTCTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATAc                                                                                                                                   >  2:673707/1‑141 (MQ=255)              tATGAACTAGACGTTCTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGGATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACgt                                                                                                                                 >  2:712702/1‑141 (MQ=255)              tATGAACTAGACGTTCTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCACGATTACCTGCCTCTTTTTAGTTATTAAATATACgt                                                                                                                                 >  2:66576/1‑141 (MQ=255)               ttGAACTAGACGTTCTAATATATTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACgtg                                                                                                                                <  2:424794/140‑1 (MQ=255)                tGAACTAGACGTTCTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACgtgt                                                                                                                               <  2:180703/141‑1 (MQ=255)                tGAACTAGACGTTCTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACgtgt                                                                                                                               <  2:430784/141‑1 (MQ=255)                 gAACTAGACGTTCTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGtt                                                                                                                              <  1:420603/141‑1 (MQ=255)                   aCTAGACGTTCTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTaa                                                                                                                            >  2:144360/1‑141 (MQ=255)                   aCTAGACGTTCTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTaa                                                                                                                            >  1:769914/1‑141 (MQ=255)                          gTTCTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCCTTGATAAGATCATATTAAATCAAAGAGGCATTGATATGCACTAAAAAGAGGCACGATTACCTGCCTCTTTTTAGTTGTTAAAAATTCGTGTTAATTCTTgt                                                                                                                     >  1:670223/1‑140 (MQ=255)                          gTTCTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTgg                                                                                                                     >  2:116112/1‑141 (MQ=255)                          gTTCTAGTAGGGTTACTATAGCTTCAGTCAGAAGGCTTCAATGATTAGCTCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCttcg                                                                                                                     >  1:728466/1‑139 (MQ=255)                             cTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTaa                                                                                                                  >  1:145338/1‑141 (MQ=255)                             cTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTaa                                                                                                                  >  1:945163/1‑141 (MQ=255)                             cTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTCATTAAATATACGTGTTAATTCTTGGTaa                                                                                                                  <  1:41613/141‑1 (MQ=255)                                gTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAg                                                                                                               >  1:164000/1‑141 (MQ=255)                                   taGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAgtgt                                                                                                            <  2:943758/141‑1 (MQ=255)                                   taGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAgtgt                                                                                                            <  1:116112/141‑1 (MQ=255)                                   aaGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAgtgt                                                                                                            <  2:869522/140‑1 (MQ=255)                                       tACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACt                                                                                                        >  1:366752/1‑141 (MQ=255)                                              gCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGc                                                                                                 >  2:901257/1‑141 (MQ=255)                                                 ttAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCCTTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCGTGGTAATAGTGTTACTGAGACGCAtt                                                                                              >  1:149475/1‑141 (MQ=255)                                                 ttAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCAtt                                                                                              <  1:811872/141‑1 (MQ=255)                                                  tAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGTGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTa                                                                                             <  2:721014/141‑1 (MQ=255)                                                       aGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACgaag                                                                                        >  2:562543/1‑141 (MQ=255)                                                            gTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAAtt                                                                                   <  2:323104/141‑1 (MQ=255)                                                                 aTTGGTAAGATCATATTAAATCAAAGAGGCATGGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTATGAAGAAATTTATCt                                                                              >  1:711896/1‑141 (MQ=255)                                                                             atatTAAATCAAAGAGGCATTGAGATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCttt                                                                  <  1:267535/141‑1 (MQ=255)                                                                                 tAAATCAAAGCGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTa                                                              <  2:722224/141‑1 (MQ=255)                                                                                 tAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTAAGAAGCATTGCGAGGAAATTTATCTTGTTTTTCCTTTTTTa                                                              >  2:511952/1‑141 (MQ=255)                                                                                  aaaTCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAGGAAATTTATCTTGTTTTTCCttttttta                                                             >  1:334613/1‑139 (MQ=255)                                                                                  aaaTCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTaa                                                             >  2:868399/1‑141 (MQ=255)                                                                                  aaaTCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTaa                                                             >  2:605574/1‑141 (MQ=255)                                                                                  aaaTCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTaa                                                             >  2:572482/1‑141 (MQ=255)                                                                                  aaaTCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTaa                                                             >  2:502600/1‑141 (MQ=255)                                                                                  aaaTCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTaa                                                             >  2:486915/1‑141 (MQ=255)                                                                                  aaaTCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTaa                                                             >  1:475251/1‑141 (MQ=255)                                                                                  aaaTCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATAAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGAAGCATTACGAACAAATTTATCTTGTTTTTCCTTTTTTaa                                                             >  2:187090/1‑141 (MQ=255)                                                                                       aaaaAGTCATTGATATACACTAAAAAGACGCAAGATTATCTGCCGCTTTTTAGTTATTAAATATACGTGTTAATTATTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAaaga                                                        <  1:262198/141‑1 (MQ=255)                                                                                       aaaGATGCATTGATATACACCAAAAAGAGGCAAGATTACCTGCTTCCTTTTAGTTATTAAATATACGTGTTAATTCGTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAaaga                                                        <  1:768930/141‑1 (MQ=255)                                                                                        aaGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCATCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAaagaa                                                       >  1:683202/1‑141 (MQ=255)                                                                                         agagGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTACATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGATGCATTACGAAGAAATTTGTCTTGTTTTTCCTTTTTTAAAaagaag                                                      >  1:103639/1‑141 (MQ=255)                                                                                         agagGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAaagaag                                                      >  1:859514/1‑141 (MQ=255)                                                                                         agagGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGCGTTACTGAGACGCATTACGAAGAAAATTATCTTGTTTTTCATTTTTTAAAaagaag                                                      >  1:81378/1‑141 (MQ=255)                                                                                            ggCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGa                                                   <  1:153176/141‑1 (MQ=255)                                                                                             gCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAACTATACGGGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTTAAAAGAAGTGaa                                                  >  1:277469/1‑141 (MQ=255)                                                                                             gCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTACTTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAACTTTCTCTTGTTTTTCTTTTTTTAAAAAGAAATGaa                                                  >  2:938292/1‑141 (MQ=255)                                                                                             gCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGaa                                                  >  2:964005/1‑141 (MQ=255)                                                                                             gCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGaa                                                  >  2:963867/1‑141 (MQ=255)                                                                                             gCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGaa                                                  >  1:560275/1‑141 (MQ=255)                                                                                             gCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGaa                                                  >  1:133763/1‑141 (MQ=255)                                                                                             gCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGaa                                                  >  1:327235/1‑141 (MQ=255)                                                                                               aTTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGa                                                >  1:357013/1‑141 (MQ=255)                                                                                                   atatACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATc                                            <  2:164000/141‑1 (MQ=255)                                                                                                      taCACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCta                                         <  1:886591/141‑1 (MQ=255)                                                                                                      taCACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCta                                         <  1:272883/141‑1 (MQ=255)                                                                                                      taCACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCta                                         <  1:993621/141‑1 (MQ=255)                                                                                                      taCACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCta                                         <  1:993650/141‑1 (MQ=255)                                                                                                       acacTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCtat                                        <  1:606396/141‑1 (MQ=255)                                                                                                       acacTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCtat                                        <  2:939878/141‑1 (MQ=255)                                                                                                       acacTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCtat                                        <  2:652047/141‑1 (MQ=255)                                                                                                                agagGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTTAAGATATCCTATAAAGActct                               >  1:818551/1‑141 (MQ=255)                                                                                                                agagGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTGAAAGAGAAGTGAAGCAATCCTATAAAGActct                               >  1:398005/1‑141 (MQ=255)                                                                                                                agagGCAAGATTACCTGCCTATTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTATAAAGActct                               >  1:602292/1‑141 (MQ=255)                                                                                                                   ggCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTATAAAGACTCTAAg                            <  1:144360/141‑1 (MQ=255)                                                                                                                   ggCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTATAAAGACTCTAAg                            <  2:769914/141‑1 (MQ=255)                                                                                                                   ggCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTATAAAGACTCTAAg                            >  1:452439/1‑141 (MQ=255)                                                                                                                    gCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAAATATCCTATAAAGCATCTaatt                           >  1:180350/1‑139 (MQ=255)                                                                                                                     cAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGTTATCCTATAAAGACTCTAATTa                          >  2:950318/1‑141 (MQ=255)                                                                                                                      aaGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTGTAAAAAGAAGTGAAGGTATCCTATAAAGACTCTAAGTAc                         <  1:282064/141‑1 (MQ=255)                                                                                                                      aaGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTAATCTGTATTTTAAAAAGAAGTGAAGATATCCTATAAAGACTCTAAGTAc                         <  1:524873/141‑1 (MQ=255)                                                                                                                         aTTACCTGCCTCTTTTTAGTTATTAAATATACGTCTTAATTCCAGATAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTATAAAGACTCTAAGTACTAt                      <  1:928126/141‑1 (MQ=255)                                                                                                                          ttACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTATAAAGACTCTAAGTACTAtt                     <  2:285014/141‑1 (MQ=255)                                                                                                                             ccTGCCTCTTTTTAGTTATTAGATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTATAAAGACTCTAAGTACTATTACa                  >  1:517898/1‑141 (MQ=255)                                                                                                                             ccTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTATAAAGACTCTAAGTACTATTACa                  >  1:861981/1‑141 (MQ=255)                                                                                                                             ccTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTATAAAGACTCTAACTACTATTACa                  >  2:425634/1‑141 (MQ=255)                                                                                                                             ccTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTAAAGATATCCTATAAAGACTCTAAGTACTATTACa                  >  1:711876/1‑141 (MQ=255)                                                                                                                                     tttttAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTATAAAGACTCTAAGTACTATTACAGTGGCtaa          <  2:750359/141‑1 (MQ=255)                                                                                                                                     tttttAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTATAAAGACTCTAAGTACTATTACAGTGGCtaa          <  2:73708/141‑1 (MQ=255)                                                                                                                                     tttttAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTATAAAGACTCTAAGTACTATTACAGTGGCtaa          <  2:123474/141‑1 (MQ=255)                                                                                                                                     tttttAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTATAAAGACTCTAAGTACTATTACAGTGGCtaa          <  2:123442/141‑1 (MQ=255)                                                                                                                                       tttAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTATAAAGACTCTAAGTACTATTACAGTGGCtaata        <  1:638660/141‑1 (MQ=255)                                                                                                                                        ttAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTAAAAAAAAAAAAAAAGAAGTGAAGATATCCTATAAAGACTCTAAGTACTATTACAGTGGCtaataa       <  2:366752/141‑1 (MQ=255)                                                                                                                                          aGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGCGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAGGAAGTGAAGATATCCTATAAAGACTCTAAGTACTATTACAGTGGCTAATAaca     >  1:38408/1‑141 (MQ=255)                                                                                                                                          aGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAGGAAGTGAAGATATCCTATAAAGACTCTAAGTACTATTACAGTGGCTAATAaca     >  1:38160/1‑141 (MQ=255)                                                                                                                                             tattaAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTATAAAGACTCTAAGTACTATTACAGTGGCTAATAACACtt  >  2:755743/1‑141 (MQ=255)                                                                                                                                             tattaAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTATAAAGACTCTAAGTACTATTACAGTGGCTAATAACACtt  >  2:868276/1‑141 (MQ=255)                                                                                                                                             |                                                                                                                                             AGTGAAACGTGTTTATGAACTAGACGTTCTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTATAAAGACTCTAAGTACTATTACAGTGGCTAATAACACTT  >  USA300TCH1516_ALE/1179875‑1180155

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.