New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1179979 =	89 (0.980)	6 (0.070)	3/252	9.4	6.9%	intergenic (+235/+70)	USA300HOU_RS05875/USA300HOU_RS05880	hypothetical protein/hypothetical protein
	?	USA300TCH1516_ALE	1180015 =	83 (1.020)					intergenic (+271/+34)	USA300HOU_RS05875/USA300HOU_RS05880	hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCTTATATATTATTTAAATAAAGTTTAGAGTGAAACGTGTTTATGAACTAGACGTTCTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTAT  >  USA300TCH1516_ALE/1179847‑1180117                                                                                                                                     |                                                                                                                                           gctTATATATTATTTAAATAAAGTTTAGAGTGAAACGTGTTTATGAACTAGACGTTCTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAag                                                                                                                                    >  2:993650/1‑141 (MQ=255) gctTATATATTATTTAAATAAAGTTTAGAGTGAAACGTGTTTATGAACTAGACGTTCTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAag                                                                                                                                    >  2:993621/1‑141 (MQ=255)  ctTATATATTATTTAAATAAAGTTTAGAGTGAAACGTGTTTATGAACTAGACGTTCTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAaga                                                                                                                                   >  2:524873/1‑141 (MQ=255)  ctTATATATTATTTAAATAAAGATTAGAGTGAAACGCGTTTATGAACTAGACGTTCTAGTATAGTTACTATAGCTTTAGTCACAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAaga                                                                                                                                   >  2:282064/1‑141 (MQ=255)           tattTAAATAAAGTTTAGAGTGAAACGTGTTTATGAACTAGACGTTCTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATCTTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGAtt                                                                                                                          <  2:530338/141‑1 (MQ=255)             tttAAATAAAGTTTAGAGTGAAACGTGTTTATGAACTAGACGTTCTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTAc                                                                                                                        <  1:911133/141‑1 (MQ=255)              ttAAATAAGGTTTAGCGTCAAACGTGTTGATGAACCAGACGTTTTTGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTAcc                                                                                                                       <  2:466277/141‑1 (MQ=255)                aaataaaGTTTAGAGTGAAACGTGTTTATGAACTAGACGTTCTAGTATGGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTg                                                                                                                     >  2:200295/1‑141 (MQ=255)                aaataaaGTTTAGAGTGAAACGTGTTTATGAACTAGACATTCTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAATGAGTGAAGATTAccgg                                                                                                                     >  2:125396/1‑139 (MQ=255)                   taaaGTTTAGAGTGAAACGTGTTTATGAACTAGACGTTCTAGTATAGTTACTATAGCTTTAGTCAAAAGGTAGCATTGATAAGAGCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCct                                                                                                                  >  1:635244/1‑141 (MQ=255)                     aaGTTTAGAGTGAAACGTGTTTATGAACTAGACGTTCTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATATGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCctct                                                                                                                >  2:267535/1‑141 (MQ=255)                      aGTTTAGATTAAAACGTGTTTATGCACTAGACGTTCTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCtt                                                                                                               <  2:180517/141‑1 (MQ=255)                        tttAGAGTGAAACGTGTTTATGAACTAGACGTTCTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCtttt                                                                                                             >  2:153176/1‑141 (MQ=255)                         ttAGAGTGAAACGTGTTTATGAACTAGACGTTCTAGTATAGTTACTATCGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCttttt                                                                                                            <  2:138867/141‑1 (MQ=255)                         ttAGAGTGAAACGTGTTTATGAACTAGACGTTCTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCttttt                                                                                                            >  1:700494/1‑141 (MQ=255)                          tAGAGTTAAACGTGTTTATGAACTAGACGTTCTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTa                                                                                                           <  1:452963/141‑1 (MQ=255)                          tAGAGTGAAAGCTGCTTATGAACTAGACGTTCTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTa                                                                                                           <  2:776196/141‑1 (MQ=255)                          tAGAGTGAAACGTGTTTATGAACTAGACGTTCTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTa                                                                                                           >  2:606396/1‑141 (MQ=255)                          tAGAGTGAAACGTGTTTATGAACTAGACGTTCTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTa                                                                                                           <  1:985724/141‑1 (MQ=255)                          tAGAGGGAAACGTGTTTATGAACTAGACGTTCTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTa                                                                                                           <  1:262213/141‑1 (MQ=255)                           agagTGAAACGTGTTTATGAACTAGACGTTCTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAg                                                                                                          <  2:695512/141‑1 (MQ=255)                           agagTGAAACGTGTTTATGAACGAGACGTTCTAGTATAGTTACTATAGCTTTAGTCATAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAg                                                                                                          <  2:450471/141‑1 (MQ=255)                             agTGGAACGTTTTTTTGAAATAGACGTTCTAGTAAAGTAACTATAGCTTTAGTCAGAAGGTATTATTGATAAGAACATAATAAATCAAAGAGGCATTGATATACATTAAAACGTCGTAACATTGCCTGCCTCTCTTTAGtt                                                                                                        <  2:457189/141‑1 (MQ=255)                             agTGAAACGTGTTTATGAACTAGACGTTCTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGtt                                                                                                        >  2:21469/1‑141 (MQ=255)                                    cGTGTTTATGAACTAGACGTTCTAGTATAGTTACTATAGCTTTTGTCAGAAGGTATCATTGATAAGATCATATTAAATCATAGAGGCATTGATATACACTAAAAAGAGGAAAGATTACCTGCCTCTTTTTAGTAATTAAat                                                                                                 >  2:5237/1‑141 (MQ=255)                                       gtTTATGAACTAGACGTTCTAGTATAGTTACGATAGCTTTAGTGAGAAGGTATCATTGATAAGATCATAATAAATCAATGAGCCAGTGGTATACACTAAAAAGAGGCAGAATTACCGGCCTCTGTTTAGTTACTAAatatc                                                                                              >  2:625130/1‑140 (MQ=255)                                        tttATGAACTAGACGTTCTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATaaaaaaaac                                                                                             >  2:673819/1‑136 (MQ=255)                                        tttATGAACTAGACGTTCTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATAc                                                                                             >  1:285014/1‑141 (MQ=255)                                        tttATGAACTAGACGTTCTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATAc                                                                                             >  2:673707/1‑141 (MQ=255)                                          tATGAACTAGACGTTCTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGGATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACgt                                                                                           >  2:712702/1‑141 (MQ=255)                                          tATGAACTAGACGTTCTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCACGATTACCTGCCTCTTTTTAGTTATTAAATATACgt                                                                                           >  2:66576/1‑141 (MQ=255)                                           ttGAACTAGACGTTCTAATATATTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACgtg                                                                                          <  2:424794/140‑1 (MQ=255)                                            tGAACTAGACGTTCTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACgtgt                                                                                         <  2:430784/141‑1 (MQ=255)                                            tGAACTAGACGTTCTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACgtgt                                                                                         <  2:180703/141‑1 (MQ=255)                                             gAACTAGACGTTCTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGtt                                                                                        <  1:420603/141‑1 (MQ=255)                                               aCTAGACGTTCTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTaa                                                                                      >  2:144360/1‑141 (MQ=255)                                               aCTAGACGTTCTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTaa                                                                                      >  1:769914/1‑141 (MQ=255)                                                      gTTCTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCCTTGATAAGATCATATTAAATCAAAGAGGCATTGATATGCACTAAAAAGAGGCACGATTACCTGCCTCTTTTTAGTTGTTAAAAATTCGTGTTAATTCTTgt                                                                               >  1:670223/1‑140 (MQ=255)                                                      gTTCTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTgg                                                                               >  2:116112/1‑141 (MQ=255)                                                      gTTCTAGTAGGGTTACTATAGCTTCAGTCAGAAGGCTTCAATGATTAGCTCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCttcg                                                                               >  1:728466/1‑139 (MQ=255)                                                         cTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTaa                                                                            >  1:945163/1‑141 (MQ=255)                                                         cTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTaa                                                                            >  1:145338/1‑141 (MQ=255)                                                         cTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTCATTAAATATACGTGTTAATTCTTGGTaa                                                                            <  1:41613/141‑1 (MQ=255)                                                            gTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAg                                                                         >  1:164000/1‑141 (MQ=255)                                                               taGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAgtgt                                                                      <  1:116112/141‑1 (MQ=255)                                                               taGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAgtgt                                                                      <  2:943758/141‑1 (MQ=255)                                                               aaGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAgtgt                                                                      <  2:869522/140‑1 (MQ=255)                                                                   tACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACt                                                                  >  1:366752/1‑141 (MQ=255)                                                                          gCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGc                                                           >  2:901257/1‑141 (MQ=255)                                                                             ttAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCCTTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCGTGGTAATAGTGTTACTGAGACGCAtt                                                        >  1:149475/1‑141 (MQ=255)                                                                             ttAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCAtt                                                        <  1:811872/141‑1 (MQ=255)                                                                              tAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGTGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTa                                                       <  2:721014/141‑1 (MQ=255)                                                                                   aGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACgaag                                                  >  2:562543/1‑141 (MQ=255)                                                                                        gTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAAtt                                             <  2:323104/141‑1 (MQ=255)                                                                                             aTTGGTAAGATCATATTAAATCAAAGAGGCATGGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTATGAAGAAATTTATCt                                        >  1:711896/1‑141 (MQ=255)                                                                                                         atatTAAATCAAAGAGGCATTGAGATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCttt                            <  1:267535/141‑1 (MQ=255)                                                                                                             tAAATCAAAGCGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTa                        <  2:722224/141‑1 (MQ=255)                                                                                                             tAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTAAGAAGCATTGCGAGGAAATTTATCTTGTTTTTCCTTTTTTa                        >  2:511952/1‑141 (MQ=255)                                                                                                              aaaTCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAGGAAATTTATCTTGTTTTTCCttttttta                       >  1:334613/1‑139 (MQ=255)                                                                                                              aaaTCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTaa                       >  2:502600/1‑141 (MQ=255)                                                                                                              aaaTCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTaa                       >  1:475251/1‑141 (MQ=255)                                                                                                              aaaTCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTaa                       >  2:868399/1‑141 (MQ=255)                                                                                                              aaaTCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTaa                       >  2:572482/1‑141 (MQ=255)                                                                                                              aaaTCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTaa                       >  2:605574/1‑141 (MQ=255)                                                                                                              aaaTCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTaa                       >  2:486915/1‑141 (MQ=255)                                                                                                              aaaTCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATAAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGAAGCATTACGAACAAATTTATCTTGTTTTTCCTTTTTTaa                       >  2:187090/1‑141 (MQ=255)                                                                                                                   aaaaAGTCATTGATATACACTAAAAAGACGCAAGATTATCTGCCGCTTTTTAGTTATTAAATATACGTGTTAATTATTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAaaga                  <  1:262198/141‑1 (MQ=255)                                                                                                                   aaaGATGCATTGATATACACCAAAAAGAGGCAAGATTACCTGCTTCCTTTTAGTTATTAAATATACGTGTTAATTCGTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAaaga                  <  1:768930/141‑1 (MQ=255)                                                                                                                    aaGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCATCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAaagaa                 >  1:683202/1‑141 (MQ=255)                                                                                                                     agagGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTACATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGATGCATTACGAAGAAATTTGTCTTGTTTTTCCTTTTTTAAAaagaag                >  1:103639/1‑141 (MQ=255)                                                                                                                     agagGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAaagaag                >  1:859514/1‑141 (MQ=255)                                                                                                                     agagGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGCGTTACTGAGACGCATTACGAAGAAAATTATCTTGTTTTTCATTTTTTAAAaagaag                >  1:81378/1‑141 (MQ=255)                                                                                                                        ggCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGa             <  1:153176/141‑1 (MQ=255)                                                                                                                         gCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAACTATACGGGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTTAAAAGAAGTGaa            >  1:277469/1‑141 (MQ=255)                                                                                                                         gCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTACTTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAACTTTCTCTTGTTTTTCTTTTTTTAAAAAGAAATGaa            >  2:938292/1‑141 (MQ=255)                                                                                                                         gCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGaa            >  1:327235/1‑141 (MQ=255)                                                                                                                         gCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGaa            >  1:133763/1‑141 (MQ=255)                                                                                                                         gCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGaa            >  2:964005/1‑141 (MQ=255)                                                                                                                         gCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGaa            >  2:963867/1‑141 (MQ=255)                                                                                                                         gCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGaa            >  1:560275/1‑141 (MQ=255)                                                                                                                           aTTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGa          >  1:357013/1‑141 (MQ=255)                                                                                                                               atatACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATc      <  2:164000/141‑1 (MQ=255)                                                                                                                                  taCACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCta   <  1:272883/141‑1 (MQ=255)                                                                                                                                  taCACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCta   <  1:993650/141‑1 (MQ=255)                                                                                                                                  taCACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCta   <  1:886591/141‑1 (MQ=255)                                                                                                                                  taCACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCta   <  1:993621/141‑1 (MQ=255)                                                                                                                                   acacTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCtat  <  1:606396/141‑1 (MQ=255)                                                                                                                                   acacTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCtat  <  2:939878/141‑1 (MQ=255)                                                                                                                                   acacTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCtat  <  2:652047/141‑1 (MQ=255)                                                                                                                                     |                                                                                                                                           GCTTATATATTATTTAAATAAAGTTTAGAGTGAAACGTGTTTATGAACTAGACGTTCTAGTATAGTTACTATAGCTTTAGTCAGAAGGTATCATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTAT  >  USA300TCH1516_ALE/1179847‑1180117

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.