| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2699163 = | 72 (0.790) | 22 (0.250) +TAGTGT |
3/268 | 9.8 | 24.2% | intergenic (+67/‑224) | copA/copZ | Copper‑exporting P‑type ATPase A/Copper chaperone CopZ |
| ? | USA300TCH1516_ALE | = 2699363 | 72 (0.790) | intergenic (+267/‑24) | copA/copZ | Copper‑exporting P‑type ATPase A/Copper chaperone CopZ | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
ATTAGTGGCTCTTATGCAGTTGGAGCGAAGATCCAACTGTAAACCGTAGTGTACTTATTATTTATAATAATTAGTGGCTCTTATGCAGTTGGAGCGAAGATCCAACTGTAAACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2699277‑2699163‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACTTATTATTTATAATAATTAGTGGCTCTTATGCAGTTGGAGCGAAGATCCAACTGTAAACCGTAGTGTACTTATTATTTATAATAATTAGTGGCTCTTATGCAGTTGGAGCGAAGATCCAACTGTAAAC < USA300TCH1516_ALE/2699363‑2699234 |||||| ATTAGTGGCTCTTATGCAGTTGGAGCGAAGATCCAACTGTAAACCGTAGTGTACTTATTATTTATAATAATTAGTGGCTCTTATGCAGTTGGAGCGAAGATCCAACTGTAAACCGTAGTGTACTTATTATTTATAATAATT > 1:170148/1‑141ATTAGTGGCTCTTATGCAGCTGGAGCGAAGATCCAACTGTAAACCGTAGTGTACTTATTATTTATCATAATTAGTGGCTCTTATGCAGTTGGAGCGCAGATCCAACTGTAAACCGGAGTGTACTTATTATTTATAATAATT > 1:554001/1‑141 TGGCTCTTATGCAGTTGGAGCGAAGATCCAACTGTAAACCGTAGTGTACTTATTATTTATAATAATTAGTGGCTCTTATGCAGTTGGAGCGAAGATCCAACTGTAAACCGTAGTGTTATTATGATTTATACTAACTAGTtg > 2:821783/1‑139 TGGCTCTTATGCAGTTGGAGCGAAGATCCAACTGTAAACCGTAGTGTACTTATTATTTATAATAATTAGTGGCTCTTATGCAGTTGGAGCGAAGATCCAACTGTAAACCGTAGTGTACTTATTCTTTATAATAATTAGTGG > 1:715277/1‑141 atCAGTTGGAGCGAAGATCCAACTGTAAACCGAAGTGTACTTATTATTTATAATAATTAGTGGCTCTTATGCAGTTGGAGCGAAGATCCAACTGTAAACCGTAGTGTACTTATTATTTATAATAATTAGTGGCTCTTATGC < 1:742176/139‑1 agtAGTTTGAGCGAAGATCCTATTGTAAACCGTGGTGTACTTATTATTTATAATAATTAGTGGCTCTTATGCAGTTGGAGCGAAGATCCAACTGTAAACCGTAGTGTACTTATTATTTATAATAATTAGTGGCTCTTATGC < 2:814121/138‑1 TGCCGTTGGCGCAAAGATCCAACTGTAAGCCGTGGTGTACTTATTATTTATAATAATTAGTGGCTCTTATGCAGTTGGCGCGAAGCTCCAACTGTAAACCGTAGTGTACTTATTATTTATAATAATTAGTGGCTCTTATGC < 1:267923/141‑1 GTTGGAGCGAAGATCCAACTGTAAACCGTAGTGTACTTATTATGTATAATAATTAGTGGCTCTTATGCAGTTGGAGCGAAGATCCAACTGTAAACCGTAGTGTACTTATTATTTATAATAATTAGTGGCTCTTATGCAGTT < 1:24925/141‑1 AGATCCAACTGTAAACCGTAGTGTACTTATTATTTATAATAATTAGTGGCTCTTATGCAGTTGGAGCGAAGATCCAACTGTAAACCGCGGCGTAATTATTATTAAGAATAATCAGTGGCTATTATGCCATAGGAGCCAAGA > 2:381315/1‑141 AGTGTACTTATTATTTATAATAATTAGTGGCTCTTATGCAGTTGGAGCGAAGATCCAACTGTAAACCGTCGTGTACTTATTATTTATAATAATTAGTGGCTCTTATGCAGTTGGAGCGAAGATCCAACTGTAAAactcgac > 1:458262/1‑134 taaTATTTATCATACTTATTGTCTCTCATGCTGTTGGAGCGAAGATCCAACTCTAAACCGTAGTGCACTTATTATTTATAATAATTAGTGGCTCTTATGCAGTTGGAGCGAAGATCCAACTGTAAACCGTAGTGTACTTAT < 2:561498/138‑1 taaTATTTATAATAATTAGGAGCTCTTATGCAGTTGGAGCGAAGATCCAACTGTAAACCGTAGTGTACTTATTATTTACAATACTTAATGGCTCTTCTGCGGCCAAGTCGAAGATCCAACTGTAAACCGTAGTGTACTTAT < 1:234630/138‑1 ATTAGTGGCTCTTATGCAGTTGGAGCGAAGATCCAACTGTAAACCGTAGTGTACTTATTATTTATAATAATTAGTGGCTCTTATGCAGTTGGAGCGGAGATCCAACTGTTAATCGTAGTGTGCTTATATTTTATAATAATT > 1:358666/1‑141 GCTCTTATGCAGTTGGAGCGAAGATCCAACTGTAAACCGTAGTGTACTTATTATTTATAATAATTAGTGGCTCTTATGCAGTTGGAGCGAAGATCCAACTGTAAACCGTAACGTAATTATTATTTATAATAATTAGTTGCT > 2:821184/1‑141 tttTTATGCAGCTGGTGCGAAGATCCAACCGTAAACCGTAGTGTACTTATTATTTATAATAATTAGTGGCTCTTATGCAGTTGGAGCGAAGATCCAACTGTAAACCGTAGTGTACTTATTATTTATAATAATTAGTGGCTC < 2:156007/138‑1 TTATGCAGTTGGAGCGAAGATCCAACTGTAAACCGTAGTGTACTTATTATTTATAATAATTAGTGGCTCTTATGCAGTTGGAGCGAAGATCCAACTGTAAACCGTAGTGTACTTATTATTTATAATAATTAGTGGCTCTTA > 1:96406/1‑141 ATGCAGTTGGAGCGAAGATCCAACTGTAAACCGTAGTGTACTTATTATTTATAATAATTAGTGGCTCTTATGCAGTTGGAGCGAAGATCCAACTGTAAACCGTAGTGTACTTATTATTTATAATAATTAGTGGCTCTTATG > 1:94581/1‑141 tgtAGTTGGAGAGAAGATACACCTGTAATCCGTAGTTTACTTATTATTTATAATAATTAGTGGCTCTTATGCAGTTGGAGCGATGATCCAACTGTAAACCGTAGTGTACTTATTATTTATAATAATTAGTGGCTCTTATGC < 2:366104/138‑1 TGCAGTTGGAGCGAAGATCCAACTGTAAACCGTAGTGTACTTATTATTTATAATAATTAGTGGCTCTTATGCAGTTGGAGCGAAGATCCAACTGTAAACCGTAGTGTACTTATTATTTATAATAATTAGTGGCTCTTATGC < 1:580984/141‑1 GTTGGAGCGAAGATCCAACTGTAAACCGTAGTGTACTTATTATTTATAATAATTAGTGGCTCTTATGCAGTTGGAGCGAAGATCCAACTGTAAACCGTAGTGTACTTATTATTTATAATAATTAGTGGCTCTTATGCAGTT < 1:999165/141‑1 AGATCCAACTGTAAACCGTAGTGTACTTATTATTTATAATAATTAGTGGCTCTTATGCAGTTGGAGCGAAGATCCAACTGTAAACCGTAGTGTACTTATTATTTATAATAATTAGTGGCTCTTATGCAGTTGGAGCGAAGA > 1:892242/1‑141 AACCGTAGTGTACTTATTATTTATAATAATTAGTGGCTCTTATGCAGTTGGATAGATGATCCAACTGTAAACCGTAGTGTACTTATTATTTATAATAATTAGTGGCTCTTATGCAGTTGGAGCGAAGATCCAACTGTAAAC < 1:771930/141‑1 |||||| ATTAGTGGCTCTTATGCAGTTGGAGCGAAGATCCAACTGTAAACCGTAGTGTACTTATTATTTATAATAATTAGTGGCTCTTATGCAGTTGGAGCGAAGATCCAACTGTAAACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2699277‑2699163‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACTTATTATTTATAATAATTAGTGGCTCTTATGCAGTTGGAGCGAAGATCCAACTGTAAACCGTAGTGTACTTATTATTTATAATAATTAGTGGCTCTTATGCAGTTGGAGCGAAGATCCAACTGTAAAC < USA300TCH1516_ALE/2699363‑2699234 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |