New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2699163 =	72 (0.790)	22 (0.250) +TAGTGT	3/268	9.8	24.2%	intergenic (+67/‑224)	copA/copZ	Copper‑exporting P‑type ATPase A/Copper chaperone CopZ
	?	USA300TCH1516_ALE	= 2699363	72 (0.790)					intergenic (+267/‑24)	copA/copZ	Copper‑exporting P‑type ATPase A/Copper chaperone CopZ
Rejected: Coverage evenness skew score above cutoff.

ACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACGGTGTCACTTCAGCTGACGTTAACCTTGAAAAT  >  USA300TCH1516_ALE/2699226‑2699503                                                                                                                                          |                                                                                                                                             acccTACGGTTTACTGTTGGATCTTCGCTCCAACTGCATTAGAGCCACTAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGc                                                                                                                                           <  2:183870/138‑1 (MQ=255)   acTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTACACTACGGTTGACAGTAGGATCTTGGCACAAACAGCATAAAAGCCACAAATTATTATATATAATAAGTggata                                                                                                                                         >  2:166991/1‑138 (MQ=11)       cGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGACCCCCTAATTATTATAAATAATAAGTGGCTCTaaa                                                                                                                                     >  1:48812/1‑141 (MQ=255)       cGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACGAATTATTATAATTAATAAGTACATTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTTGCTCTaaa                                                                                                                                     >  1:212680/1‑141 (MQ=255)        ggTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCGTAAAAGCCACTAATTATTATAAATAATAAGTGGCTCTaaaa                                                                                                                                    >  1:889910/1‑141 (MQ=255)          tttACAGTTGGATCTTCGCTCCAACTCCATAAGAGCCACTAACTATTAAAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAagg                                                                                                                                  <  1:502784/141‑1 (MQ=255)              cAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTACACTACAGATTACAGTTAGATCTTCGCTCCAACTGCATAAGAGGCACAAGTTATTATAAATAATAAGTGGCTCTAAAaggcgga                                                                                                                              >  2:913728/1‑140 (MQ=14)                gTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGa                                                                                                                            <  2:354200/141‑1 (MQ=255)                   ggATCTTCGCTCCAACTGCATAAGGGCCACTAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTAGCTTGAAATGGGTATTTATCACTGGTTATTATAAATAATAAGTGGCTCCAATAGGAGTTTAATg                                                                                                                         <  2:453572/141‑1 (MQ=2)                       cTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTACACTACAGATTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAACTGGCACTAAAAGGAGGTGAATGCTAt                                                                                                                     >  2:282808/1‑141 (MQ=255)                        ttCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATg                                                                                                                    <  2:127469/141‑1 (MQ=255)                          cgcgCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTACACTACGGTTAACAGTTGGATCTTAGCTCCAACTGCATAAGAGCCACTATTTATTATAAATATTCAGTGGCTCTAAAAGGAGGTGAAGGCTATgac                                                                                                                  >  2:805703/1‑139 (MQ=17)                            cTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGGTATGTcac                                                                                                                >  1:319406/1‑141 (MQ=255)                             tCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCAATGCAAAAGAGAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTcaca                                                                                                               >  1:974440/1‑141 (MQ=17)                                   tGCATAAGAGCCACTAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTTTTTCACAAGAAAt                                                                                                         >  1:35605/1‑141 (MQ=255)                                         agagCCACTAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTAGGTCACAAGAAATTTTcaa                                                                                                   >  1:397692/1‑141 (MQ=255)                                         agagCCACTAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACAAGAGACCAGAGATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTaaa                                                                                                   >  1:978500/1‑141 (MQ=18)                                                        tataAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAg                                                                                    <  1:325192/141‑1 (MQ=255)                                                           aaataaTAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCtg                                                                                 <  1:156007/141‑1 (MQ=255)                                                                  aaGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTCTAAATAATAAGTGGATCTAAAAGGAGGTGAATGCTCTGTAACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGtacc                                                                          >  1:694745/1‑138 (MQ=25)                                                                  aaGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGtaga                                                                          >  2:739631/1‑138 (MQ=255)                                                                  aaGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCAc                                                                          >  1:39711/1‑141 (MQ=255)                                                                  aaGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGGGAATGCTATGTCACAAGAAATTTTAAATGGTGCAGGTACGAGCTGTGGacac                                                                          >  2:451482/1‑141 (MQ=21)                                                                  aaGTACACTACGGTTTACAGTTGGATCTTCACTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGACGGTATGCGCGGTGGTCAc                                                                          >  2:894375/1‑141 (MQ=255)                                                                  aaGTACACGCCGGGTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGGGGTCAc                                                                          >  2:860790/1‑141 (MQ=255)                                                                     tACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTga                                                                       >  2:736309/1‑140 (MQ=255)                                                                     tACACTACGGTTTACAGTTGGATCTTAGCTCCAACTGCATAAGAGCCGCTAATTATTATAAATAATAAGTGGCCCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAAGTAATAGTTGTggaccatga                                                                       >  2:643436/1‑134 (MQ=21)                                                                       cacTGCGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCaa                                                                     <  2:928512/141‑1 (MQ=255)                                                                         cTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCaaaa                                                                   >  2:689885/1‑141 (MQ=255)                                                                           aCGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCaaaaat                                                                 >  1:153018/1‑139 (MQ=255)                                                                             ggTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGc                                                               >  1:415565/1‑141 (MQ=255)                                                                              gTTTACAGTTGGAACTTCGCTCCAACGGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTAGGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCt                                                              <  2:597114/141‑1 (MQ=255)                                                                                ttACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCACAAGTGCTgg                                                            >  2:660991/1‑140 (MQ=255)                                                                                ttACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGt                                                            >  2:996003/1‑141 (MQ=255)                                                                                ttACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGAGCTGt                                                            >  1:839256/1‑141 (MQ=255)                                                                                ttACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTAGGAGCTGTGGTCACTGCAAAAGTGCTGt                                                            >  1:420086/1‑141 (MQ=255)                                                                                ttACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGCGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGt                                                            >  1:607444/1‑141 (MQ=255)                                                                                 tACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGtt                                                           >  1:798065/1‑141 (MQ=255)                                                                                  aCAGTTTGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTg                                                          <  2:973101/141‑1 (MQ=255)                                                                                   cAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATCAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGa                                                         <  1:819915/141‑1 (MQ=255)                                                                                   cAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGa                                                         <  1:486517/141‑1 (MQ=255)                                                                                      ttGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGaagc                                                      >  2:428393/1‑139 (MQ=255)                                                                                      ttGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATc                                                      >  2:145351/1‑141 (MQ=255)                                                                                      ttGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATc                                                      >  2:220719/1‑141 (MQ=255)                                                                                       tGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCt                                                     <  2:497913/141‑1 (MQ=255)                                                                                             ttCGCTCCAACTGCATAAGAGCCACCAACTATTATAAATAATAAGTGGCCCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTa                                               <  1:926924/141‑1 (MQ=255)                                                                                              tCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTaa                                              <  2:974440/141‑1 (MQ=255)                                                                                                 cTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGCATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAaata                                           >  2:642871/1‑141 (MQ=255)                                                                                                      aCTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGACTGCTATGTCACAAGAAATTCTAAATGTTGAAGGTATCAGCTGTGGTCACTGCAAAAGTGCTGTTGAAACTGCATTAAATAATAtt                                      >  2:451854/1‑141 (MQ=255)                                                                                                      aCTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGATCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAACAGTGCCGTTGAATCTGCATTGAATAATAtt                                      >  2:622967/1‑141 (MQ=255)                                                                                                       cTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTg                                     <  1:865576/141‑1 (MQ=255)                                                                                                       cTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTg                                     <  1:561498/141‑1 (MQ=255)                                                                                                          cATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACg                                  <  1:615420/141‑1 (MQ=255)                                                                                                          cATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACg                                  <  1:397463/141‑1 (MQ=255)                                                                                                                   cACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTAAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACGGTGTCACtt                         >  1:148273/1‑141 (MQ=255)                                                                                                                       aaTTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACGGTTTCACTTCCGc                     >  2:135896/1‑141 (MQ=255)                                                                                                                       aaTTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACGGTGTCACTTCAGc                     >  2:264020/1‑141 (MQ=255)                                                                                                                       aaTTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACGGTGTCACTTCAGc                     >  1:414907/1‑141 (MQ=255)                                                                                                                       aaTTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACGGTGTCACTTCAGc                     >  2:834782/1‑141 (MQ=255)                                                                                                                       aaTTATTATAAATAAGAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTGGACTCGGCATTAAATAATATTGACGGTATCACTTCAgg                     >  2:176221/1‑140 (MQ=255)                                                                                                                        attattATAAATAATAAGTGGCTCTAAAAGGAGGTGAGTGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTCAATAATATTGACGGTGGCACTTCAgat                    >  1:628871/1‑139 (MQ=255)                                                                                                                        attattATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACGGTGTCACTTCAGCt                    <  1:104785/141‑1 (MQ=255)                                                                                                                        attattATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACGGTGTCACTTCAGCt                    >  1:615611/1‑141 (MQ=255)                                                                                                                        attattATAAACAATAAGTGGCTCTAAAAGGGGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACGGTGTCACTTCAGCt                    <  2:229583/141‑1 (MQ=255)                                                                                                                         ttattaTAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAAAATTGACGGTGTCACTTCAGCTg                   >  2:27357/1‑141 (MQ=255)                                                                                                                                      taaGTGGCTCTCAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGGTGAAGGTATGAGATGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACGGTGTCACTCCAGCTGACGTTAACCTTGa      >  2:42857/1‑141 (MQ=255)                                                                                                                                       aaGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACGGTGTCACTTCAGCTGACGTTAACCTTGaa     >  1:572803/1‑141 (MQ=255)                                                                                                                                       aaGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACGGTGTCACTTCAGCTGACGTTAACCTTGaa     >  1:82150/1‑141 (MQ=255)                                                                                                                                        aGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACGGTGTCACTTCAGCTGACGTTAACCTTGaaa    >  2:972433/1‑141 (MQ=255)                                                                                                                                        aGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACGGTGTCACTTCAGCTGACGTTAACCTTGaaa    >  2:989020/1‑141 (MQ=255)                                                                                                                                          tGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAGTCTGCATTAAATAATATTGACGGTGTCACTTCAGCTGACGTTAACCTTGAAAAt  <  1:662945/141‑1 (MQ=255)                                                                                                                                          tGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACGGTGTCACTTCAGCTGACGTTAACCTTGAAAAt  <  1:232279/141‑1 (MQ=255)                                                                                                                                          |                                                                                                                                             ACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACGGTGTCACTTCAGCTGACGTTAACCTTGAAAAT  >  USA300TCH1516_ALE/2699226‑2699503

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.